BAC Information

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BAC

Clone NameB6Ng01-002F04
Chromosome7 (Build37)
Map Location 143,617,465 - 143,733,134
singlet/doubletdoublet
Overlap genenone
Upstream geneClrn3, Ptpre, Mki67, LOC668764
Downstream geneLOC546009, EG621677, EG668771, Mgmt, EG621804, Ebf3, 9430038I01Rik, Txnl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002F04.bB6Ng01-002F04.g
ACCDH840384DH840385
length1,0471,166
definitionDH840384|Mus musculus domesticus DNA, BAC clone: B6Ng01-002F04, 5' end.DH840385|Mus musculus domesticus DNA, BAC clone: B6Ng01-002F04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,617,465 - 143,618,508)(143,731,964 - 143,733,134)
sequence
gaattcttttatcatctattttgcacaatttatttacatttcccttctat
ctgttcagtgtcctttttctattgcaggattcctccagggccccagtgga
cttttggccttcatgtctgcttttctccggctatctgtggtttggatggc
cctgacacttcataaggacctggtcaggaatttcatcaaacatccctctt
ctgtcatggatgtaccgtttcctcagagtatggaaggggtcatgttttaa
cagtgtctctcaatctttctaatgctgtgaccctttaatacagtttctta
tgttgtagtgacctccccaaccataaaatcattccattgctacttcataa
ctgtaaattgtgctactgttatgaattgtaatgcaaatagccgatatgta
ggctacctgatatggaggcagaattcatcatgaattgaaacgcccagcat
acagttatagatggcagctagccgaggacatcacctccaggtccttcaga
atcacagggatggaagcagctgctctctgagaacaggatgtccccctgga
ttctccaaagatgatagccctgtgtcagatgtccccgtagctaagatctc
tatcacttcttctccatatcctcatctttcaaagacaggttatgcaggcc
atgttcgagacagagctgtagtcacactccacccctgtgaaggtgtagtc
aatatattcagggtggttttgcatcaaagatttgtctgatttatgtccat
ctcattatttatttttatcagcatgggcttataggcatttatcaaatact
ttgattataatttgctactatttttttttcatttttagccatccgagttt
tgcatttggtatctttggcatatacgggagttgaacttttccatttttgt
gtgtttgtatgtttttatagatgataaaaatatattatgtgtatctatct
ctatctacatgtctatgcatatgtttgtctctctatgtctctaggttgtt
gatatgggcatcttgatgtatttgtctctctatgtccttaggtgtgt
gaattctaagccaacgagaaacttgtctccagaatagggtggactatctt
taggcctatgcacatggacttgaacacatacacacatacacacgcacaca
cacacacacacacacactacacacgcacacacacacacacacacacacac
acagagggagagagagagagagagagagagagaaagagagagagagagag
agagagagagagagagagagagagagagagagagagagagagagaatcaa
aatagatagcaggcatggggaactgttgtctttattcaggaggaatttgg
ctcaggtgttaactgatgtggtgtagatttcatttttatttcatctcaac
atccaagcttctctgaacaaggggagcagaaagagaacagggtatctcca
actctgagggagaaagaatttcactttgctgaactgtacaacctctgcct
cgactgctgccagaatagcttaaaaccctgtaggcagccagcgcagtcat
tcacttccttctgatccaatcagagagtacggcaggaagggattggagaa
ctctttgtatggaatcttttaattgatttttaaaaattgaactcatagtt
ttcaattatacatctccttaaattctatgctgaagagaaatattcataac
tataatgacagcaaggggagacataaatcatgccagaaccagtatgcagc
aatcacaaaaggtggaccaaacatgaaataccataaacttgggtgtcaca
atctatctattaacagtgtgagggaaaatgatcctctttataacttcggc
aaaatcaagagttttttattattaaacaggaaacaaatcatgtgttctca
atgacccaaaaagttgtgcatcccagtactagcccatcaacaagaaaatt
ccatcccgtctactaagatgagtaacatggaattggtggtccctgcgtga
gctcattctatcagttcctttacactttactgcgttccaagcttcaatct
tggaactaccggtctcaggcagcaatgccaccttccttctcatctttcag
tgagcacagttgcctctgagctctgtgtgaacatccactgccaacgtggt
tgcctaacatgccttctctggtctactgcacccttttctctctagtgtga
gatgaagacacttttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_143617465_143618508
seq2: B6Ng01-002F04.b_47_1093

seq1  GAATTCTTTTATCATCTATTTTGCACAATTTATTTACATTTCCCTTCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTATCATCTATTTTGCACAATTTATTTACATTTCCCTTCTAT  50

seq1  CTGTTCAGTGTCCTTTTTCTATTGCAGGATTCCTCCAGGGCCCCAGTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCAGTGTCCTTTTTCTATTGCAGGATTCCTCCAGGGCCCCAGTGGA  100

seq1  CTTTTGGCCTTCATGTCTGCTTTTCTCCGGCTATCTGTGGTTTGGATGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGCCTTCATGTCTGCTTTTCTCCGGCTATCTGTGGTTTGGATGGC  150

