BAC Information

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BAC

Clone NameB6Ng01-001P24
Chromosome7 (Build37)
Map Location 148,968,932 - 149,096,814
singlet/doubletdoublet
Overlap geneMuc5ac, Muc5b, Tollip
Upstream geneSyce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2
Downstream geneEG623757, Brsk2, 2700078K21Rik, Dusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd, Syt8, Tnni2, Lsp1, ENSMUSG00000043795, Tnnt3, Mrpl23, Nctc1, H19, Igf2, Igf2as, Ins2, EG640264, EG624121, Th
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001P24.bB6Ng01-001P24.g
ACCDH840155DH840156
length1,0731,113
definitionDH840155|Mus musculus domesticus DNA, BAC clone: B6Ng01-001P24, 5' end.DH840156|Mus musculus domesticus DNA, BAC clone: B6Ng01-001P24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,968,932 - 148,970,003)(149,095,705 - 149,096,814)
sequence
gaattcatcttttctttcccttccttccttccttccttcctttctttctt
tctttctttctttctttctttctttctttctttctttctttctttctttc
tttctccctttcttccttccttccttcctttctttctttctttctttctt
tctttctttctttctttctttctttctttctttctttctttcttttttta
agttcaagaaaggtctcactatatagtgctggctgtcctggaacaagttt
gtagatcagactgccctcaaattcccagagatgtacctgcctctgtttct
tgagtactaggattaaagttgtgttgtaccaggttcagcccagaaattta
tctttctatgtctgatttatttcacatgcaacaatcctctgcccctgact
tttgagacaagatatctttctatgttatcctgggtgacctcaaacttgct
acctttctgcctcaggctcagggtgctagggttacaggtgtatgttgggt
aacatttggtatgtggacacaggatgtcttgtgcaagtaccagtggattt
tgtgagtagtgttttggtgagcctgaatattcaaacatctcttagagact
cctattgttctgggtgtgcgtccagaagcaatacttttctatgactatac
atttcaatagatgtgattgtgtgtgtgtctgtgtgtgcatgaatgtgtat
acttgtgtgtgtataggtgtgtgcacctgcttgggcatgctcgcgtgtgg
gaatttgcatgtggaggccacaggttgttgctaaatatcgtcttcaacca
ttctgaaggctggttactgagacagctccttttttttttttttttactga
gtggtggagtcattgattctactagacttggtgaccagcaatcttccagg
gaatcccctgtccctgacttcccgtgttggtttctatgtttgccaggcta
ttttttttatgaggatccaacagcaggtccttaagcttgcctggcatgca
ctctactgtcagaatattcctcctagctcttggaatgacgaataatggag
gagtgttctttaatacactgacc
gaattcaatagtagttattggaccaaccgtattaggaattgctgatctgt
tttttaattaaaacatttcttgtatctatatgtacaagttatatataacc
ctttgttatatacaatataaccttttaaggtgttatatacatacacacac
acacacaaatacatacatatatgctctatttccaataaatataagctatt
tgagaaattgaattttagagagcagtttgtggagaattgttcaatttcaa
atacgagccttccacaatgccttcctcaacttaaactttaacccaaaagt
ttcttttttccactaaattgtttttgttatgtatttgtcacaacgatgag
aaaaaataaaatgcatattaactattctttaaaaacctcttagtggttgg
cctgtttgatgttagataaatgtttccatctaacagaacacagctccaca
ggtggtatgaacgcagtaagagaaataactctaatgcttccccctgaccc
tgtacagattcattctgcacattctgccatttaccaaaagcacaaatagg
ctgaaatcctcaaagatgtcgtcatgagtgtatttgaataagcttacctg
tcatgctttggctttgtctggtcctgtcttttttctttttctttctctct
cctccctccccctttccttccttcctgataaggctgatctcaaactcaca
gtcctcctcaacgattttttttttttaagagctagaattaccagtgtgta
tcaccaggactggcaactttacctaaattaaagatttatttatttactat
tttatgtatttgagtgatctatctccatatacatctgcatgtgacaagag
ggcatcagatcacattttagatggttgtgagccaccatgtggttgctggg
aactgaacttaggatttctggaagagcagccagcactcctaatcgctgag
ccatctcttcagcctctcctcttacctaaattaatgtcaactaaaaaatg
aggaaaattgacgttttattttggccttcactggtttctttctctggtgt
tctcctttaatatggtctgagtactgaatttatcacctcacccattaata
aagaaacttgctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_148968932_148970003
seq2: B6Ng01-001P24.b_47_1119

seq1  GAATTCATCTTTTCTTTCCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTTTCTTTCCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTT  50

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  100

seq1  TTTCTCCCTTTCTTCCTTCCTTCCTTC----CTTTCTTTCTTTCTTTCTT  146
      |||||||||||||||||||||||||||    |||||||||||||||||||
seq2  TTTCTCCCTTTCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTT  150

