BAC Information

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BAC

Clone NameB6Ng01-004L12
Chromosome7 (Build37)
Map Location 62,279,036 - 62,422,879
singlet/doubletdoublet
Overlap geneLuzp2
Upstream geneMrps33p, LOC622146
Downstream geneLOC668796, Siglech, Tubgcp5, Cyfip1, Nipa2, Nipa1, LOC672959, Herc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004L12.bB6Ng01-004L12.g
ACCDH842054DH842055
length1,1201,194
definitionDH842054|Mus musculus domesticus DNA, BAC clone: B6Ng01-004L12, 5' end.DH842055|Mus musculus domesticus DNA, BAC clone: B6Ng01-004L12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,279,036 - 62,280,179)(62,421,665 - 62,422,879)
sequence
gaattctacaacaggtttttttttcctgatttttagaaactataaagata
tctgtaacaaggaatatttcccgactctgcaagaatcctaagaccctggc
ctgagggagaccagtatgagaaatcaattctcttagctttggaatcacag
attttcttcaacagaattacagtgtttgaagttgctaagactccatttct
gtagtgcttagataatcattttgctataacttaataactgcgttcattgt
taattattaatggctattaattaaaattctggagacttgcactttcttga
aaacaggaagtttttgccaaatcttcatggtcaaaggacttttaaaacac
attctttgaaatatcctttaaaaacaaagaacctcacttcccaattctag
attttgcttttaatctgctttaaataaattatgttctatgaagcttactt
atgttgtgggctttttaactacacggattccattccaagtcactatatga
gtcctaaaagggatgtttgttgggtcattttggatttttgcaacattagt
aaaagtttaaaactatataacattgttcatgatttcaatttatttcctct
ctcatctacttcaaaatatcttcacatgatatgtgtttctacaagtttaa
tattctttttcatctatcacaaaggagaagtagaatgggagctaacattc
agaataggcttcataaactctgcaagcatgttttaggttccattatgcta
tctcatgccaaacaaaaaacctttgggcatcggggctacccgatgccatg
atctaaggtacaaggttgtttcaatctgaaatttatcatattctgtaagt
ccttacacttccatccagttgtagaagagaggcatgacttgaaatgtaaa
ggagcataaattagaaaatgtagacttatttaattaagtaggtggtaggt
tgaaaatcccacagtcacccatccatgcagatctgttcagaaaaacatag
cccagcagtgcaaactgtcatgcacgaagtttccactgcagtagatcatc
tgaatcattccatggaacttacaagataaggataatagcttggaaatcag
gtagaataaacattggagga
gaattcactaggcatctagtaattttctactgggggacactcaatccata
caattgagagaggaattagaaaatcatcttaggaactttcattgaatgca
cttttagtttctcatttgtgcaatgtaaattactttctattcagagtttt
catttgtgctagagaaaaagctattagctctttagattatgtgagattta
atttaatattaagtcattaaacttatgaaaataacatatgtactcacctc
ttctgcatgaatcccacacagcttgcttcctgacaataatttgtttttca
aacttttattctgaggaaaagaaagagaattttatacaaaaagtggtcag
ttattaagaactctcttaatgaattatgccatataattctatgtttggct
cataaattaaagctatatgttatctaaagaattataggagtgtattattc
attctaaaaccaattttcaattaaaaattaatgaattgatattaggatag
tcactcaaagcaataaaactttggctaatgatatggccaaggtcaaggta
cttgccacccattgtgatgacttaagattgttaacaagacccacatgatg
gaaggagaaaactgactcccgaaagtggtcttctgatctccacaggcata
ccatgacacatgtacacaggcacatgcctgtgtttatgcatgcatgcaca
cacatgcatggacacacgcacgcacatacacactcagtgggtatacataa
aatgtaaacaaatcaaaacaaaacctttccctttatttattcttctttat
ttttacatgtagttttataaaataatctctgctttacgtgggcactccac
cgtatcgtatcttctgcaaccatctctcacatcacatctgcacaagggac
aacttgttctctattataataaagccccatcctcaacagagtatctgcat
cacccatgagagaccagtttaggatcttatacttatgcatgggcttcata
tataaagttcttcatgtttaaagctagtctgatcagaccccagcatgatt
aatctgtagttctgattcagacccagcagtgattaatctgtaacctcata
aatcttcaacatggcggacactgtagataagtattgttctctgaatcttc
ctgggtcctatagagaaaaagatggtatgtcactggttgtatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_62279036_62280179
seq2: B6Ng01-004L12.b_48_1167