seq1  CCTGACACTTCATAAGGACCTGGTCAGGAATTTCATCAAACATCCCTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACACTTCATAAGGACCTGGTCAGGAATTTCATCAAACATCCCTCTT  200

seq1  CTGTCATGGATGTACCGTTTCCTCAGAGTATGGAAGGGGTCATGTTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATGGATGTACCGTTTCCTCAGAGTATGGAAGGGGTCATGTTTTAA  250

seq1  CAGTGTCTCTCAATCTTTCTAATGCTGTGACCCTTTAATACAGTTTCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCTCTCAATCTTTCTAATGCTGTGACCCTTTAATACAGTTTCTTA  300

seq1  TGTTGTAGTGACCTCCCCAACCATAAAATCATTCCATTGCTACTTCATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTAGTGACCTCCCCAACCATAAAATCATTCCATTGCTACTTCATAA  350

seq1  CTGTAAATTGTGCTACTGTTATGAATTGTAATGCAAATAGCCGATATGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAATTGTGCTACTGTTATGAATTGTAATGCAAATAGCCGATATGTA  400

seq1  GGCTACCTGATATGGAGGCAGAATTCATCATGAATTGAAACGCCCAGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACCTGATATGGAGGCAGAATTCATCATGAATTGAAACGCCCAGCAT  450

seq1  ACAGTTATAGATGGCAGCTAGCCGAGGACATCACCTCCAGGTCCTTCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTATAGATGGCAGCTAGCCGAGGACATCACCTCCAGGTCCTTCAGA  500

seq1  ATCACAGGGATGGAAGCAGCTGCTCTCTGAGAACAGGATGTCCCCCTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGGGATGGAAGCAGCTGCTCTCTGAGAACAGGATGTCCCCCTGGA  550

seq1  TTCTCCAAAGATGATAGCCCTGTGTCAGATGTCCCCGTAGCTAAGATCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAAAGATGATAGCCCTGTGTCAGATGTCCCCGTAGCTAAGATCTC  600

seq1  TATCACTTCTTCTCCATATCCTCATCTTTCAAAGACAGGTTATGCAGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTTCTTCTCCATATCCTCATCTTTCAAAGACAGGTTATGCAGGCC  650

seq1  ATGTTCGAGACAGAGCTGTAGTCACACTCCACCCCTGTGAAGGTGTAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCGAGACAGAGCTGTAGTCACACTCCACCCCTGTGAAGGTGTAGTC  700

seq1  AATATATTCAGGGTGGTTTTGCATCAAAGATTTGTCTGATTTATGTCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTCAGGGTGGTTTTGCATCAAAGATTTGTCTGATTTATGTCCAT  750

seq1  CTCATTATTTATTTTTATCAGCATGGGCTTATAGGCATTTATCAAATACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTATTTATTTTTATCAGCATGGGCTTATAGGCATTTATCAAATACT  800

seq1  TTGATTATAATTTGCTACTATTTTTTTTTCATTTTTAGCCATCCGAGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTATAATTTGCTACTATTTTTTTTTCATTTTTAGCCATCCGAGTTT  850

seq1  TGCATTTGGTATCTTTGGCATATACGGGAG-TGAACTTTTCCA-TTTTGT  898
      |||||||||||||||||||||||||||||| |||||||||||| ||||||
seq2  TGCATTTGGTATCTTTGGCATATACGGGAGTTGAACTTTTCCATTTTTGT  900

seq1  GTGTTTGTATG-TTTTATAGATGAT-AGAATATA-TATGTGTATCTATCT  945
      ||||||||||| ||||||||||||| | |||||| |||||||||||||||
seq2  GTGTTTGTATGTTTTTATAGATGATAAAAATATATTATGTGTATCTATCT  950

seq1  CTATCTACATGTCTATGCATATGTTTGTCTCTCTATGTCTCTAGGTGTGT  995
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTATCTACATGTCTATGCATATGTTTGTCTCTCTATGTCTCTAGGT-TGT  999

seq1  TGATATGTGCATCTTTGATGTATTTGTCTCTCTATGTCCCTAGGTGTGT  1044
      ||||||| ||||| ||||||||||||||||||||||||| |||||||||
seq2  TGATATGGGCATC-TTGATGTATTTGTCTCTCTATGTCCTTAGGTGTGT  1047

seq1: chr7_143731964_143733134
seq2: B6Ng01-002F04.g_70_1235 (reverse)

seq1  GAAAA-TGTCTTCATCTTTCCACACTTGA-AGAAAAGGGTGCAG-AGAGC  47
      ||||| |||||||||||   |||||| || |||||||||||||| ||| |
seq2  GAAAAGTGTCTTCATCT---CACACTAGAGAGAAAAGGGTGCAGTAGACC  47

seq1  AGGAGAGAGGCATGTTAGGCACCCACGTTGGCAGTGCCCTGA--TACACA  95
      | |||| |||||||||||||| ||||||||||||||    ||  | ||||
seq2  A-GAGA-AGGCATGTTAGGCAACCACGTTGGCAGTG----GATGTTCACA  91