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTA  200

seq1  AGTTCAAGAAAGGTCTCACTATATAGTGCTGGCTGTCCTGGAACAAGTTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAGAAAGGTCTCACTATATAGTGCTGGCTGTCCTGGAACAAGTTT  250

seq1  GTAGATCAGACTGCCCTCAAATTCCCAGAGATGTACCTGCCTCTGTTTCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATCAGACTGCCCTCAAATTCCCAGAGATGTACCTGCCTCTGTTTCT  300

seq1  TGAGTACTAGGATTAAAGTTGTGTTGTACCAGGTTCAGCCCAGAAATTTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACTAGGATTAAAGTTGTGTTGTACCAGGTTCAGCCCAGAAATTTA  350

seq1  TCTTTCTATGTCTGATTTATTTCACATGCAACAATCCTCTGCCCCTGACT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTATGTCTGATTTATTTCACATGCAACAATCCTCTGCCCCTGACT  400

seq1  TTTGAGACAAGATATCTTTCTATGTTATCCTGGGTGACCTCAAACTTGCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGACAAGATATCTTTCTATGTTATCCTGGGTGACCTCAAACTTGCT  450

seq1  ACCTTTCTGCCTCAGGCTCAGGGTGCTAGGGTTACAGGTGTATGTTGGGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCTGCCTCAGGCTCAGGGTGCTAGGGTTACAGGTGTATGTTGGGT  500

seq1  AACATTTGGTATGTGGACACAGGATGTCTTGTGCAAGTACCAGTGGATTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTGGTATGTGGACACAGGATGTCTTGTGCAAGTACCAGTGGATTT  550

seq1  TGTGAGTAGTGTTTTGGTGAGCCTGAATATTCAAACATCTCTTAGAGACT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTAGTGTTTTGGTGAGCCTGAATATTCAAACATCTCTTAGAGACT  600

seq1  CCTATTGTTCTGGGTGTGCGTCCAGAAGCAATACTTTTCTATGACTATAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTGTTCTGGGTGTGCGTCCAGAAGCAATACTTTTCTATGACTATAC  650

seq1  ATTTCAATAGATGTGATTGTGTGTGTGTCTGTGTGTGCATGAATGTGTAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAATAGATGTGATTGTGTGTGTGTCTGTGTGTGCATGAATGTGTAT  700

seq1  ACTTGTGTGTGTATAGGTGTGTGCACCTGCTTGGGCATGCTCGCGTGTGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGTGTGTATAGGTGTGTGCACCTGCTTGGGCATGCTCGCGTGTGG  750

seq1  GAATTTGCATGTGGAGGCCACAGGTTGTTGCTAAATATCGTCTTCAACCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGCATGTGGAGGCCACAGGTTGTTGCTAAATATCGTCTTCAACCA  800

seq1  TTCTGAAGGCTGGTTACTGAGACAGCTCCTTTTTTTTTTTTTTTTACTGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGGCTGGTTACTGAGACAGCTCCTTTTTTTTTTTTTTTTACTGA  850

seq1  GT-GTGGAGTCATTGATTCTACTAGACTTGGTGACCAGCAATC-TCCAGG  894
      || |||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTGGTGGAGTCATTGATTCTACTAGACTTGGTGACCAGCAATCTTCCAGG  900

seq1  GATCCCCCTGTCCCTGACTTCCCGTGTTGGTTTTCTATGTTTGCCAGGCT  944
      ||  |||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAATCCCCTGTCCCTGACTTCCCGTGTTGG-TTTCTATGTTTGCCAGGCT  949

seq1  ATTTTTTTTTATGAGGATCCAAACAGCAGGTCCTTAAGCTTGCCTGGCAT  994
      | |||||||||||||||||| |||||||||||||||||||||||||||||
seq2  A-TTTTTTTTATGAGGATCC-AACAGCAGGTCCTTAAGCTTGCCTGGCAT  997

seq1  GCACTCTACTGTCAGAATAATCCTCCTAGCCCCTGGATATGACGGATTAT  1044
      ||||||||||||||||||| |||||||||| | |||| |||||| || ||
seq2  GCACTCTACTGTCAGAATATTCCTCCTAGCTCTTGGA-ATGACGAATAAT  1046

seq1  TGAGGAGTGTTCTTTAAATACACTGACC  1072
       |||||||||||||| ||||||||||||
seq2  GGAGGAGTGTTCTTT-AATACACTGACC  1073

seq1: chr7_149095705_149096814
seq2: B6Ng01-001P24.g_69_1181 (reverse)

seq1  AAGCAAGTT--CTTATGATGGGGTGA-GTGATAACATCAGTAACTCAGAC  47
      |||||||||   |||| |  |||||| |||||||  ||||| ||||||| 
seq2  AAGCAAGTTTCTTTATTAATGGGTGAGGTGATAAATTCAGT-ACTCAGA-  48

seq1  CCATATAAAGGAAGAACAACAGAG-AAGAAACCAGTGAAGGCAAAATAAA  96
      |||||| || | |||||| ||||| ||||||||||||||||| |||  ||
seq2  CCATATTAAAGGAGAACACCAGAGAAAGAAACCAGTGAAGGCCAAAATAA  98

