BAC Information

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BAC

Clone NameB6Ng01-003P01
Chromosome7 (Build37)
Map Location 84,684,127 - 84,791,005
singlet/doubletdoublet
Overlap genenone
Upstream geneEG244071
Downstream geneA330068G13Rik, Ntrk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003P01.bB6Ng01-003P01.g
ACCDH841496DH841497
length7961,236
definitionDH841496|Mus musculus domesticus DNA, BAC clone: B6Ng01-003P01, 5' end.DH841497|Mus musculus domesticus DNA, BAC clone: B6Ng01-003P01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,790,211 - 84,791,005)(84,684,127 - 84,685,352)
sequence
gaattcatggtacttgattgtttttagctctaaaatgatatcaatgtgaa
ggatttccccaagatttataatgacaaaaccaattgtcctgtatataggg
ttttgttttgttttgttttgtttgctttttgtcttattaatatgacaaac
tgtcattttacagtccaaagaattaataatttctgataaggtatttattt
atttatttatttatttatttatttatttatttatttatcgagacagggtt
tctctgtgtagccctggctgtcctggaactcactttgtaaaccaggctgg
tgttgaactcagaaatccgcctgcctctgcctcccaagtgctgagattaa
agacatgcaccaccacttcccaggtgacaaggtatttacaatacattaaa
atatctataagtatcactatataattctatttggaagaaaaagattctag
tggggatttattttctatatagatttaagagttttatcaatttaggattt
gaaaagttacctgaagtcaaccattttttcttgggttattaattttaaga
tcattcttccttcatttcaccaatatctcaataatatatttcacactcct
ccatgatgagacagcttgctctaagccatttgtttattctctttggatta
ctttatttaaaaattcttttctaaaatatattttatcataatctttccat
tccttcagcttctcccagatctcccatcacctttctgcattcaatctctc
tctctctctctctctctctctctctctctctctctctctctctctc
gaattcaatcttattttgaagcagaggagtgtgaagttattacaccatga
tcctgacatcagttttgatcgatggatcaattaggcctcaggcatccagt
gtattatttgccctgcacagtggtccttgaacagcatggtcacttcatga
gcatgagacatcctccttttccccatctcctctccgtatctcctccccct
gtgcctctgtcaggataatctgcatcctctgctctctccctgttgataag
gcacatcaaggaagtaatgctaactcacaggagggattttgagtaattaa
tgattcactgtgccattttaacacgcctatatcttatttcatttttattg
ctttcagtaaaacttggtggtggcacttaatgaattagtcatctattgtt
tggtgttttattatttacaaagtactgtcacatcaagtcttgaaaagatt
gtcaatattgtccctatttagatgagaataaggaacctagaaagacaaag
actgacatagccagcacagccaagttaaattttaaagaattaggtattga
atttgactgtgcccctgatcctgtctgtttcaattacccacaggaagtgg
aaaggtaaaaccctaaatcataaaataagagggctcaggaaagcatttca
gtgaaaaattcaggacatcagcagtttctctctctctctctccctccata
tctatctatctatctatctatctatctatctatctatctatctatctatc
tatctatctatcttaaatattattatatatatacatacatgtaatatata
catacatatacacatatatattacatgtatattacatgtgtgagtataca
tgcacgcgtgcgcgcgcgcacacacacacacacacacacacacacacaca
cacacacacacacacacgcacaaagatatgcaaagccagagcaaactgaa
ggaagctgtttccagcccagcatatttttcttctggatagaaactgaagc
cattttgtaaactttcctaaagacacattaaacagaagggagtagatgtt
gttttctagttttaagtcttgaattatgtattatcaagcaaaactggcaa
ctgtaatcaatagggcaatcagtgctatgtcagtttctcagacatctaat
ttagaaattctaataaagtaaatataatctgaacaaggatactcagagtt
tcaagttgagactatgtgaaaccttagagagcgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_84790211_84791005
seq2: B6Ng01-003P01.b_46_841 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  50

seq1  GATTGAATGCAG-AAGGTGATGGGAGATCTGGGAGAAGCTGAAGGAATGG  99
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GATTGAATGCAGAAAGGTGATGGGAGATCTGGGAGAAGCTGAAGGAATGG  100

