CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGCTGCTGTGGAGGTTGTCTCACATGGGAATGGAGAATCAAACCTG
GATCCCCTACAAAAGCCGAATGTATTCTTAACGTCTGAGCCATCTTTCAA
CTCCACAACCACAAAATTGCTAATCAGCCCTGTAACCCTTAAATAGGGAG
TTTATCTCTCTCTCTCTCTATATATATATATATATTTATATATCCATCTA
TCTATCTGTCCGTCCACCCATCCATCCATCCATCCATCCATCCATCCATC
CATCCACCCATTTTGTACTTCAGTTCACATCTACAGAATCAGAAACCCTG
GAGGTGGTACTAGTTTTCTGGGTTGTAACATAGTTTCTAGACAAGACTGA
CTGTCAGGTCAGCGCAAATGAGAACATGAGGTCCCTTGATCAGAAGTTAG
AAAGAGTACCCACAGCTCAGCATAGTTAAGCACAGAGCAACAGAGGCAGA
ACCCCATGAAATGGCTTAAGACACACAGACCTTGAAGTTCACCGTGCTTC
CATGTGGCTCCTTGAAGCCTAAGGACTTTTCTACATCCTGTTTCCTTCTG
CAGCTGGGCACTATCCAGGGCGAGGCTCANGCACAACACTGGCTCTCAGA
TGGTGAATACTGCACTGGGCCCACTCATTCCTCATGTGACATCTTCTTAG
GCTCAAGGCCTCCTGTGTGTCATCTCCTTCCAGC

ATGCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXGTCTCATGTCATTTTTACTGACGAGTTTTA
ATCCAGCAACATGGCTGCTCTGGAAAGGAATCACATCCAAAGATATGATC
CAGCCAGAATGCAAACAGGCTCTGGATTTACAGAAAGATCTCGTATGAAG
TACAGGCACGCCTTTAGATCCCTAACATGTGACGGGAGCGTGAGTTAGAA
GAAAGATGGTGTATTTGGAAGAGACGTCTCTTAAGAGGGCGAACGAAGTG
ACAGATGCGAAAGGAGATGCTGACGAATGGAGACACAGACAGGATACGCC
CAACTCTTAAGACGACGGCGCGGGAAGGATGAAGCGACTTCAGAAAAGGC
CAGGGAGAGACGTCCGACGATTCCGATGAGGCTGATTGAGTGCAAACCAG
AGCGGTACGATGCAGAGGAGCGGAGATCAGGTCAGAATCATCTCCGTTCA
GTTCAAATCTACTGCGGACTATTCTCGGAGTCTCGAGCGAATTTTGACTA
ACAGAGCGGTTCGTTCCTAACCTGACAGATCCATGTCTGATTCTCTCAAC
TTGGAGAGGAGCTTTGACCTTGACATGTAAGTTGAACCAGCCAGCCTTCC
AGAGTTCACAAAGAAAGAACTTGTGAGAGTGAGTTTATTCTCTCCTATTG
CTCTGACACTACCATTACATCTGGAGAGTGAATGCTACTATGATGCG

Query= MSMg01no548_p03.b1 MSMg01no548_p03.b1 CHROMAT_FILE:
MSMg01no548_p03.b1 PHD_FILE: MSMg01no548_p03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:31:00 2005
         (601 letters)



>mm_chr6_99956687_99957687
          Length = 1001

 Score =  743 bits (384), Expect = 0.0
 Identities = 413/427 (96%), Gaps = 8/427 (1%)
 Strand = Plus / Minus

                                                                       
Query: 175 tatatatatatatatatttatatatccatctatctatctgtccgtccacccatccatcca 234
           ||||||||||||||||| |||||||||    ||||||||||||||||||    |||||||
Sbjct: 955 tatatatatatatatatatatatatcc----atctatctgtccgtccac----ccatcca 904

                                                                       
Query: 235 tccatccatccatccatccatccatccacccattttgtacttcagttcacatctacagaa 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 tccatccatccatccatccatccatccacccattttgtacttcagttcacatctacagaa 844

                                                                       
Query: 295 tcagaaaccctggaggtggtactagttttctgggttgtaacatagtttctagacaagact 354
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 843 tcagaaaccctggaggtggtactagttttctgggttgtaacctagtttctagacaagact 784

                                                                       
Query: 355 gactgtcaggtcagcgcaaatgagaacatgaggtcccttgatcagaagttagaaagagta 414
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 783 gactgtcaggtcagcgcaaatgcgaacatgaggtcccttgatcagaagttagaaagagta 724

                                                                       
Query: 415 cccacagctcagcatagttaagcacagagcaacagaggcagaaccccatgaaatggctta 474
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 723 cccacagctcagcatagttaaacacagagcaacagaggcagaaccccatgaaatggctta 664

                                                                       
Query: 475 agacacacagaccttgaagttcaccgtgcttccatgtggctccttgaagcctaaggactt 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 agacacacagaccttgaagttcaccgtgcttccatgtggctccttgaagcctaaggactt 604

                                                                       
Query: 535 ttctacatcctgtttccttctgcagctgggcactatccagggcgaggctcangcacaaca 594
           ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 603 ttctacaccctgtttccttctgcagctgggcactatccagggcgaggctcaggcacaaca 544

                  
Query: 595 ctggctc 601
           |||||||
Sbjct: 543 ctggctc 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space:   585681
Effective search space used:   585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)