seq1  AACGTCAATTTTCCTCATTTTTTAGTTGACATTTAATTTAGGTAAGAGG-  145
      ||||||||||||||||||||||||||||||| ||||||||||||||||| 
seq2  AACGTCAATTTTCCTCATTTTTTAGTTGACA-TTAATTTAGGTAAGAGGA  147

seq1  GGGGCTGGAGAGATGGCTCAGCGATTAGGAGTGCTGGCTGCTCTTCCAGA  195
      | ||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGAAGAGATGGCTCAGCGATTAGGAGTGCTGGCTGCTCTTCCAGA  197

seq1  AATCCTAAGTTCAGTTCCCAGCAACCACATGGTGGCTCACAACCATCTAA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTAAGTTCAGTTCCCAGCAACCACATGGTGGCTCACAACCATCTAA  247

seq1  AATGTGATCTGATGCCCTCTTGTCACATGCAGATGTATATGGAGATAGAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGATCTGATGCCCTCTTGTCACATGCAGATGTATATGGAGATAGAT  297

seq1  CACTCAAATACATAAAATAGTAAATAAATAAATCTTTAATTTAGGTAAAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAAATACATAAAATAGTAAATAAATAAATCTTTAATTTAGGTAAAG  347

seq1  TTGCCAGTCCTGGTGATACACACTGGTAATTCTAGCTCTT-GAAAAAAAA  394
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  TTGCCAGTCCTGGTGATACACACTGGTAATTCTAGCTCTTAAAAAAAAAA  397

seq1  AATCGTTGAGGAGGACTGTGAGTTTGAGATCAGCCTTATCAGGAAGGAAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGTTGAGGAGGACTGTGAGTTTGAGATCAGCCTTATCAGGAAGGAAG  447

seq1  GAAAGGGGGAGGGAGGAGAGAGAAAGAAAAAGAAAAAAGACAGGACCAGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGGGAGGGAGGAGAGAGAAAGAAAAAGAAAAAAGACAGGACCAGA  497

seq1  CAAAGCCAAAGCATGACAGGTAAGCTTATTCAAATACACTCATGACGACA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCAAAGCATGACAGGTAAGCTTATTCAAATACACTCATGACGACA  547

seq1  TCTTTGAGGATTTCAGCCTATTTGTGCTTTTGGTAAATGGCAGAATGTGC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAGGATTTCAGCCTATTTGTGCTTTTGGTAAATGGCAGAATGTGC  597

seq1  AGAATGAATCTGTACAGGGTCAGGGGGAAGCATTAGAGTTATTTCTCTTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAATCTGTACAGGGTCAGGGGGAAGCATTAGAGTTATTTCTCTTA  647

seq1  CTGCGTTCATACCACCTGTGGAGCTGTGTTCTGTTAGATGGAAACATTTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGTTCATACCACCTGTGGAGCTGTGTTCTGTTAGATGGAAACATTTA  697

seq1  TCTAACATCAAACAGGCCAACCACTAAGAGGTTTTTAAAGAATAGTTAAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACATCAAACAGGCCAACCACTAAGAGGTTTTTAAAGAATAGTTAAT  747

seq1  ATGCATTTTATTTTTTCTCATCGTTGTGACAAATACATAACAAAAACAAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTTTATTTTTTCTCATCGTTGTGACAAATACATAACAAAAACAAT  797

seq1  TTAGTGGAAAAAAGAAACTTTTGGGTTAAAGTTTAAGTTGAGGAAGGCAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGGAAAAAAGAAACTTTTGGGTTAAAGTTTAAGTTGAGGAAGGCAT  847

seq1  TGTGGAAGGCTCGTATTTGAAATTGAACAATTCTCCACAAACTGCTCTCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAGGCTCGTATTTGAAATTGAACAATTCTCCACAAACTGCTCTCT  897

seq1  AAAATTCAATTTCTCAAATAGCTTATATTTATTGGAAATAGAGCATATAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCAATTTCTCAAATAGCTTATATTTATTGGAAATAGAGCATATAT  947

seq1  GTATGTATTTGTGTGTGTGTGTGTATGTATATAACACCTTAAAAGGTTAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTATTTGTGTGTGTGTGTGTATGTATATAACACCTTAAAAGGTTAT  997

seq1  ATTGTATATAACAAAGGGTTATATATAACTTGTACATATAGATACAAGAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATATAACAAAGGGTTATATATAACTTGTACATATAGATACAAGAA  1047

seq1  ATGTTTTAATTAAAAAACAGATCAGCAATTCCTAATACGGTTGGTCCAAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTAATTAAAAAACAGATCAGCAATTCCTAATACGGTTGGTCCAAT  1097

seq1  AACTACTATTGAATTC  1110
      ||||||||||||||||
seq2  AACTACTATTGAATTC  1113