BAC Information

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BAC

Clone NameB6Ng01-001N18
Chromosome7 (Build37)
Map Location 90,013,885 - 90,094,973
singlet/doubletdoublet
Overlap geneRkhd3
Upstream geneTm6sf1, Hdgfrp3, Bnc1, Sh3gl3, Adamtsl3, 1700129I04Rik, Eftud1, LOC100038986, LOC619808
Downstream geneLOC619909, A530021J07Rik, EG666160, Tmc3, Stard5, Il16, Phgdh-ps1, LOC666170, 1700026D08Rik, Mesdc1, Mesdc2, 9930013L23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001N18.bB6Ng01-001N18.g
ACCDH840061DH840062
length1,1321,019
definitionDH840061|Mus musculus domesticus DNA, BAC clone: B6Ng01-001N18, 5' end.DH840062|Mus musculus domesticus DNA, BAC clone: B6Ng01-001N18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,093,828 - 90,094,973)(90,013,885 - 90,014,902)
sequence
gaattcctgaactcatgaagaattcctgaattcctgaagaagcatatgcc
acgtgacctttaaaaagccctctttgtatgtagacatttgattgccatac
tgtgtgtctatctttaggggaatgaacactataaagagaatcagactggg
atcacccaggacatttttgctttcactggacaagaaaacaaacaaacaaa
caaaagctcacatattccagaactctagatgaatctcctcccaacattcc
agggctctccagagaagtgtccctccaactttaaattttccttcctagag
acagagatgagtttcagaagacttaagagaccaatgaaacttacaaggct
agtcagacaggctagaaagctacaatatttataaggttccttcccataat
tataaaagctgcaaacaattgctagtgagaagagatgctctgatggaact
ttctacaagttgggtagggaactccagaatgaagctctcttgacacatga
acaaaggtatggtggcctttttggtgatgcaggtgcctttagtcatccac
tatccagtaagtaaccctggtgaactcattcatttgctaaagttgacttg
agttgaatcttttctttagtctgtcattggtgcctacctggagtaaacaa
acattggtttacatcttcacaggaaaagtcactcagcccatgctcattct
gtaactcaaacagagaacagtgacatggcatagttaaggaagtaacaagt
tgtccacaaacaccgtaagagtgtgggtaatctgaatgtacaaagtcata
tatgacaaagagaagaacggaggtctcggtgctaccctggcgtgctgggc
aaaacgttcatccttcttatccaccaacatcaagggggaagcaggaagct
tggatgttgcttaaaactccaacttacagttttttaaaaaatatgtcatc
atgaattgtggtaagaagtggagtctgtcactccatactattccactctt
aagggatttctcctcaaccaatgttgatggatgtcattgctttggaagct
ttctagagactagacacagaatatatatggtcacatacatactactacta
ctactacgtactactactactactactcacac
gaattctctactggtcagcgaactctctctgcaccaccattttcttaccc
ccacccccaccccgtccactcccgccccttatagaactgattctttgaag
aaaaacacagccagcttggggaagctgacgtaaacatcctgaggaaatag
ccacagtaaagccgcacctcagcctcatttccctagggaaataatcagca
cctctgccccgagacagctccaggtgagtttggagcttgggatcaccttc
gcacgcttggaagtgcaggcgctggcagaacagtccgctcccaagtgcac
tgccaaccattgtcacttttaaccacccaggcattgggcaggggaggtat
tgtggataaaagccgaggtgcggggtgatcccttttttctgggtccctca
gatctgccccaggtccccagggtcgcccccagcggggaaggggttctcca
gtaaaccagtctgcggtgtacacaagtcgcctcggaatcaccaggaggcg
tctctcccggcagaccttaacaggattagggaaagcctggactactagcc
tgcagggcgcaggggcgcggataaacaggcgggctccgggaacaaaggac
ggagaagcggatgcgctttgagcagggaaggggcgtgctcctctcgcagg
agggagatgcgccgaggcccgaaccccgccccggcccgcccctcaaaacc
tcctttcttttcgcttgcgctcggaggctatcggtggagaagccaggagg
gggcgcagttcgccttggccgcccgctagtcctgtcgcaccctttcctcc
gccgtctcccccaacccgagaagcgcacaaagagcgccaggcccgaccac
acacctcccggcggggccgggctgggcggaggtcggggccggcgcgctct
gggcttctctcaggcactgcgcatgcctgaccgcaggtagggggcgggcc
tgggagcggcgggtgcgcacgctcttcattgtttccgggcatgtagggct
ggcgtcccgcagtgggcgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_90093828_90094973
seq2: B6Ng01-001N18.b_47_1178 (reverse)

