BAC Information

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BAC

Clone NameB6Ng01-005F02
Chromosome7 (Build37)
Map Location 12,151,903 - 12,153,038
singlet/doubletsinglet
Overlap geneLOC665926
Upstream geneV1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386
Downstream geneLOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005F02.bB6Ng01-005F02.g
ACCDH842484DH842485
length1,110809
definitionDH842484|Mus musculus domesticus DNA, BAC clone: B6Ng01-005F02, 5' end.DH842485|Mus musculus domesticus DNA, BAC clone: B6Ng01-005F02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatgatcctgggcccactgtcccacttctctggcagtgaaatga
gttccttggtcagaagcaatactgtgtggaataccatgacgatagattca
gtagtagctgtgaatgaaagtccaaggatctagcagttactcagcctcac
acagcaagcaggctaaggaataagagcaagactcccttcttccaatgtcc
ttatattgtctccaacagaaggtatagcccagattaaaggcgtgttccac
cacacctttaatcccagatgaccttgaagtcagagatttaatcttctgga
attcatagccactatgcctcaagatctccataccaagatgcagatcagaa
acttctatctccaagcctctagataatggtcactggtgggccttccaatt
ctggattgtagttcattccaaatatagtcaagttgacaaccaggaatagc
cactacaggtggggacactttaaagatcagcacaccactaccccacagac
tgcaaagaattctcactgccaatggcttggccaagctaacccaaccccca
aaaagcaaaacaaaaaaaaaaatcaaataatgtaaaattttaaaagtttt
tttttcatataatctattcaagatttctctagcactgactgatacaaagc
acaatgagatggcactttagagacctcagctttaggaaagggagatgaga
tgatgttcatgtggctaaatcagtgacacaaacacaattttccttttctc
tgtctaccgtgggggcaggtgaactataagaggtcagcacaacactaagg
ggcggtatgatccatctttgagcagttaggaaagggatagagctgcgaca
agtttggtttcaggctgggtgcttaaatggtagcacgtttgcctaacatt
catgaggccatggggaggtggggcttctcagatttcttcactgttctttt
tttggtcacattctggatgggaaaagtacaaaattaaaaataagggttaa
agttgttcaaagaaacaagctgaaaaccttcacagtcctggacagttttt
tgtttgctgacttcctagatctcctgttgtctgctagacttgtgcagagt
cctgagctct
gaattccttacagaatgaaataaaatttttactacaataggatggcccgt
tatctgtcttaataagtttaggcaatcccatgggattaaaggcttgctgg
caatgatcaattacgtttttagaagcctctcctgtatgcagagaagggat
ctggacggtgtattgaagttaaatgtaccacaggtctcaaataagggtac
tgaatgtgtaacatataaattgtcagtaaagatattaaaagcctcatgta
cagactgaaagacctgtagtactgttgttaatttggctaactgagctgaa
aggccaggagtctctaagataacttgttgattattaataagatatccagc
ttgccctttagaggagccatcagtaaaaatcaatagagcattatataaag
gctgtaaagaagtcattttaggaaatatcacatcacgtacatttaaaaat
tttataaacctatcttggggatagtggatgtctatagttcccttaaaagg
ttgaacaatgatatctggctctttgccaaaataagttaatgtctgccttc
ttccagtgataatcatctgtgccactgctttgtgatatggcaagatatta
catttaggagaaatccttgagtgtatccaccttataggaaaattttgcta
tagcggttccataggcacatgagtcgtattaaaaattaacagatgcaggg
gcaaggagtaatctatataagtgacaaattgctcttcaatagctttttcc
actagctgtaaggccagcaacccttctgaggttagggatctaggggaagt
ggggggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_12151903_12153038
seq2: B6Ng01-005F02.b_45_1154 (reverse)

seq1  AGAGCTCAGGCAGGCTCCTCTGTGGGAGAGCTCAGTGCTCTGCACCAAGT  50
                                |||||||||  ||||||| |||||
seq2  --------------------------AGAGCTCAGGACTCTGCA-CAAGT  23

seq1  CTTAGCCAGACAACAGGGAGATTCTAGGAAGTCAGCCAAAAACAAAAAAC  100
      | ||| ||||||||| ||||| ||||||||||||||   |||||||||||
seq2  C-TAG-CAGACAACA-GGAGA-TCTAGGAAGTCAGC---AAACAAAAAAC  66

seq1  TGTTCCGGGCTGTGAAGGTTTTCAGCTTTGGTTTCTTTGAACAACTTT-A  149
      ||| | || |||||||||||||||||||  |||||||||||||||||| |
seq2  TGTCCAGGACTGTGAAGGTTTTCAGCTT--GTTTCTTTGAACAACTTTAA  114

