BAC Information

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BAC

Clone NameB6Ng01-002K09
Chromosome7 (Build37)4 (Build37)
Map Location 78,294,131 - 78,294,89229,341,351 - 29,341,402
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneNr2f2, LOC100042833, B130024G19Rik, LOC100042838, LOC665486, LOC100041957
Downstream geneLOC665535, Mctp2, LOC100042873
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002K09.bB6Ng01-002K09.g
ACCDH840610DH840611
length765632
definitionDH840610|Mus musculus domesticus DNA, BAC clone: B6Ng01-002K09, 5' end.DH840611|Mus musculus domesticus DNA, BAC clone: B6Ng01-002K09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(78,294,131 - 78,294,892)(29,341,351 - 29,341,402)
sequence
gaattcataaagagaaagagagaaagaggcaagaaacaagttattaaaca
agccactaaggccatagaaatagaagtgtagatcagagagatatcgataa
cgagtctattcagctatttcatgggggcagagattcctgatggacaacat
acagcaacagtggattatggttaatgatagagtactttccgtattggaga
tgagatcaagttccctcttccctccatccctcaaaccctttctgtctctt
tccctctcttctcacctttcatggtttatttcatttttcccccctaagga
actgaattcttacaatggagctgacacttttgaagctgaataaaatgaag
ttgaaggtgtcatctggagttgggaaagacctattagatattctagtaga
aataaaaaataaatagttcacttcaaaagtttgtagcctattgagctggt
gggagaaatttgttgtaaagtgtgtgcaatgcaagcatgaagacctgagg
ttggcctaagaagccacataaattgtcagtgtggagatgctcagtcatca
tccttgaacgagggaggtggagactggaagagccctggaattttgcctgc
cagaaagtccaccttaattagtttgccatatgtctcactgagatatgctg
tgccccaaatcaaaatagatggcttctgatgaacaatacttgaagttttt
ggactctacatgcatattcatagatacccatttatatatttcatacacac
acacacacacacaca
gaattcctgggagtgtcagtgggaatgtgttcattgagatcaatacagca
gagaaacgtcaactcttgtattctttgcagcatggctcacaattactggg
acagagattaacctcagtgtgcatcaacggatagaaaaaagaaccttcta
catatacacaacggaatgctaagccatcatttaaaagaatgcacatgtgt
catttgtaacagtttgggtggaactggacagcattatgtcatgtaaaata
tactagacacagaaagataagcacccttgacttccctcattaatatcata
tgaagaagctgttcttaaagaaattgatggtttaaaggtgatggtcagag
cctgggattaggaaaacactggatgcagaaaggataaggaatggctacta
agttaggggttacagagacaaagtttagagctgagacaaaaggatggacc
atccagagactgcctcacctggggacccatctcataatcagccaccaaac
acagacattattgcatatgccagcaagattttgctgaaaggaccctgaaa
tagctgtctcctgtgaggctataccagtgcttggcaaatacagaagtgaa
tgctcacagtcatggaacacagggcccccaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_78294131_78294892
seq2: B6Ng01-002K09.b_48_812

seq1  GAATTCATAAAGAGAAAGAGAGAAAGAGGCAAGAAACAAGTTATTAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAAGAGAAAGAGAGAAAGAGGCAAGAAACAAGTTATTAAACA  50

seq1  AGCCACTAAGGCCATAGAAATAGAAGTGTAGATCAGAGAGATATCGATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTAAGGCCATAGAAATAGAAGTGTAGATCAGAGAGATATCGATAA  100

seq1  CGAGTCTATTCAGCTATTTCATGGGGGCAGAGATTCCTGATGGACAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTCTATTCAGCTATTTCATGGGGGCAGAGATTCCTGATGGACAACAT  150

seq1  ACAGCAACAGTGGATTATGGTTAATGATAGAGTACTTTCCGTATTGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAACAGTGGATTATGGTTAATGATAGAGTACTTTCCGTATTGGAGA  200

seq1  TGAGATCAAGTTCCCTCTTCCCTCCATCCCTCAAACCCTTTCTGTCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCAAGTTCCCTCTTCCCTCCATCCCTCAAACCCTTTCTGTCTCTT  250

seq1  TCCCTCTCTTCTCACCTTTCATGGTTTATTTCATTTTTCCCCCCTAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTCTTCTCACCTTTCATGGTTTATTTCATTTTTCCCCCCTAAGGA  300

seq1  ACTGAATTCTTACAATGGAGCTGACACTTTTGAAGCTGAATAAAATGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATTCTTACAATGGAGCTGACACTTTTGAAGCTGAATAAAATGAAG  350

seq1  TTGAAGGTGTCATCTGGAGTTGGGAAAGACCTATTAGATATTCTAGTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGTGTCATCTGGAGTTGGGAAAGACCTATTAGATATTCTAGTAGA  400

seq1  AATAAAAAATAAATAGTTCACTTCAAAAGTTTGTAGCCTATTGAGCTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAATAAATAGTTCACTTCAAAAGTTTGTAGCCTATTGAGCTGGT  450

seq1  GGGAGAAATTTGTTGTAAAGTGTGTGCAATGCAAGCATGAAGACCTGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAATTTGTTGTAAAGTGTGTGCAATGCAAGCATGAAGACCTGAGG  500

seq1  TTGGCCTAAGAAGCCACATAAATTGTCAGTGTGGAGATGCTCAGTCATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTAAGAAGCCACATAAATTGTCAGTGTGGAGATGCTCAGTCATCA  550

seq1  TCCTTGAACGAGGGAGGTGGAGACTGGAAGAGCCCTGGAA-TTTGCCTGC  599
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCCTTGAACGAGGGAGGTGGAGACTGGAAGAGCCCTGGAATTTTGCCTGC  600

seq1  CAGAAAGTCCACCTTAATTAGTTTGCCATATGTCTCACTGAGATATGCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGTCCACCTTAATTAGTTTGCCATATGTCTCACTGAGATATGCTG  650

seq1  TGCCCCAAATCAAAATAGATGGCTTCTGATGAACAATACTTGAAG-TTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGCCCCAAATCAAAATAGATGGCTTCTGATGAACAATACTTGAAGTTTTT  700

seq1  GGACTCTACATGCATATTCATAGATACCCATTTATATA-TTCATACACAC  747
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGACTCTACATGCATATTCATAGATACCCATTTATATATTTCATACACAC  750

seq1  ACACACACACACACA  762
      |||||||||||||||
seq2  ACACACACACACACA  765

seq1: chr4_29341351_29341402
seq2: B6Ng01-002K09.g_656_698 (reverse)

seq1  ATTGGGGGCCCTGTGATCCATCCAATAGCTGACTGTGAGCATCCACTTCT  50
      ||||||||||||||| ||||         ||||||||||||| |||||||
seq2  ATTGGGGGCCCTGTGTTCCA---------TGACTGTGAGCATTCACTTCT  41

seq1  GT  52
      ||
seq2  GT  43