seq1  GTGTGAGTAGTAGTAGTAGTAGTA-GTAGTAGTAGTAGTAGTAATTGTAA  49
      |||||||||||||||||||||||| ||||||||||||||||||  |||| 
seq2  GTGTGAGTAGTAGTAGTAGTAGTACGTAGTAGTAGTAGTAGTA--TGTA-  47

seq1  TAGTAGAACCAATATATATTCTGTTGGTTCTAGTCCTCTAGAAAGCCTTT  99
         |   ||| |||||||||||||    |||||| |||||||||||  ||
seq2  ---TGTGACC-ATATATATTCTGT---GTCTAGT-CTCTAGAAAGC--TT  87

seq1  CCAAAGCAATGACCATCCCATCCACA-TGGTTGGGGAGAAAATCCCTAAT  148
      |||||||||||| ||| ||||| ||| |||||| |||| |||||||| | 
seq2  CCAAAGCAATGA-CAT-CCATCAACATTGGTTGAGGAG-AAATCCCTTAA  134

seq1  GAGTGG-ATAGTATGGAGTGACAGACTCCACTTCTTACCACAATTCATGA  197
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGAATAGTATGGAGTGACAGACTCCACTTCTTACCACAATTCATGA  184

seq1  TGACATATTTTTTAAAAAAACTGTAAGTTTGGAGTTTTAAGCAACATCCA  247
      ||||||||||||| ||||||||||||| ||||||||||||||||||||||
seq2  TGACATATTTTTT-AAAAAACTGTAAG-TTGGAGTTTTAAGCAACATCCA  232

seq1  AGCTTCCTGCTTCCCCCTTGATGTTGGTGGATAAGAAGGATGAACG-TTT  296
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGCTTCCTGCTTCCCCCTTGATGTTGGTGGATAAGAAGGATGAACGTTTT  282

seq1  GCCCAGCACGCCAGGGTAGCACCGAGACCTCCGTTCTTCTCTTTGTCATA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCACGCCAGGGTAGCACCGAGACCTCCGTTCTTCTCTTTGTCATA  332

seq1  TATGACTTTGTACATTCAGATTACCCACACTCTTACGGTGTTTGTGGACA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTTTGTACATTCAGATTACCCACACTCTTACGGTGTTTGTGGACA  382

seq1  ACTTGTTACTTCCTTAACTATGCCATGTCACTGTTCTCTGTTTGAGTTAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTACTTCCTTAACTATGCCATGTCACTGTTCTCTGTTTGAGTTAC  432

seq1  AGAATGAGCATGGGCTGAGTGACTTTTCCTGTGAAGATGTAAACCAATGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAGCATGGGCTGAGTGACTTTTCCTGTGAAGATGTAAACCAATGT  482

seq1  TTGTTTACTCCAGGTAGGCACCAATGACAGACTAAAGAAAAGATTCAACT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTACTCCAGGTAGGCACCAATGACAGACTAAAGAAAAGATTCAACT  532

seq1  CAAGTCAACTTTAGCAAATGAATGAGTTCACCAGGGTTACTTACTGGATA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCAACTTTAGCAAATGAATGAGTTCACCAGGGTTACTTACTGGATA  582

