BAC Information

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BAC

Clone NameB6Ng01-005D21
Chromosome7 (Build37)
Map Location 122,609,708 - 122,742,468
singlet/doubletdoublet
Overlap geneSox6
Upstream genePde3b, Cyp2r1, Calca, LOC100043295, Calcb, Insc, EG627967, LOC668472
Downstream geneLOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005D21.bB6Ng01-005D21.g
ACCDH842431DH842432
length731774
definitionDH842431|Mus musculus domesticus DNA, BAC clone: B6Ng01-005D21, 5' end.DH842432|Mus musculus domesticus DNA, BAC clone: B6Ng01-005D21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,609,708 - 122,610,406)(122,741,704 - 122,742,468)
sequence
gaattccctaagtctggaacatatattggagaaagaacaggatttcttga
tccctttctgctctgtaaaccacttaagctgacttctttcccatcacttg
tagccaataacgtataatctaaataaactgatatttaacttcaacagtat
ttttaaacatttacttattttatgtatatgagtacactgtcactgtcttc
aggcacaccagaagagggcttcggatcccattacagatagttgtgagcca
ccatgtggttgctggtaaatgaactcgggacctctggaagagcagccatt
gctcttaaccactgagccatctctctagcccaacttcaccaatattttat
gatttttatttcttttgttttagggtctcaggtgtctttaattctctgaa
cccaagcacttcacagatggccaatcagaaaattgactgcaatttacatg
tctgattggtcagatcttaatattgcagaagtcaatcaatcagtcagtca
gccctttaatcaatccttcagctgtgtcctagcaaatccctctcctttag
tcctgtccgccattaagggcgctgctggcacctgattgcctccgggtccc
attttaaacctccctcctagcagccctatttaaaagttcaccaaagttaa
atttccaccttccaagtttttgatggggcccggtttacctttttctggcc
tggtcattttcccccgggattttttttgttt
gaattcagaaaaaaaatactgtaaagtgtttattttttgcttgcccttta
ttaacccacatcttagggcattcccccgagaaagactgctggcaaatgga
acctctcagacccacacagaagcatttacacagtgtccctggctgtgaag
ggacagagacaggagaaagtaagctggtaccatttagacaggggcatcag
ctcatatatgggatttcatctaaagaaaagatttaggaatttagaggatg
catttggagtttgtagaactgctggaacacatttctatcttaatgtttag
ttaagtgtataatgtagtcattttgtgtcaccgaaagccttagatctgtc
taaaccaaaagactgtgccttttgacgcatctctgttctgatctttaaat
gaagaaagtcccgtggctccgcctatggactcaggccttaaaggccagga
caaagcttccctgctctgctctgctggaaccagggcagcttgctagagaa
aagaatggaggtaggaaattaaaatgtgattttcaggagcatgattctgt
catagctctgatttcctttatatagagcacaaatactgatgtagactgaa
tgtttttctctttttgcatttttgtggtcttttgatacgttttattgagg
tcaaaatgaaatctgatatagttgggatttattatgagttgcttcagtgg
atacgactccataattacttgagctacatggcagttgcataaagctgaca
agcaattttatttgttacagcgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_122609708_122610406
seq2: B6Ng01-005D21.b_44_774

seq1  GAATTCCCTAAGTCTGGAACATATATTGGAGAAAGAACAGGATTTCTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAAGTCTGGAACATATATTGGAGAAAGAACAGGATTTCTTGA  50

seq1  TCCCTTTCTGCTCTGTAAACCACTTAAGCTGACTTCTTTCCCATCACTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTCTGCTCTGTAAACCACTTAAGCTGACTTCTTTCCCATCACTTG  100

seq1  TAGCCAATAACGTATAATCTAAATAAACTGATATTTAACTTCAACAGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAATAACGTATAATCTAAATAAACTGATATTTAACTTCAACAGTAT  150

seq1  TTTTAAACATTTACTTATTTTATGTATATGAGTACACTGTCACTGTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAACATTTACTTATTTTATGTATATGAGTACACTGTCACTGTCTTC  200

seq1  AGGCACACCAGAAGAGGGCTTCGGATCCCATTACAGATAGTTGTGAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACACCAGAAGAGGGCTTCGGATCCCATTACAGATAGTTGTGAGCCA  250

seq1  CCATGTGGTTGCTGGTAAATGAACTCGGGACCTCTGGAAGAGCAGCCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGGTTGCTGGTAAATGAACTCGGGACCTCTGGAAGAGCAGCCATT  300

seq1  GCTCTTAACCACTGAGCCATCTCTCTAGCCCAACTTCACCAATATTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTAACCACTGAGCCATCTCTCTAGCCCAACTTCACCAATATTTTAT  350

seq1  GATTTTTATTTCTTTTGTTTTAGGGTCTCAGGTGTCTTTAATTCTCTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTATTTCTTTTGTTTTAGGGTCTCAGGTGTCTTTAATTCTCTGAA  400

seq1  CCCAAGCACTTCACAGATGGCCAATCAGAAAATTGACTGCAATTTACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCACTTCACAGATGGCCAATCAGAAAATTGACTGCAATTTACATG  450

seq1  TCTGATTGGTCAGATCTTAATATTGCAGAAGTCAATCAATCAGTCAGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTGGTCAGATCTTAATATTGCAGAAGTCAATCAATCAGTCAGTCA  500