seq1  AAAGATTATGATAAAATATATTTTAGAAAAGAATTTTTAAATAAAGTAAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTATGATAAAATATATTTTAGAAAAGAATTTTTAAATAAAGTAAT  150

seq1  CCAAAGAGAATAAACAAATGGCTTAGAGCAAGCTGTCTCATCATGGAGGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAGAATAAACAAATGGCTTAGAGCAAGCTGTCTCATCATGGAGGA  200

seq1  GTGTGAAATATATTATTGAGATATTGGTGAAATGAAGGAAGAATGATCTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAAATATATTATTGAGATATTGGTGAAATGAAGGAAGAATGATCTT  250

seq1  AAAATTAATAACCCAAGAAAAAATGGTTGACTTCAGGTAACTTTTCAAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAATAACCCAAGAAAAAATGGTTGACTTCAGGTAACTTTTCAAAT  300

seq1  CCTAAATTGATAAAACTCTTAAATCTATATAGAAAATAAATCCCCACTAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATTGATAAAACTCTTAAATCTATATAGAAAATAAATCCCCACTAG  350

seq1  AATCTTTTTCTTCCAAATAGAATTATATAGTGATACTTATAGATATTTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTTTCTTCCAAATAGAATTATATAGTGATACTTATAGATATTTTA  400

seq1  ATGTATTGTAAATACCTTGTCACCTGGGAAGTGGTGGTGCATGTCTTTAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTGTAAATACCTTGTCACCTGGGAAGTGGTGGTGCATGTCTTTAA  450

seq1  TCTCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAACACCAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAACACCAG  500

seq1  CCTGGTTTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACC  550

seq1  CTGTCTCGATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCGATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT  600

seq1  AAATACCTTATCAGAAATTATTAATTCTTTGGACTGTAAAATGACAGTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCTTATCAGAAATTATTAATTCTTTGGACTGTAAAATGACAGTTT  650

seq1  GTCATATTAATAAGACAAAAAGCAAACAAAACAAAACAAAACAAAACCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATTAATAAGACAAAAAGCAAACAAAACAAAACAAAACAAAACCCT  700

seq1  ATATACAGGACAATTGGTTTTGTCATTATAAATCTTGGGGAAATCCTTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACAGGACAATTGGTTTTGTCATTATAAATCTTGGGGAAATCCTTCA  750

seq1  CATTGATATCATTTTAGAGCTAAAAACAATCAAGTACCATGAATTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATATCATTTTAGAGCTAAAAACAATCAAGTACCATGAATTC  796

seq1: chr7_84684127_84685352
seq2: B6Ng01-003P01.g_68_1303

seq1  GAATTCAATCTTATTTTGAAGCAGAGGAGTGTGAAGTTATTACACCATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCTTATTTTGAAGCAGAGGAGTGTGAAGTTATTACACCATGA  50

seq1  TCCTGACATCAGTTTTGATCGATGGATCAATTAGGCCTCAGGCATCCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACATCAGTTTTGATCGATGGATCAATTAGGCCTCAGGCATCCAGT  100

seq1  GTATTATTTGCCCTGCACAGTGGTCCTTGAACAGCATGGTCACTTCATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATTTGCCCTGCACAGTGGTCCTTGAACAGCATGGTCACTTCATGA  150

seq1  GCATGAGACATCCTCCTTTTCCCCATCTCCTCTCCGTATCTCCTCCCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAGACATCCTCCTTTTCCCCATCTCCTCTCCGTATCTCCTCCCCCT  200

seq1  GTGCCTCTGTCAGGATAATCTGCATCCTCTGCTCTCTCCCTGTTGATAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCTGTCAGGATAATCTGCATCCTCTGCTCTCTCCCTGTTGATAAG  250

seq1  GCACATCAAGGAAGTAATGCTAACTCACAGGAGGGATTTTGAGTAATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATCAAGGAAGTAATGCTAACTCACAGGAGGGATTTTGAGTAATTAA  300

seq1  TGATTCACTGTGCCATTTTAACACGCCTATATCTTATTTCATTTTTATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCACTGTGCCATTTTAACACGCCTATATCTTATTTCATTTTTATTG  350

