BAC Information

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BAC

Clone NameMSMg01-548O07
Chromosome6 (Build37)
Map Location 95,533,574 - 95,533,970
singlet/doubletsinglet
Overlap geneSuclg2
Upstream geneSlc25a26, Lrig1, LOC625941, EG665865, LOC100043276, LOC100043680, Kbtbd8, LOC435912
Downstream geneLOC665886, LOC545867, C630007B19Rik, LOC100043685, 1700123L14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548O07.T7 (MSMg01no548_o07.b1)MSMg01-548O07.TJ (MSMg01no548_o07.g1)
ACCAG613131AG613132
length768757
length of high quality
(start - end)
425 (48 - 472)391 (75 - 465)
definitionCHROMAT_FILE: MSMg01no548_o07.b1 PHD_FILE: MSMg01no548_o07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:56 2005CHROMAT_FILE: MSMg01no548_o07.g1 PHD_FILE: MSMg01no548_o07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAGCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTAAGTTTACTATTTTGAACTAGCCCTGAGATTTCTAGCTCCTA
TCCAGTAAAATACTGCAAGAGAGCATGCAAGACCTTCCACACTATTACAG
GGACAAATCTGGTTATGGGGCACCAGAGACTCTCCAGGAGACAAGTTTCC
ATGAAACTTTTTGTCTCAGGACTGCGGCCAAGCTTTTGGGCTTGCCATGC
AGACTCCACTGGAGTGGGTGTGTCATGTTTCTCCCATTTGTCGATAGTCA
TCCTTGTTAGAACCCTAATCCCCATTACATCGTACCTTGCTTACTCCTCT
GTTGGCACAGCTCACAGTAATAGCATACAGATAACATATACAGGTAACAT
ACATTTGGCATGAGTAAGACTAAGTAAATCACATATGTAGGCTGTCTACA
TTGAATGCTTCTAGGAATTAACAGTAGCTGTCATAATGTGGCAGCAGAAA
AAACCCAGATTGGGCAAATCTGTTGACCCATGGGTTGGAAAGCTTAGCTT
CTGAACACAGTATAAATCTCCTACAGATGATAATAAGAATATTTAATAAT
ATCCCTAAAAAACCCGTGTGCTACCTCCCATATGTTGAGAGAAAAATTAA
AGGGGTAATTTTTTAAATCTTTTAATATGAACATAATTTTATTACCTTCC
CCCAGGATTTCTTGAAATGTGAATTATGGTCCCACAAAGCCCAGAATTGG
GAATCCTCGGGGACTTAN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTTTACCAATTTCCAGAGTGGCTGT
ACTAGTTTGCATTCCTACCAATACTAGGTAATGGATAGGTTTCCTGTCTT
CACATCCTCTCTAGCGTTGGTTGTCAGTTGTTTTTGTTTGTTTTTGCTTG
TTTTGTTTTTTGAGCTTAGCCATACTGACTTGAGTGAGATGAAATCTCAG
GGTTGTTTTAATTACATTTCTTTGATTGCTACGGATGTTGAGCCATGTTT
AGAATATTTCTTAGTCATTTTTATTTCTTTTTTTTTAAACTCTCCATTAA
GATCCATAGCCCAGTTTTTTAATTGGTTCATTTGTTTTCTTGATTCAGTT
GTGTTTCGAGTTCTTTGTATATTCTGGATATTAATCCTGTACCAGCTGCA
CTGCTGACCTTTAGATGCACAGATGAAGAACATGAACATAAGCTTGCACT
CAATCACTAATAATAACCATAATTTAAAATGAAATGTATTCTAAAAATAT
ATAAAATGGGTAAATGCATCTTGAGCCTTACGAATTTATTATTAGAAAGG
ACGGGGTTAACCATTCTGAAATCCTTTTGAAATAGACCAGAAAAAGTAAA
GGGCATTGTGGCCCTTTTCAAGCTTGTCAGGAAAAACATTTTTGAAAAAA
AATTTGTGATAAAGCACTCTCCCTTAAATAAAACCCTTCTAAATAAAACC
CTAAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_o07.b1 MSMg01no548_o07.b1 CHROMAT_FILE:
MSMg01no548_o07.b1 PHD_FILE: MSMg01no548_o07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:56 2005
         (425 letters)



>mm_chr6_95533146_95533970
          Length = 825

 Score =  760 bits (393), Expect = 0.0
 Identities = 396/397 (99%)
 Strand = Plus / Minus

                                                                       
Query: 29  ctagccctgagatttctagctcctatccagtaaaatactgcaagagagcatgcaagacct 88
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 ctagccctgagatttctagctcctatccagtaaaatactgcaagagagcatgcaagacct 766

                                                                       
Query: 89  tccacactattacagggacaaatctggttatggggcaccagagactctccaggagacaag 148
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 tccacactattacagggacaaatctggttatggggcaccagagactctccaggagacaag 706

                                                                       
Query: 149 tttccatgaaactttttgtctcaggactgcggccaagcttttgggcttgccatgcagact 208
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 tttccatgaaactttttgtctcaggactgcggccaagcttttgggcttgccatgcagact 646

                                                                       
Query: 209 ccactggagtgggtgtgtcatgtttctcccatttgtcgatagtcatccttgttagaaccc 268
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ccactggagtgggtgtgtcatgtttctcccatttgtcgatagtcatccttgttagaaccc 586

                                                                       
Query: 269 taatccccattacatcgtaccttgcttactcctctgttggcacagctcacagtaatagca 328
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 taatccccattacatcgtaccttgcttactcctctgttggcacagctcacagtaatagca 526

                                                                       
Query: 329 tacagataacatatacaggtaacatacatttggcatgagtaagactaagtaaatcacata 388
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 525 tacagataacatatacaggtaacatacatttggcatgagcaagactaagtaaatcacata 466

                                                
Query: 389 tgtaggctgtctacattgaatgcttctaggaattaac 425
           |||||||||||||||||||||||||||||||||||||
Sbjct: 465 tgtaggctgtctacattgaatgcttctaggaattaac 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)