seq1  GAATTCTACAACAGGTTTTTTTTTCCTGATTTTTAGAAACTATAAAGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAACAGGTTTTTTTTTCCTGATTTTTAGAAACTATAAAGATA  50

seq1  TCTGTAACAAGGAATATTTCCCGACTCTGCAAGAATCCTAAGACCCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAACAAGGAATATTTCCCGACTCTGCAAGAATCCTAAGACCCTGGC  100

seq1  CTGAGGGAGACCAGTATGAGAAATCAATTCTCTTAGCTTTGGAATCACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGAGACCAGTATGAGAAATCAATTCTCTTAGCTTTGGAATCACAG  150

seq1  ATTTTCTTCAACAGAATTACAGTGTTTGAAGTTGCTAAGACTCCATTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTCAACAGAATTACAGTGTTTGAAGTTGCTAAGACTCCATTTCT  200

seq1  GTAGTGCTTAGATAATCATTTTGCTATAACTTAATAACTGCGTTCATTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGCTTAGATAATCATTTTGCTATAACTTAATAACTGCGTTCATTGT  250

seq1  TAATTATTAATGGCTATTAATTAAAATTCTGGAGACTTGCACTTTCTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATTAATGGCTATTAATTAAAATTCTGGAGACTTGCACTTTCTTGA  300

seq1  AAACAGGAAGTTTTTGCCAAATCTTCATGGTCAAAGGACTTTTAAAACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGAAGTTTTTGCCAAATCTTCATGGTCAAAGGACTTTTAAAACAC  350

seq1  ATTCTTTGAAATATCCTTTAAAAACAAAGAACCTCACTTCCCAATTCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTGAAATATCCTTTAAAAACAAAGAACCTCACTTCCCAATTCTAG  400

seq1  ATTTTGCTTTTAATCTGCTTTAAATAAATTATGTTCTATGAAGCTTACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCTTTTAATCTGCTTTAAATAAATTATGTTCTATGAAGCTTACTT  450

seq1  ATGTTGTGGGCTTTTTAACTACACGGATTCCATTCCAAGTCACTATATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTGGGCTTTTTAACTACACGGATTCCATTCCAAGTCACTATATGA  500

seq1  GTCCTAAAAGGGATGTTTGTTGGGTCATTTTGGATTTTTGCAACATTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAAAAGGGATGTTTGTTGGGTCATTTTGGATTTTTGCAACATTAGT  550

seq1  AAAAGTTTAAAACTATATAACATTGTTCATGATTTCAATTTATTTCCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTAAAACTATATAACATTGTTCATGATTTCAATTTATTTCCTCT  600

seq1  CTCATCTACTTCAAAATATCTTCACATGATATGTGTTTCTACAAGTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTACTTCAAAATATCTTCACATGATATGTGTTTCTACAAGTTTAA  650

seq1  TATTCTTTTTCATCTATCACAAAGGAGAAGTAGAATGGGAGCTAACATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTTTCATCTATCACAAAGGAGAAGTAGAATGGGAGCTAACATTC  700

seq1  AGAATAGGCTTCATAAACTCTGCAAGCATGTTTTAGGTTCCATTATGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGGCTTCATAAACTCTGCAAGCATGTTTTAGGTTCCATTATGCTA  750

seq1  TCTCATGCCAAACAAAAAACCTTTGGGCATCGGGGCTACCCGATGCCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGCCAAACAAAAAACCTTTGGGCATCGGGGCTACCCGATGCCATG  800