seq1  CAGAGGCCTCAGAGGCATACTGTGCTCACTG-AAGCTGAGGAGGGAAGGT  144
      |||||  |||||||||| ||||||||||||| ||| ||| || |||||||
seq2  CAGAG--CTCAGAGGCA-ACTGTGCTCACTGAAAGATGA-GAAGGAAGGT  137

seq1  GGCATTGCTGCCTGAGACCGTGTAGTTCTAAGATAGAAGCTTGGAACGCA  194
      |||||||||||||||||||| ||||||| ||||| |||||||||||||||
seq2  GGCATTGCTGCCTGAGACCG-GTAGTTCCAAGATTGAAGCTTGGAACGCA  186

seq1  GT-AAGGGTAAAGGAACTGATAGGATGAGCTCACGCAGGGA-CACCAATT  242
      || ||| |||||||||||||||| ||||||||||||||||| ||||||||
seq2  GTAAAGTGTAAAGGAACTGATAGAATGAGCTCACGCAGGGACCACCAATT  236

seq1  CCATGTTACTCATCTTAGTAGACGGGATGGAA-TTTCTTGTTGATGGGCT  291
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CCATGTTACTCATCTTAGTAGACGGGATGGAATTTTCTTGTTGATGGGCT  286

seq1  AGTACTGGGATGCACACCTTTTTGGGTCATTGAGAACACATGATTTGTTT  341
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGTACTGGGATGCACAACTTTTTGGGTCATTGAGAACACATGATTTGTTT  336

seq1  CCTGTTTAATAAT-AAAAACTCTTGATTTTTGCCGAAGTTATAAAGAGGA  390
      ||||||||||||| |||||||||||| |||||||||||||||||||||||
seq2  CCTGTTTAATAATAAAAAACTCTTGA-TTTTGCCGAAGTTATAAAGAGGA  385

seq1  TCATTTTCCCTCACACTGTTAATAGATAGATTGTGACACCCAAGTTTATG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTCCCTCACACTGTTAATAGATAGATTGTGACACCCAAGTTTATG  435

seq1  GTATTTCATGTTTGGTCCACCTTTTGTGATTGCTGCATACTGGTTCTGGC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCATGTTTGGTCCACCTTTTGTGATTGCTGCATACTGGTTCTGGC  485

seq1  ATGATTTATGTCTCCCCTTGCTGTCATTATAGTTATGAATATTTCTCTTC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTATGTCTCCCCTTGCTGTCATTATAGTTATGAATATTTCTCTTC  535

seq1  AGCATAGAATTTAAGGAGATGTATAATTGAAAACTATGAGTTCAATTTTT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGAATTTAAGGAGATGTATAATTGAAAACTATGAGTTCAATTTTT  585

seq1  AAAAATCAATTAAAAGATTCCATACAAAGAGTTCTCCAATCCCTTCCTGC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCAATTAAAAGATTCCATACAAAGAGTTCTCCAATCCCTTCCTGC  635

seq1  CGTACTCTCTGATTGGATCAGAAGGAAGTGAATGACTGCGCTGGCTGCCT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACTCTCTGATTGGATCAGAAGGAAGTGAATGACTGCGCTGGCTGCCT  685

seq1  ACAGGGTTTTAAGCTATTCTGGCAGCAGTCGAGGCAGAGGTTGTACAGTT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTTTTAAGCTATTCTGGCAGCAGTCGAGGCAGAGGTTGTACAGTT  735

seq1  CAGCAAAGTGAAATTCTTTCTCCCTCAGAGTTGGAGATACCCTGTTCTCT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAGTGAAATTCTTTCTCCCTCAGAGTTGGAGATACCCTGTTCTCT  785

seq1  TTCTGCTCCCCTTGTTCAGAGAAGCTTGGATGTTGAGATGAAATAAAAAT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTCCCCTTGTTCAGAGAAGCTTGGATGTTGAGATGAAATAAAAAT  835

seq1  GAAATCTACACCACATCAGTTAACACCTGAGCCAAATTCCTCCTGAATAA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTACACCACATCAGTTAACACCTGAGCCAAATTCCTCCTGAATAA  885

seq1  AGACAACAGTTCCCCATGCCTGCTATCTATTTTGATTCTCTCTCTCTCTC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACAGTTCCCCATGCCTGCTATCTATTTTGATTCTCTCTCTCTCTC  935

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTC  985

seq1  TCTCTCTCTCTCTCTCTCTCTCTCCCTCTGTGTGTGTGTGTGTGTGTGTG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCCCTCTGTGTGTGTGTGTGTGTGTGTG  1035

seq1  TGTGTGCGTGTGTAGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTATGTGT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCGTGTGTAGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTATGTGT  1085

seq1  GTATGTGTTCAAGTCCATGTGCATAGGCCTAAAGATAGTCCACCCTATTC  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGTTCAAGTCCATGTGCATAGGCCTAAAGATAGTCCACCCTATTC  1135

seq1  TGGAGACAAGTTTCTCGTTGGCTTAGAATTC  1171
      |||||||||||||||||||||||||||||||
seq2  TGGAGACAAGTTTCTCGTTGGCTTAGAATTC  1166