seq1  G-CCATTAATCAAT-CTTCAGCTGTGT-CTAGCAAAT-CCTCT-CTTTAG  545
      | || ||||||||| |||||||||||| ||||||||| ||||| ||||||
seq2  GCCCTTTAATCAATCCTTCAGCTGTGTCCTAGCAAATCCCTCTCCTTTAG  550

seq1  T-CTGTCAG-CATTAA-GGCGCTGCT-GCA-CTGA-TGCCT-CGGGTCCC  588
      | ||||| | |||||| ||||||||| ||| |||| ||||| ||||||||
seq2  TCCTGTCCGCCATTAAGGGCGCTGCTGGCACCTGATTGCCTCCGGGTCCC  600

seq1  A-TTTAAAC--TCCTCCTAGCAG-CCTATT--AAAGTTCACC-AAGTTAA  631
      | |||||||   ||||||||||| ||||||  |||||||||| |||||||
seq2  ATTTTAAACCTCCCTCCTAGCAGCCCTATTTAAAAGTTCACCAAAGTTAA  650

seq1  --TTTCAGC-TCCAAG-TTTTGATGGG--CCGGTTTACC-TCTTCT-GCC  673
        || || | |||||| ||||||||||  |||||||||| | |||| |||
seq2  ATTTCCACCTTCCAAGTTTTTGATGGGGCCCGGTTTACCTTTTTCTGGCC  700

seq1  T-GTCATTT--CCCCGG--ATTTTCTTGTTT  699
      | |||||||  ||||||   |||| ||||||
seq2  TGGTCATTTTCCCCCGGGATTTTTTTTGTTT  731

seq1: chr7_122741704_122742468
seq2: B6Ng01-005D21.g_69_842 (reverse)

seq1  CTCGCTGTAACATAT-AAATTGCTTGTCAGCTTTATGC-ACTGCCATGTA  48
      |||||||||||| || |||||||||||||||||||||| |||||||||||
seq2  CTCGCTGTAACAAATAAAATTGCTTGTCAGCTTTATGCAACTGCCATGTA  50

seq1  GCTC-AGTAATTATGGAGTTGTATCCACTG-AGCAACTCATAATAAAT-C  95
      |||| |||||||||||||| |||||||||| ||||||||||||||||| |
seq2  GCTCAAGTAATTATGGAGTCGTATCCACTGAAGCAACTCATAATAAATCC  100

seq1  CTACTATATCAGATTTCA-TTTGACCTCAAT-AAACGTATC-AAAGACCA  142
      | |||||||||||||||| |||||||||||| ||||||||| ||||||||
seq2  CAACTATATCAGATTTCATTTTGACCTCAATAAAACGTATCAAAAGACCA  150

seq1  CAAAAATGC-AAAAGAGAAAAACATTCAGTCTACATCAGTATTTGTGCTC  191
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATGCAAAAAGAGAAAAACATTCAGTCTACATCAGTATTTGTGCTC  200

seq1  TATATAAAGGAAATCAGAGCTATGACAGAATCATGCTCCTGAAAATCACA  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAAGGAAATCAGAGCTATGACAGAATCATGCTCCTGAAAATCACA  250

seq1  TTTTAATTTCCTACCTCCCTTCTTTTCTCTAGCAAGCTGCCCTGGTTCCA  291
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTTAATTTCCTACCTCCATTCTTTTCTCTAGCAAGCTGCCCTGGTTCCA  300

seq1  GCAGAGCAGAGCAGGGAAGCTTTGTCCTGGCCTTTAAGGCCTGAGTCCAT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCAGAGCAGGGAAGCTTTGTCCTGGCCTTTAAGGCCTGAGTCCAT  350

seq1  AGGCGGAGCCACGGGACTTTCTTCATTTAAAGATCAGAACAGAGATGCGT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGAGCCACGGGACTTTCTTCATTTAAAGATCAGAACAGAGATGCGT  400

seq1  CAAAAGGCACAGTCTTTTGGTTTAGACAGATCTAAGGCTTTCGGTGACAC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGCACAGTCTTTTGGTTTAGACAGATCTAAGGCTTTCGGTGACAC  450

seq1  AAAATGACTACATTATACACTTAACTAAACATTAAGATAGAAATGTGTTC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGACTACATTATACACTTAACTAAACATTAAGATAGAAATGTGTTC  500

seq1  CAGCAGTTCTACAAACTCCAAATGCATCCTCTAAATTCCTAAATCTTTTC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTTCTACAAACTCCAAATGCATCCTCTAAATTCCTAAATCTTTTC  550

seq1  TTTAGATGAAATCCCATATATGAGCTGATGCCCCTGTCTAAATGGTACCA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATGAAATCCCATATATGAGCTGATGCCCCTGTCTAAATGGTACCA  600

seq1  GCTTACTTTCTCCTGTCTCTGTCCCTTCACAGCCAGGGACACTGTGTAAA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACTTTCTCCTGTCTCTGTCCCTTCACAGCCAGGGACACTGTGTAAA  650

seq1  TGCTTCTGTGTGGGTCTGAGAGGTTCCATTTGCCAGCAGTCTTTCTCGGG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTGTGTGGGTCTGAGAGGTTCCATTTGCCAGCAGTCTTTCTCGGG  700

seq1  GGAATGCCCTAAGATGTGGGTTAATAAAGGGCAAGCAAAAAATAAACACT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGCCCTAAGATGTGGGTTAATAAAGGGCAAGCAAAAAATAAACACT  750

seq1  TTACAGTATTTTTTTTCTGAATTC  765
      ||||||||||||||||||||||||
seq2  TTACAGTATTTTTTTTCTGAATTC  774