BAC Information

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BAC

Clone NameB6Ng01-001L03
Chromosome7 (Build37)
Map Location 72,071,918 - 72,246,262
singlet/doubletdoublet
Overlap genenone
Upstream geneKlf13, Trpm1, BB128963, Mtmr15, LOC100041582, Mphosph10, Mcee, Apba2, 5730507A09Rik, Ndnl2
Downstream geneTjp1, Gm1693, EG665234, Tarsl2, Tm2d3, LOC665241, Pcsk6, Snrpa1, H47
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001L03.bB6Ng01-001L03.g
ACCDH839942DH839943
length9791,083
definitionDH839942|Mus musculus domesticus DNA, BAC clone: B6Ng01-001L03, 5' end.DH839943|Mus musculus domesticus DNA, BAC clone: B6Ng01-001L03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,071,918 - 72,072,656)(72,245,166 - 72,246,262)
sequence
gaattcaccatggcctcaggtggcatctcaggctactcacatcaggctgt
tcctctccagcctcaggtctccatttctgcctctcttcatagtgatcaag
ccattctgcttctctttctctcccacctctccacatacttttactcatag
tggctggcctagcctccgaatgtctactctctgctggcaactcttaagga
tgagcagtctgcacaactgagtcaagttgtatgtgtgtgccagcaccctc
ctctacttgctaaagctgcctctcaaccaggggtaccagctaacaactag
caccccccacatgtgtgctggaattaaacaatgaagcaaataaacagcaa
acggcaagggctatctcactattgaagtgagagcaggggaaggaggctag
gatgagcctgtggcccagactgtcacagaagccatcactctgacctcatg
tttaggtttaggtatagatacaaatggctactgagagaaacatttgaaga
tacaaatatatagtgttgacccttcacaatagtcacaaataatataaaat
agcttggtgtgactttaattaagtaggtgaaagatccatatgataagaac
ttcaagtctctgaaggaagaattctaagatctcagaagatgaacagatct
cccaagctcaaggattggcaggattgatatagtaaaaatggccatcttgc
cgaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaa
ttcttcacagagttagaaagggcaatttgcaaattcatctggaacaacaa
aaaaaccgaggatagcaaaaactattctcaacaataaaagaacttctggg
ggaatcaccatgcctgacctcaagctgtactacagagcaattgtgtttaa
aaactgcatggtacagcgacagacagatagatcaatagaatagaattgag
gacccagaaatgaacccacacacctatgg
gaattccaggtgagatgaaaataggtcaaaggtcgtgccctgcgcctcag
tgttcctcttatccactcaaagaactgtgcgcagattgcgacaagttgct
ttaaaatatctcgagttctaaaaaaagttgatttgacaactttctgccaa
ttttctcatcatgtctatggaacagagattattttttttctattttcttc
ttcctttttttgcttacattaatctttttattaatttgaaagcttctttt
ttagctacaaattttgtactagttttgtactttgcaaatatttccttcca
ggaagtggattgccttttcttataacagcacgttttaaaggcaagacatg
atatattttgatatactgaagtttttctttagtctagagatgtatagatt
tgttccttatacaatctttctttaatacgtacatgagtgtatgtgtgtgt
gggcaagcgtgtgtgccagaggatgcatgcagaagacacaaggcaacttg
tggaagtgtgttctcttcttccacatgggtcctggggattgaactcaggt
tgtcaggattggcagcaggcccctttaccagctgagccatattgctgacc
ctctcttctataaactttaacattttacattttgtgtctttgtaaattgg
ctcttttttatttatttttttatttctaattatgtatctgagtatgtgtc
tgtatgtgggcatatgcattgtgtctgccatcagggaacctgagtgtgga
gttgctttcccttttattcaggacagaatctcagtccatggaatggtgcc
tgccataatttcttcccaccttaattaatctaattgaggtaaaccctcat
aggtatgccaagaggttaacttaatttagataatccttccttggtaattg
tagatcctgacaggtgataatgttaccatctcatgagaggcagtgaggga
ggggagacaagcaatggaaggagagaccctgtgcacacatctctctagag
atgccagtctcatacacgaaaggcagactacagcttaggggacagcatct
tacccttgctaagcaccatttctgtccttcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_72071918_72072656
seq2: B6Ng01-001L03.b_46_784