seq1  GTGGATGACTAAAGGCACCTGCATCACCAAAAAGGCCACCATACCTTTGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGACTAAAGGCACCTGCATCACCAAAAAGGCCACCATACCTTTGT  632

seq1  TCATGTGTCAAGAGAGCTTCATTCTGGAGTTCCCTACCCAACTTGTAGAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGTCAAGAGAGCTTCATTCTGGAGTTCCCTACCCAACTTGTAGAA  682

seq1  AGTTCCATCAGAGCATCTCTTCTCACTAGCAATTGTTTGCAGCTTTTATA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCATCAGAGCATCTCTTCTCACTAGCAATTGTTTGCAGCTTTTATA  732

seq1  ATTATGGGAAGGAACCTTATAAATATTGTAGCTTTCTAGCCTGTCTGACT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGGGAAGGAACCTTATAAATATTGTAGCTTTCTAGCCTGTCTGACT  782

seq1  AGCCTTGTAAGTTTCATTGGTCTCTTAAGTCTTCTGAAACTCATCTCTGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGTAAGTTTCATTGGTCTCTTAAGTCTTCTGAAACTCATCTCTGT  832

seq1  CTCTAGGAAGGAAAATTTAAAGTTGGAGGGACACTTCTCTGGAGAGCCCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGAAGGAAAATTTAAAGTTGGAGGGACACTTCTCTGGAGAGCCCT  882

seq1  GGAATGTTGGGAGGAGATTCATCTAGAGTTCTGGAATATGTGAGCTTTTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTTGGGAGGAGATTCATCTAGAGTTCTGGAATATGTGAGCTTTTG  932

seq1  TTTGTTTGTTTGTTTTCTTGTCCAGTGAAAGCAAAAATGTCCTGGGTGAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGTTTTCTTGTCCAGTGAAAGCAAAAATGTCCTGGGTGAT  982

seq1  CCCAGTCTGATTCTCTTTATAGTGTTCATTCCCCTAAAGATAGACACACA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTCTGATTCTCTTTATAGTGTTCATTCCCCTAAAGATAGACACACA  1032

seq1  GTATGGCAATCAAATGTCTACATACAAAGAGGGCTTTTTAAAGGTCACGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGCAATCAAATGTCTACATACAAAGAGGGCTTTTTAAAGGTCACGT  1082

seq1  GGCATATGCTTCTTCAGGAATTCAGGAATTCTTCATGAGTTCAGGAATTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATATGCTTCTTCAGGAATTCAGGAATTCTTCATGAGTTCAGGAATTC  1132

seq1: chr7_90013885_90014902
seq2: B6Ng01-001N18.g_70_1088

seq1  GAATTCTCTACTGGTCAGCGAACTCTCTCTGCACCACCATTTTCTTACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTACTGGTCAGCGAACTCTCTCTGCACCACCATTTTCTTACCC  50

seq1  CCACCCCCACCCCGTCCACTCCCGCCCCTTATAGAACTGATTCTTTGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCCACCCCGTCCACTCCCGCCCCTTATAGAACTGATTCTTTGAAG  100

seq1  AAAAACACAGCCAGCTTGGGGAAGCTGACGTAAACATCCTGAGGAAATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACACAGCCAGCTTGGGGAAGCTGACGTAAACATCCTGAGGAAATAG  150

seq1  CCACAGTAAAGCCGCACCTCAGCCTCATTTCCCTAGGGAAATAATCAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTAAAGCCGCACCTCAGCCTCATTTCCCTAGGGAAATAATCAGCA  200

seq1  CCTCTGCCCCGAGACAGCTCCAGGTGAGTTTGGAGCTTGGGATCACCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCCCGAGACAGCTCCAGGTGAGTTTGGAGCTTGGGATCACCTTC  250

seq1  GCACGCTTGGAAGTGCAGGCGCTGGCAGAACAGTCCGCTCCCAAGTGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGCTTGGAAGTGCAGGCGCTGGCAGAACAGTCCGCTCCCAAGTGCAC  300