seq1  ATCTAAGGTACAAGGTTGTTTCAATCTGAAATTTATCATATTCTGTAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGGTACAAGGTTGTTTCAATCTGAAATTTATCATATTCTGTAAGT  850

seq1  CCTTACACTTCCATCCAGTTGTAGAAGAGAGGCATGACTTGAAATGTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACACTTCCATCCAGTTGTAGAAGAGAGGCATGACTTGAAATGTAAA  900

seq1  GGAGCATAAATTAGAAAATGTAGACTTATTTAATTAAGTAGGTGGTAGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATAAATTAGAAAATGTAGACTTATTTAATTAAGTAGGTGGTAGGT  950

seq1  TGAAAAATCCCACAGTCACCCATCCATGCAGGATTCTGTTCAGGAAAAAC  1000
      || ||||||||||||||||||||||||||||   |||||||| |||||||
seq2  TG-AAAATCCCACAGTCACCCATCCATGCAG--ATCTGTTCA-GAAAAAC  996

seq1  ATAGCCCAGCAGTTGCAAACTTGTCATGCACGGAAGTTTCCACTGCAGTT  1050
      |||||||||||| ||||||| |||||||||| |||||||||||||||| |
seq2  ATAGCCCAGCAG-TGCAAAC-TGTCATGCAC-GAAGTTTCCACTGCAG-T  1042

seq1  AGAATCATCTTGAATCATTTCCCATTGGAACTTACAAGATACAGAATTTA  1100
      || |||||| |||||||||  ||| ||||||||||||||||  ||   ||
seq2  AG-ATCATC-TGAATCATT--CCA-TGGAACTTACAAGATAAGGA---TA  1084

seq1  TTATGTTTTTGTATATTTAAAGGTAGAAATAAAACATTGGAGGA  1144
       ||     ||| | ||    ||||||||   |||||||||||||
seq2  ATA---GCTTGGAAAT---CAGGTAGAA--TAAACATTGGAGGA  1120

seq1: chr7_62421665_62422879
seq2: B6Ng01-004L12.g_67_1260 (reverse)

seq1  ACATCACAACCAGTGACATACAATTCTGGTTGTTCTC-ATATGA-CCAGG  48
      |||| |||||||||||||||| ||     || ||||| ||| || |||||
seq2  ACAT-ACAACCAGTGACATACCAT----CTTTTTCTCTATAGGACCCAGG  45

seq1  AAGAGTCAGAGAAACAAATACTTATCTAACAGTGTCTGCCAATGTTTGAA  98
      |||| ||||||||   ||||||||||| |||||||| ||| ||| |||||
seq2  AAGATTCAGAGAA--CAATACTTATCT-ACAGTGTCCGCC-ATG-TTGAA  90

seq1  GATTTATGAGGTTAACAGATTAATCACTGCTGGGGTCTGGAATCAGAACT  148
      ||||||||||||| ||||||||||||||||| |||||| |||||||||||
seq2  GATTTATGAGGTT-ACAGATTAATCACTGCT-GGGTCT-GAATCAGAACT  137

seq1  ACAGATTAATCATTGCTGGGGTCTGGAATCAGAACTAGCTTTTAAACATG  198
      |||||||||||| ||||||||||||  ||||| |||||| ||||||||||
seq2  ACAGATTAATCA-TGCTGGGGTCTG--ATCAG-ACTAGC-TTTAAACATG  182

seq1  AAGAAACTTTATATATGAAGCCCATGCATAAGTTATAAGATCCTAAAACT  248
      ||| |||||||||||||||||||||||||||| ||||||||||| |||||
seq2  AAG-AACTTTATATATGAAGCCCATGCATAAG-TATAAGATCCT-AAACT  229

seq1  GGTCTTCTTCATGGGTGATGCAGATACTCTGTTGAGGATGGGGCTTTATT  298
      |||||   ||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCT--CTCATGGGTGATGCAGATACTCTGTTGAGGATGGGGCTTTATT  277