seq1  CTTTCAGTAAAACTTGGTGGTGGCACTTAATGAATTAGTCATCTATTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGTAAAACTTGGTGGTGGCACTTAATGAATTAGTCATCTATTGTT  400

seq1  TGGTGTTTTATTATTTACAAAGTACTGTCACATCAAGTCTTGAAAAGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTTTATTATTTACAAAGTACTGTCACATCAAGTCTTGAAAAGATT  450

seq1  GTCAATATTGTCCCTATTTAGATGAGAATAAGGAACCTAGAAAGACAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATATTGTCCCTATTTAGATGAGAATAAGGAACCTAGAAAGACAAAG  500

seq1  ACTGACATAGCCAGCACAGCCAAGTTAAATTTTAAAGAATTAGGTATTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACATAGCCAGCACAGCCAAGTTAAATTTTAAAGAATTAGGTATTGA  550

seq1  ATTTGACTGTGCCCCTGATCCTGTCTGTTTCAATTACCCACAGGAAGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACTGTGCCCCTGATCCTGTCTGTTTCAATTACCCACAGGAAGTGG  600

seq1  AAAGGTAAAACCCTAAATCATAAAATAAGAGGGCTCAGGAAAGCATTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTAAAACCCTAAATCATAAAATAAGAGGGCTCAGGAAAGCATTTCA  650

seq1  GTGAAAAATTCAGGACATCAGCAGTTTCTCTCTCTCTCTCTCCCTCCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAATTCAGGACATCAGCAGTTTCTCTCTCTCTCTCTCCCTCCATA  700

seq1  TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC  750

seq1  TATCTATCTATCTTAAATATTATTATATATATACATACATGTAATATATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCTATCTTAAATATTATTATATATATACATACATGTAATATATA  800

seq1  CATACATATACACATATATATTACATGTATATTACATGTGTGAGTATACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATATACACATATATATTACATGTATATTACATGTGTGAGTATACA  850

seq1  TGCACGCGTGCGCGCGCGCACACACACACACACACACACACACACACACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGCGTGCGCGCGCGCACACACACACACACACACACACACACACACA  900

seq1  CACACACACACACACACGCACAAAGATATGCAAAGCCAGAGCAAACTGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACGCACAAAGATATGCAAAGCCAGAGCAAACTGAA  950

seq1  GGAAGCTGTTTCCAGCCCAGCATATTTTTCTTCTGGATAGAAACTGAAGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTGTTTCCAGCCCAGCATATTTTTCTTCTGGATAGAAACTGAAGC  1000

seq1  CATTTTGTAAAC-TTCCTAAAGACACATTAAACAG-AGGGAGTAGATG-T  1047
      |||||||||||| |||||||||||||||||||||| |||||||||||| |
seq2  CATTTTGTAAACTTTCCTAAAGACACATTAAACAGAAGGGAGTAGATGTT  1050

seq1  GTTTTCTAGTTTTAAGTCTTGATTTATGTATTATC-AGCAAATACTGGC-  1095
      |||||||||||||||||||||| |||||||||||| |||||| |||||| 
seq2  GTTTTCTAGTTTTAAGTCTTGAATTATGTATTATCAAGCAAA-ACTGGCA  1099

seq1  ACTGTATCCAATAGGGC-ATCAGTGCTATG-CAG-TTCTCAG-CATCCTT  1141
      ||||||  ||||||||| |||||||||||| ||| ||||||| ||||  |
seq2  ACTGTAATCAATAGGGCAATCAGTGCTATGTCAGTTTCTCAGACATC--T  1147

seq1  AATTAAG--ATTCTAAT-AAGTAATAATAATACTAAAACACAAAG-TACT  1187
      |||| ||  |||||||| ||||||  ||||| || |   |||| | ||||
seq2  AATTTAGAAATTCTAATAAAGTAAATATAAT-CTGA---ACAAGGATACT  1193

seq1  CAGAGTTCTCA---TGTGACTATGTGAAAACCTTAGA---CGGGT  1226
      ||||||| |||   || ||||||||| ||||||||||   |||||
seq2  CAGAGTT-TCAAGTTGAGACTATGTG-AAACCTTAGAGAGCGGGT  1236