seq1  GAATTCACCATGGCCTCAGGTGGCATCTCAGGCTACTCACATCAGGCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATGGCCTCAGGTGGCATCTCAGGCTACTCACATCAGGCTGT  50

seq1  TCCTCTCCAGCCTCAGGTCTCCATTTCTGCCTCTCTTCATAGTGATCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCCAGCCTCAGGTCTCCATTTCTGCCTCTCTTCATAGTGATCAAG  100

seq1  CCATTCTGCTTCTCTTTCTCTCCCACCTCTCCACATACTTTTACTCATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTGCTTCTCTTTCTCTCCCACCTCTCCACATACTTTTACTCATAG  150

seq1  TGGCTGGCCTAGCCTCCGAATGTCTACTCTCTGCTGGCAACTCTTAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGCCTAGCCTCCGAATGTCTACTCTCTGCTGGCAACTCTTAAGGA  200

seq1  TGAGCAGTCTGCACAACTGAGTCAAGTTGTATGTGTGTGCCAGCACCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGTCTGCACAACTGAGTCAAGTTGTATGTGTGTGCCAGCACCCTC  250

seq1  CTCTACTTGCTAAAGCTGCCTCTCAACCAGGGGTACCAGCTAACAACTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTTGCTAAAGCTGCCTCTCAACCAGGGGTACCAGCTAACAACTAG  300

seq1  CACCCCCCACATGTGTGCTGGAATTAAACAATGAAGCAAATAAACAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCCACATGTGTGCTGGAATTAAACAATGAAGCAAATAAACAGCAA  350

seq1  ACGGCAAGGGCTATCTCACTATTGAAGTGAGAGCAGGGGAAGGAGGCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCAAGGGCTATCTCACTATTGAAGTGAGAGCAGGGGAAGGAGGCTAG  400

seq1  GATGAGCCTGTGGCCCAGACTGTCACAGAAGCCATCACTCTGACCTCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGCCTGTGGCCCAGACTGTCACAGAAGCCATCACTCTGACCTCATG  450

seq1  TTTAGGTTTAGGTATAGATACAAATGGCTACTGAGAGAAACATTTGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTTTAGGTATAGATACAAATGGCTACTGAGAGAAACATTTGAAGA  500

seq1  TACAAATATATAGTGTTGACCCTTCACAATAGTCACAAATAATATAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATATATAGTGTTGACCCTTCACAATAGTCACAAATAATATAAAAT  550

seq1  AGCTTGGTGTGACTTTAATTAAGTAGGTGAAAGATCCATATGATAAGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGTGTGACTTTAATTAAGTAGGTGAAAGATCCATATGATAAGAAC  600

seq1  TTCAAGTCTCTGAAGGAAGAATTCTAAGATCTCAGAAGATGAACAGATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTCTCTGAAGGAAGAATTCTAAGATCTCAGAAGATGAACAGATCT  650

seq1  CCCAAGCTCAAGGATTGGCAGGATTGATATAGTAAAAATGGCCATCTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCTCAAGGATTGGCAGGATTGATATAGTAAAAATGGCCATCTTGC  700

seq1  CGAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAA  739
      |||||||||||||||||||||||||||||||||||||||
seq2  CGAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAA  739

seq1: chr7_72245166_72246262
seq2: B6Ng01-001L03.g_69_1151 (reverse)

seq1  CATGAAGGACAGAAATAGTGCCTTAGCAAGGGTTAGATGCTGTCCCCCTA  50
      |||||||||||||||| ||| |||||||||||| |||||||||||||   
seq2  CATGAAGGACAGAAATGGTG-CTTAGCAAGGGTAAGATGCTGTCCCC--T  47

seq1  AAGCTGTTGGCTGCCTTTCGGTGTAAGGAGACTGGGCATCTCTAGAGAGA  100
      ||||||| | ||||||||| |||| | |||||| ||||||||||||||||
seq2  AAGCTGTAGTCTGCCTTTC-GTGT-ATGAGACT-GGCATCTCTAGAGAGA  94

seq1  TGTGTTCCACCAGGGTCTCTCCCTTCCATTTGCTTTGTCTCCCCTCCCCT  150
      ||||| |   |||||||||| ||||||| |||| ||||||||||| ||||
seq2  TGTGTGC--ACAGGGTCTCT-CCTTCCA-TTGC-TTGTCTCCCCT-CCCT  138

