BAC Information

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BAC

Clone NameMSMg01-548N13
Chromosome6 (Build37)
Map Location 41,890,070 - 41,890,624
singlet/doubletsinglet
Overlap genenone
Upstream gene1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2
Downstream geneSval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548N13.T7 (MSMg01no548_n13.b1)MSMg01-548N13.TJ (MSMg01no548_n13.g1)
ACCAG613096AG613097
length726740
length of high quality
(start - end)		532 (48 - 579)592 (76 - 667)
definitionCHROMAT_FILE: MSMg01no548_n13.b1 PHD_FILE: MSMg01no548_n13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:53 2005CHROMAT_FILE: MSMg01no548_n13.g1 PHD_FILE: MSMg01no548_n13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTATTCATATCTGGAGGCTGGCCCAGAATTCTACTTTTGGGG
GAATCAAAGGTGAAAGGTTGACAATGTTTGGGAGTAGGAGGATAAAGAAA
AAATAATCTTTAATATCAATAGAAAATAGTGAAGCATTGGCTGGAATTTG
AAATCTCTAGATGTGTATGGTCTTTTTAATGGCACATGGGTCTGATAATA
GCCACAATCCTCAGAATTCTTTTTAATTGCAAAGATAGGATTATTCCATG
GGCTGTAGTAGAGGTGGACATTTTGGAGGTATAAACAGCTCCAGGAGACT
CTTTCAGAAGAGAGCTTAGTTGTTAAAATAGCAGACTAGATTGTATAGCT
TGAGTTAGGGGCAAGGGCAGGAAAAGGGACAAGGGAGGGCAGGATCTTCC
AAGCTTGTCACCTAGATTAGCAGACTATCAGACACCTGATTTCTGAGAAG
CCAATTCTCTGTCTGGGAAACGAAAGCCTGATTGGTTCTATCATGACATG
GCTTTTGTCTTTATGAAGTTCAGTAGGCCCAATCCAGGTTGGGGTAGGGA
GCACCCTCTCTGCTGCTATGCTTTGAGGGATTTCTGGGCTACAAGCTATG
TTCTACCATCTGTATCTCTTGGTAACTCAGAGAATGACTCTCATACTCCA
GACTAATTAAGCACGAGTCTGAAGGG

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATCAAATAGAAACAAAGAGAACTA
TATAAAGAAAAAAAAATACCAAAACAAAAACCAAGAGCTGGTTCCTTTCA
ATGATCAACAAGATCAATAAACTCTTAGTCAGACTAACCAGAGGGCACGA
GACTGTATCCAAATAACAAATCACAAGTGATAAGGGAGACAAAACAAAAG
AACCTGAAAAAAAATTTTTAAAAATTACCAGAACCTACTACAAAAGACTA
TATTCAACAAAACTAGAAAATCTGGAAGAAATGGATAATTTTATAGACAG
CAGGTATCAAAGTTAAATCAGGATCAGATAAACCATCTAAACAGTCCCAT
AACTCCTAAAGAAATAGAAGCAGCCATTAAAATTCTCCCAACCAGAAAAA
ACAAAAACAAAAACAAAAACAGAAACAAAACAAAAAGATGCCCAGGATCA
GATGGTTTTAGTCCAGAATTCTATCAGATCTTCAAAGAAGACCTAATACT
AACACCCTTCAAACTATTCCACAGAATAGAAGCAGAAGGAAGACTAATTC
ACTCTATGAAGCCACAGTTATGTTGATACCAAAACCACAAAAAGACCCAA
CAAAGAAAGAGAACTTCACATCAATTTCCTCTATGGATATTGACGGAAAA
AAATACTCAATAAAATTCTAGCAAACTGAATCCAAAAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_n13.b1 MSMg01no548_n13.b1 CHROMAT_FILE:
MSMg01no548_n13.b1 PHD_FILE: MSMg01no548_n13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:53 2005
         (532 letters)



>mm_chr6_41889893_41890824
          Length = 932

 Score =  888 bits (459), Expect = 0.0
 Identities = 518/555 (93%), Gaps = 27/555 (4%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctattcatatctggaggctggcccagaattctacttttgggggaatcaaaggt 64
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 gaattctttattcatatctggaggctggcccagaattctacttttgggggaatcaaaggt 237

                                                                       
Query: 65  gaaaggttgacaatgtttgggagtaggaggataaagaaaaaataatctttaatatcaata 124
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 238 gaaaggttgacaatgtttgggagtagggggataaagaaaaaataatctttaatatcaata 297

                                                                       
Query: 125 gaaaatagtgaagcattggctggaatt---------------------------tgaaat 157
           ||||||||||||| |||||||||||||                           ||||||
Sbjct: 298 gaaaatagtgaagtattggctggaattgtggagacaagaggatggtccttctgttgaaat 357

                                                                       
Query: 158 ctctagatgtgtatggtctttttaatggcacatgggtctgataatagccacaatcctcag 217
           ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 358 ctctagatgtgtatggtctttttaatggcacatgggtcttataatagtcacaatcctcag 417

                                                                       
Query: 218 aattctttttaattgcaaagataggattattccatgggctgtagtagaggtggacatttt 277
           |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 418 aattatttttaattgcaaagataggattattccatgggctgtggtagaggtggacatgtt 477

                                                                       
Query: 278 ggaggtataaacagctccaggagactctttcagaagagagcttagttgttaaaatagcag 337
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ggaggtatgaacagctccaggagactctttcagaagagagcttagttgttaaaatagcag 537

                                                                       
Query: 338 actagattgtatagcttgagttaggggcaagggcaggaaaagggacaagggagggcagga 397
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 actagattgtatagcttgagttaggggcaagggcaggaaaagggacaagggagggcagga 597

                                                                       
Query: 398 tcttccaagcttgtcacctagattagcagactatcagacacctgatttctgagaagccaa 457
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tcttccaagcttgtcacctagattagcagactatcagacacctgatttctgagaagccaa 657

                                                                       
Query: 458 ttctctgtctgggaaacgaaagcctgattggttctatcatgacatggcttttgtctttat 517
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 658 ttctctgtctgggaaacgaaagcctaattggttctatcatgacatggcttttgtctttat 717

                          
Query: 518 gaagttcagtaggcc 532
           |||||||||||||||
Sbjct: 718 gaagttcagtaggcc 732


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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