BAC Information

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BAC

Clone NameB6Ng01-004M20
Chromosome7 (Build37)
Map Location 71,994,742 - 71,995,645
singlet/doubletsinglet
Overlap genenone
Upstream geneKlf13, E030018B13Rik, Trpm1, BB128963, Mtmr15, LOC100041582, Mphosph10, Mcee, Apba2, 5730507A09Rik
Downstream geneNdnl2, Tjp1, Gm1693, EG665234, Tarsl2, Tm2d3, LOC665241
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004M20.g
ACCDH842114
length947
definitionDH842114|Mus musculus domesticus DNA, BAC clone: B6Ng01-004M20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctcccaccccacctccacacagaaatgaatgagatttggaactt
actcctgatttcatcttcaaaaacaaggttcacgtaacacctttgccaac
actgtggctgcccatccccaggaaaggctttgtgcattatcaaaaatgcc
gcaaaccaatccggatggaaagtggagtatcaatcattacatgattttcc
ctgccttaataaacagtaagatttacatttgcttgacttttatattttat
gtttatatgacagtgttatttatttctctattctgctggcgcttttacgg
gtaatatgtacttaatgggtcaagaagtgtaaacttgattatatctgata
tcctggttctttttctctaatgaatgttattaaaaagttgatgtttgtca
catcgttctttgtgcgatgagattttatgttgtatccatttcctgtccat
ctgcttccccgtctgactccccagatctatggtttgcctagaaaagcttc
ccaactttaggtttatgaacagtcttcggggttctctaaattttagagac
ttttttcttaaatgttggtaaatgttgcatttttggtttttaaatattta
tttactttgtgtggatgtacgtgggcctgtttgtatgtctgtatattgtg
tgtatgtaggagctcacagaggcctcctagaactgggcttacagacagca
gtgagctgccatgtggatgctcgaatctaaccagggcttctgcaagagca
gccagtgctcttaatcacagagccatccctccatccgctaggtttattat
tgttattattacaccgttacagtgacaataaagtacaacacagtgggcag
caagtggggacatcatggtgagtggcatctgtaggagccgtttccagcaa
gaacactgacacttttcccaaaattcctccctagagcctcatatgat
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_71994742_71995645
seq2: B6Ng01-004M20.g_69_969 (reverse)

seq1  CTTGCTGGAAACGGCTCCTACAGGATGCCACTCACCATGATGTCCCCACT  50
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTTGCTGGAAACGGCTCCTACA-GATGCCACTCACCATGATGTCCCCACT  49

seq1  TGCTGCCCACCTGTG-TGTTCTTTATTGTCACTGTTAAGGTGTAATAATA  99
      ||||||||| ||||| ||| ||||||||||||||| | ||||||||||||
seq2  TGCTGCCCA-CTGTGTTGTACTTTATTGTCACTGTAACGGTGTAATAATA  98

seq1  ATAATAATAAACCTAGCGGATGGAGGGATGGCTCTGTGGTTAAGAGCACT  149
      | |||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACAATAATAAACCTAGCGGATGGAGGGATGGCTCTGTGATTAAGAGCACT  148

seq1  GGCTGCTCTTGCAGAAGACCTGGTTAGATTCCAGCATCCACATGGCAGCT  199
      ||||||||||||||||| ||||||||||||| ||||||||||||||||||
seq2  GGCTGCTCTTGCAGAAGCCCTGGTTAGATTCGAGCATCCACATGGCAGCT  198

seq1  CACTGCTGTCTGTAAGCCCAGTTCTAGGAGGCCTCTGTGAGCTCCTACAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTGTCTGTAAGCCCAGTTCTAGGAGGCCTCTGTGAGCTCCTACAT  248

seq1  ACACACAATATACAGACATACAAACAGGCCCACGTACATCCACACAAAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAATATACAGACATACAAACAGGCCCACGTACATCCACACAAAGT  298

seq1  AAATAAATATTTAAAAACCAAAAATGCAACATTTACCAACATTTAAGAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATATTTAAAAACCAAAAATGCAACATTTACCAACATTTAAGAAA  348

seq1  AAAGTCTCTAAAATTTAGAGAACCCAGAAGACTGTTCATAAACTTAAAGT  399
      ||||||||||||||||||||||||| ||||||||||||||||| ||||||
seq2  AAAGTCTCTAAAATTTAGAGAACCCCGAAGACTGTTCATAAACCTAAAGT  398

seq1  TGGGAAGCTTTTCTAGGCAAACCACAGATCTGGGGAGTCAGACGGGGATG  449
      |||||||||||||||||||||||| ||||||||||||||||||||||| |
seq2  TGGGAAGCTTTTCTAGGCAAACCATAGATCTGGGGAGTCAGACGGGGAAG  448

seq1  CAGATGGACAGGAACTGGATACAACATAAAATCTCACCGCAGAAAGAACA  499
      |||||||||||||| ||||||||||||||||||||| |||| ||||||| 
seq2  CAGATGGACAGGAAATGGATACAACATAAAATCTCATCGCACAAAGAACG  498

seq1  CTGTGACAAACATCAACTTTTAAATAACAAACATTAGAGAAAAAGAACCA  549
       |||||||||||||||||||| |||||||  |||||||||||||||||||
seq2  ATGTGACAAACATCAACTTTTTAATAACATTCATTAGAGAAAAAGAACCA  548

seq1  CTATAACAGATATAATAAAGTCTACACTTCTTGACACAGTAAGTACATAT  599
        ||| |||||||||| |||| ||||||||||||| || |||||||||||
seq2  GGATATCAGATATAATCAAGTTTACACTTCTTGACCCATTAAGTACATAT  598

seq1  TAACTGTAAAAGTGACAGCAGAATAGAAAAATAAATAACACTGGCAACTA  649
      || | ||||||| | |||||||||||| ||||||||||||||| ||  ||
seq2  TACCCGTAAAAGCGCCAGCAGAATAGAGAAATAAATAACACTGTCATATA  648

seq1  AACATAAAATATAAATGACAAACAAATGTAAATCTTACTTTTAATTAAGG  699
      ||||||||||||||| | ||| ||||||||||||||||| || |||||||
seq2  AACATAAAATATAAAAGTCAAGCAAATGTAAATCTTACTGTTTATTAAGG  698

seq1  CAGGGAAAATCATGTAATGATTGATACTCCACTTTCCTGCCGGATTCTTT  749
      |||||||||||||||||||||||||||||||||||||  |||||||  ||
seq2  CAGGGAAAATCATGTAATGATTGATACTCCACTTTCCATCCGGATTGGTT  748

seq1  CTGGACATTTTAGATAATGCACAAAGCATTGCCTGGGGATGGGCAGCCAC  799
         | |||||| ||||||||||||||| || |||||||||||||||||||
seq2  TGCGGCATTTTTGATAATGCACAAAGCCTTTCCTGGGGATGGGCAGCCAC  798

seq1  AGTGTTGGCAAAGGTGTTACGTGGTACCTTGTTTTTGAAGATGAACTAAG  849
      |||||||||||||||||||||| | |||||||||||||||||||| | ||
seq2  AGTGTTGGCAAAGGTGTTACGT-GAACCTTGTTTTTGAAGATGAAATCAG  847

seq1  GAGTAAGTTGATAAATCTTATTCATTTGTGTGTGGAGGTGGGGTGGGTGG  899
      |||||||||   |||||| |||||||| ||||||||||||||||||| ||
seq2  GAGTAAGTT-CCAAATCTCATTCATTTCTGTGTGGAGGTGGGGTGGGAGG  896

seq1  AATTC  904
      |||||
seq2  AATTC  901