seq1  ATAATAGAGAACAAGTTGTCCCTTGTGCAGATGTGATGTGAGAGATGGTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGAGAACAAGTTGTCCCTTGTGCAGATGTGATGTGAGAGATGGTT  327

seq1  GCAGAAGATACGATACGGTGGAGTGCCCACGTAAAGCAGAGATTATTTTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGATACGATACGGTGGAGTGCCCACGTAAAGCAGAGATTATTTTA  377

seq1  TAAAACTACATGTAAAAATAAAGAAGAATAAATAAAGGGAAAGGTTTTGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTACATGTAAAAATAAAGAAGAATAAATAAAGGGAAAGGTTTTGT  427

seq1  TTTGATTTGTTTACATTTTATGTATACCCACTGAGTGTGTATGTGCGTGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTTGTTTACATTTTATGTATACCCACTGAGTGTGTATGTGCGTGC  477

seq1  GTGTGTCCATGCATGTGTGTGCATGCATGCATAAACACAGGCATGTGCCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCCATGCATGTGTGTGCATGCATGCATAAACACAGGCATGTGCCT  527

seq1  GTGTACATGTGTCATGGTATGCCTGTGGAGATCAGAAGACCACTTTCGGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACATGTGTCATGGTATGCCTGTGGAGATCAGAAGACCACTTTCGGG  577

seq1  AGTCAGTTTTCTCCTTCCATCATGTGGGTCTTGTTAACAATCTTAAGTCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTTTTCTCCTTCCATCATGTGGGTCTTGTTAACAATCTTAAGTCA  627

seq1  TCACAATGGGTGGCAAGTACCTTGACCTTGGCCATATCATTAGCCAAAGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATGGGTGGCAAGTACCTTGACCTTGGCCATATCATTAGCCAAAGT  677

seq1  TTTATTGCTTTGAGTGACTATCCTAATATCAATTCATTAATTTTTAATTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGCTTTGAGTGACTATCCTAATATCAATTCATTAATTTTTAATTG  727

seq1  AAAATTGGTTTTAGAATGAATAATACACTCCTATAATTCTTTAGATAACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGGTTTTAGAATGAATAATACACTCCTATAATTCTTTAGATAACA  777

seq1  TATAGCTTTAATTTATGAGCCAAACATAGAATTATATGGCATAATTCATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCTTTAATTTATGAGCCAAACATAGAATTATATGGCATAATTCATT  827

seq1  AAGAGAGTTCTTAATAACTGACCACTTTTTGTATAAAATTCTCTTTCTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGTTCTTAATAACTGACCACTTTTTGTATAAAATTCTCTTTCTTT  877

seq1  TCCTCAGAATAAAAGTTTGAAAAACAAATTATTGTCAGGAAGCAAGCTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGAATAAAAGTTTGAAAAACAAATTATTGTCAGGAAGCAAGCTGT  927

seq1  GTGGGATTCATGCAGAAGAGGTGAGTACATATGTTATTTTCATAAGTTTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGATTCATGCAGAAGAGGTGAGTACATATGTTATTTTCATAAGTTTA  977

seq1  ATGACTTAATATTAAATTAAATCTCACATAATCTAAAGAGCTAATAGCTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTAATATTAAATTAAATCTCACATAATCTAAAGAGCTAATAGCTT  1027

seq1  TTTCTCTAGCACAAATGAAAACTCTGAATAGAAAGTAATTTACATTGCAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTAGCACAAATGAAAACTCTGAATAGAAAGTAATTTACATTGCAC  1077

seq1  AAATGAGAAACTAAAAGTGCATTCAATGAAAGTTCCTAAGATGATTTTCT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGAAACTAAAAGTGCATTCAATGAAAGTTCCTAAGATGATTTTCT  1127

seq1  AATTCCTCTCTCAATTGTATGGATTGAGTGTCCCCCAGTAGAAAATTACT  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTCTCTCAATTGTATGGATTGAGTGTCCCCCAGTAGAAAATTACT  1177

seq1  AGATGCCTAGTGAATTC  1215
      |||||||||||||||||
seq2  AGATGCCTAGTGAATTC  1194