seq1  TGCCAACCATTGTCACTTTTAACCACCCAGGCATTGGGCAGGGGAGGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACCATTGTCACTTTTAACCACCCAGGCATTGGGCAGGGGAGGTAT  350

seq1  TGTGGATAAAAGCCGAGGTGCGGGGTGATCCCTTTTTTCTGGGTCCCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATAAAAGCCGAGGTGCGGGGTGATCCCTTTTTTCTGGGTCCCTCA  400

seq1  GATCTGCCCCAGGTCCCCAGGGTCGCCCCCAGCGGGGAAGGGGTTCTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCCCCAGGTCCCCAGGGTCGCCCCCAGCGGGGAAGGGGTTCTCCA  450

seq1  GTAAACCAGTCTGCGGTGTACACAAGTCGCCTCGGAATCACCAGGAGGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACCAGTCTGCGGTGTACACAAGTCGCCTCGGAATCACCAGGAGGCG  500

seq1  TCTCTCCCGGCAGACCTTAACAGGATTAGGGAAAGCCTGGACTACTAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCGGCAGACCTTAACAGGATTAGGGAAAGCCTGGACTACTAGCC  550

seq1  TGCAGGGCGCAGGGGCGCGGATAAACAGGCGGGCTCCGGGAACAAAGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGGCGCAGGGGCGCGGATAAACAGGCGGGCTCCGGGAACAAAGGAC  600

seq1  GGAGAAGCGGATGCGCTTTGAGCAGGGAAGGGGCGTCCTCCTCTCGCAGG  650
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGAGAAGCGGATGCGCTTTGAGCAGGGAAGGGGCGTGCTCCTCTCGCAGG  650

seq1  AGGGAGATGCGCCGAGGCCCGAACCCCGCCCCGGCCCGCCCCTCAAAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGATGCGCCGAGGCCCGAACCCCGCCCCGGCCCGCCCCTCAAAACC  700

seq1  TCCTTTCTTTTCGCTTGCGCTCGGAGGCTATCGGTGGAGAAGCCAGGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTTTTCGCTTGCGCTCGGAGGCTATCGGTGGAGAAGCCAGGAGG  750

seq1  GGGCGCAGTTCGCCTTGGCCGCCCGCTAGTCCTGTCGCACCC-TTCCTCC  799
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGGCGCAGTTCGCCTTGGCCGCCCGCTAGTCCTGTCGCACCCTTTCCTCC  800

seq1  GCCGCCTCCCCCAACCCGAGAAGCGCACAAAGAGCGCCAGGCCCGACCAC  849
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTCTCCCCCAACCCGAGAAGCGCACAAAGAGCGCCAGGCCCGACCAC  850

seq1  ACACCTCCCGGCGGGGCCGGGCTGGGCGGAGGGCGGGGCCGGCGCGCTCT  899
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACACCTCCCGGCGGGGCCGGGCTGGGCGGAGGTCGGGGCCGGCGCGCTCT  900

seq1  GGGCTCCTCTCAGGCACTGCGCATGCCTGACCGCAGGGA-GGGGCGGGCC  948
      ||||| ||||||||||||||||||||||||||||||| | ||||||||||
seq2  GGGCTTCTCTCAGGCACTGCGCATGCCTGACCGCAGGTAGGGGGCGGGCC  950

seq1  TGGGAGCGGCGGGCGCGCACGC-CCTCACTGTTCCCGGGCAGTGTAGGGC  997
      ||||||||||||| |||||||| | ||| |||| ||||||| ||||||||
seq2  TGGGAGCGGCGGGTGCGCACGCTCTTCATTGTTTCCGGGCA-TGTAGGGC  999

seq1  TGGCGTCCCGGCAGTGGGCGC  1018
      ||||||||| |||||||||||
seq2  TGGCGTCCC-GCAGTGGGCGC  1019