seq1  CACTGCCTCTCATGAGATGGTTAACATTATCACCTTGTCAGGATCTACAA  200
      |||||||||||||||||||| ||||||||||||| |||||||||||||||
seq2  CACTGCCTCTCATGAGATGG-TAACATTATCACC-TGTCAGGATCTACAA  186

seq1  TTACCAAGGAAGGATTATCTAAATTAAGTTAACCTCTTGGCATACCTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAAGGAAGGATTATCTAAATTAAGTTAACCTCTTGGCATACCTATG  236

seq1  AGGGTTTACCTCAATTAGATTAATTAAGGTGGGAAGAAATTATGGCAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTACCTCAATTAGATTAATTAAGGTGGGAAGAAATTATGGCAGGC  286

seq1  ACCATTCCATGGACTGAGATTCTGTCCTGAATAAAAGGGAAAGCAACTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTCCATGGACTGAGATTCTGTCCTGAATAAAAGGGAAAGCAACTCC  336

seq1  ACACTCAGGTTCCCTGATGGCAGACACAATGCATATGCCCACATACAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCAGGTTCCCTGATGGCAGACACAATGCATATGCCCACATACAGAC  386

seq1  ACATACTCAGATACATAATTAGAAATAAAAAAATAAATAAAAAAGAGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTCAGATACATAATTAGAAATAAAAAAATAAATAAAAAAGAGCCA  436

seq1  ATTTACAAAGACACAAAATGTAAAATGTTAAAGTTTATAGAAGAGAGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAAAGACACAAAATGTAAAATGTTAAAGTTTATAGAAGAGAGGGT  486

seq1  CAGCAATATGGCTCAGCTGGTAAAGGGGCCTGCTGCCAATCCTGACAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATATGGCTCAGCTGGTAAAGGGGCCTGCTGCCAATCCTGACAACC  536

seq1  TGAGTTCAATCCCCAGGACCCATGTGGAAGAAGAGAACACACTTCCACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCAATCCCCAGGACCCATGTGGAAGAAGAGAACACACTTCCACAA  586

seq1  GTTGCCTTGTGTCTTCTGCATGCATCCTCTGGCACACACGCTTGCCCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCTTGTGTCTTCTGCATGCATCCTCTGGCACACACGCTTGCCCACA  636

seq1  CACACATACACTCATGTACGTATTAAAGAAAGATTGTATAAGGAACAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATACACTCATGTACGTATTAAAGAAAGATTGTATAAGGAACAAAT  686

seq1  CTATACATCTCTAGACTAAAGAAAAACTTCAGTATATCAAAATATATCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACATCTCTAGACTAAAGAAAAACTTCAGTATATCAAAATATATCAT  736

seq1  GTCTTGCCTTTAAAACGTGCTGTTATAAGAAAAGGCAATCCACTTCCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCCTTTAAAACGTGCTGTTATAAGAAAAGGCAATCCACTTCCTGG  786

seq1  AAGGAAATATTTGCAAAGTACAAAACTAGTACAAAATTTGTAGCTAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAATATTTGCAAAGTACAAAACTAGTACAAAATTTGTAGCTAAAAA  836

seq1  AGAAGCTTTCAAATTAATAAAAAGATTAATGTAAGCAAAAAAAGGAAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTTTCAAATTAATAAAAAGATTAATGTAAGCAAAAAAAGGAAGAA  886

seq1  GAAAATAGAAAAAAAATAATCTCTGTTCCATAGACATGATGAGAAAATTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAGAAAAAAAATAATCTCTGTTCCATAGACATGATGAGAAAATTG  936

seq1  GCAGAAAGTTGTCAAATCAACTTTTTTTAGAACTCGAGATATTTTAAAGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAGTTGTCAAATCAACTTTTTTTAGAACTCGAGATATTTTAAAGC  986

seq1  AACTTGTCGCAATCTGCGCACAGTTCTTTGAGTGGATAAGAGGAACACTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTCGCAATCTGCGCACAGTTCTTTGAGTGGATAAGAGGAACACTG  1036

seq1  AGGCGCAGGGCACGACCTTTGACCTATTTTCATCTCACCTGGAATTC  1097
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGCAGGGCACGACCTTTGACCTATTTTCATCTCACCTGGAATTC  1083