Query= MSMg01no548_h04.b1 MSMg01no548_h04.b1 CHROMAT_FILE:
MSMg01no548_h04.b1 PHD_FILE: MSMg01no548_h04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:22 2005
(609 letters)
>mm_chr6_15105523_15106531
Length = 1009
Score = 1147 bits (593), Expect = 0.0
Identities = 602/605 (99%)
Strand = Plus / Minus
Query: 5 gaattctcagatggcacaaaacactgtagactatttcatcagaagtatgattgagctgga 64
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 809 gaattctcagatggcacaaaacactgtagactatttcatcagaagtacgattgagctgga 750
Query: 65 atatgcagtgctgcctagcttcctgtgatgctcagtcagtaattgagcactgggacttgg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 atatgcagtgctgcctagcttcctgtgatgctcagtcagtaattgagcactgggacttgg 690
Query: 125 tgatacccatgaaacccagtcaaagaataagaaggagagcgtcttccctccctcaaggaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 tgatacccatgaaacccagtcaaagaataagaaggagagcgtcttccctccctcaaggaa 630
Query: 185 acactctttgctgctcaagatgactaaagatgactgaagacatttgaataactgtgtggt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 acactctttgctgctcaagatgactaaagatgactgaagacatttgaataactgtgtggt 570
Query: 245 caacattaaatcttttgtatcaatccttgatataatttctattttatatcaattccattc 304
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 caacattaaatcttttttatcaatccttgatataatttctattttatatcaattccattc 510
Query: 305 atcttgtacctctcccagccaagttaaatatttaaaatatgagtataaaatattggaagc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 atcttgtacctctcccagccaagttaaatatttaaaatatgagtataaaatattggaagc 450
Query: 365 aacatgactgagatcataacattaaactaaaagaattacgttgcaatataatgttgaaag 424
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aacatgactgagatcgtaacattaaactaaaagaattacgttgcaatataatgttgaaag 390
Query: 425 aagcagaaccacggagacaaaccttcctgaattttaaaaaacattttccagtcgtcctat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aagcagaaccacggagacaaaccttcctgaattttaaaaaacattttccagtcgtcctat 330
Query: 485 aatctaaccagcaattgaatctaatacattttcaaaagcaaattgccaaatgaatgggtt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aatctaaccagcaattgaatctaatacattttcaaaagcaaattgccaaatgaatgggtt 270
Query: 545 taattttataatagcttccaattttttattcttaatatccctataaattctacaaatcct 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 taattttataatagcttccaattttttattcttaatatccctataaattctacaaatcct 210
Query: 605 gtatt 609
|||||
Sbjct: 209 gtatt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_h04.g1 MSMg01no548_h04.g1 CHROMAT_FILE:
MSMg01no548_h04.g1 PHD_FILE: MSMg01no548_h04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:22 2005
(613 letters)
>mm_chr6_14968154_14969166
Length = 1013
Score = 1094 bits (566), Expect = 0.0
Identities = 602/614 (98%), Gaps = 1/614 (0%)
Strand = Plus / Plus
Query: 1 ctggaatttctgctgatcaactacttgcatcctatctggtttccaagactaaattgcaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggaatttctgctgatcaactacttgcatcctatctggtttccaagactaaattgcaga 260
Query: 61 gtctctgtcaaataaactttattttctcatttcatataaatgtataagcaatgattacta 120
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 261 gtctctgtcaaataaactttattttctcatttcatattaatttataagcaatgattacta 320
Query: 121 aacagatagtgcaggtaaaattcttttttt-attattattagatattttctttatttaca 179
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 aacagatagtgcaggtaaaattcttttttttattattattagatattttctttatttaca 380
Query: 180 tttcaaatgttattcctgttcctggtctccctctgaaaaccccctccccttgtctcctct 239
||||||||||||| |||||||||||||||||||||| | |||||| ||||| |||||| |
Sbjct: 381 tttcaaatgttatccctgttcctggtctccctctgacagcccccttcccttatctcctgt 440
Query: 240 tccctcccccactcaccaacccacccaattctgctttctggccctggcattcccctatgc 299
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccctcccccgctcaccaacccacccaattctgctttctggccctggcattcccctatgc 500
Query: 300 tgggccacagaaccttcacaggacaaatggcctctcctcccattgatgaccaactaggcc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgggccacagaaccttcacaggacaaatggcctctcctcccattgatgaccaactaggcc 560
Query: 360 atcctctgatgcatatgtagctggagccatgagtcccaccatgtgttttcattggttggt 419
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 atcctctgatgcatatgtagctggagccatgagtcccaccatgtgtttttattggttggt 620
Query: 420 ggtttagtccctgggacctctggggggtgctggctagttcatattgttgttcctcctgtg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtttagtccctgggacctctggggggtgctggctagttcatattgttgttcctcctgtg 680
Query: 480 gagctgtaaactccttcaactccttgggtcctttctctgactccttcattggggactctg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagctgtaaactccttcaactccttgggtcctttctctgactccttcattggggactctg 740
Query: 540 tgctcagtccaatggatgtctgtatctggtttccttctttgtccctcctaggctcttcct 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgctcagtccaatggatgtctgtatctggtttccttctttgtccctcctaggctcttcct 800
Query: 600 tccttaatttatag 613
||||||||||||||
Sbjct: 801 tccttaatttatag 814
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space: 604809
Effective search space used: 604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