seq1  CCCTTATTTTT-ATTTTGTACTTTTTCCAT-CAG-ATGTGACCAAATAA-  195
      ||||||||||| ||||||||||||| |||| ||| ||||||||||| || 
seq2  CCCTTATTTTTAATTTTGTACTTTTCCCATCCAGAATGTGACCAAAAAAA  164

seq1  -GACAGTG-AGAAATCTGAGAAGCCCCACCT-CCCATGGCCTCATGAATG  242
        |||||| |||||||||||||||||||||| ||||||||||||||||||
seq2  GAACAGTGAAGAAATCTGAGAAGCCCCACCTCCCCATGGCCTCATGAATG  214

seq1  TTAGGCAAACGTGCTACCATTT-AGCACCAGCCCTGAGACCAAACTTGTC  291
      |||||||||||||||||||||| ||||||   ||||| ||||||||||||
seq2  TTAGGCAAACGTGCTACCATTTAAGCACCCAGCCTGAAACCAAACTTGTC  264

seq1  GCAGCTCTATCCCTTTCCTAACTGCTCAAAGATGGATCATACCGCCCCTT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTCTATCCCTTTCCTAACTGCTCAAAGATGGATCATACCGCCCCTT  314

seq1  AGTGTTGTGCTGACCTCTTATAGTTCACCTGCCCCCACGGTAGACAG-GG  390
      ||||||||||||||||||||||||||||||||||||||||||||||| | 
seq2  AGTGTTGTGCTGACCTCTTATAGTTCACCTGCCCCCACGGTAGACAGAGA  364

seq1  AAAGGAAAATTGTGTTTGTGTCACTGATTTAGCCACATGAACATCATCTC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAATTGTGTTTGTGTCACTGATTTAGCCACATGAACATCATCTC  414

seq1  ATCTCCCTTTCCTAAAGCTGAGGTCTCTAAAGTGCCATCTCATTGTGCTT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCTTTCCTAAAGCTGAGGTCTCTAAAGTGCCATCTCATTGTGCTT  464

seq1  TGTATCAGTCAGTGCTAGAGAAATCTTGAATAGATTATATGAAAAAAAAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCAGTCAGTGCTAGAGAAATCTTGAATAGATTATATGAAAAAAAAA  514

seq1  CTTTTAAAATTTTACATTATTTGATTTTTTTTTTTGTTTTGCTTTTTGGG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAAATTTTACATTATTTGATTTTTTTTTTTGTTTTGCTTTTTGGG  564

seq1  GGTTGGGTTAGCTTGGCCAAGCCATTGGCAGTGAGAATTCTTTGCAGTCT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGGTTAGCTTGGCCAAGCCATTGGCAGTGAGAATTCTTTGCAGTCT  614

seq1  GTGGGGTAGTGGTGTGCTGATCTTTAAAGTGTCCCCACCTGTAGTGGCTA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGTAGTGGTGTGCTGATCTTTAAAGTGTCCCCACCTGTAGTGGCTA  664

seq1  TTCCTGGTTGTCAACTTGACTATATTTGGAATGAACTACAATCCAGAATT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGTTGTCAACTTGACTATATTTGGAATGAACTACAATCCAGAATT  714

seq1  GGAAGGCCCACCAGTGACCATTATCTAGAGGCTTGGAGATAGAAGTTTCT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCCCACCAGTGACCATTATCTAGAGGCTTGGAGATAGAAGTTTCT  764

seq1  GATCTGCATCTTGGTATGGAGATCTTGAGGCATAGTGGCTATGAATTCCA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCATCTTGGTATGGAGATCTTGAGGCATAGTGGCTATGAATTCCA  814

seq1  GAAGATTAAATCTCTGACTTCAAGGTCATCTGGGATTAAAGGTGTGGTGG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTAAATCTCTGACTTCAAGGTCATCTGGGATTAAAGGTGTGGTGG  864

seq1  AACACGCCTTTAATCTGGGCTATACCTTCTGTTGGAGACAATATAAGGAC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACGCCTTTAATCTGGGCTATACCTTCTGTTGGAGACAATATAAGGAC  914

seq1  ATTGGAAGAAGGGAGTCTTGCTCTTATTCCTTAGCCTGCTTGCTGTGTGA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAGAAGGGAGTCTTGCTCTTATTCCTTAGCCTGCTTGCTGTGTGA  964

seq1  GGCTGAGTAACTGCTAGATCCTTGGACTTTCATTCACAGCTACTACTGAA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGTAACTGCTAGATCCTTGGACTTTCATTCACAGCTACTACTGAA  1014

seq1  TCTATCGTCATGGTATTCCACACAGTATTGCTTCTGACCAAGGAACTCAT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCGTCATGGTATTCCACACAGTATTGCTTCTGACCAAGGAACTCAT  1064

seq1  TTCACTGCCAGAGAAGTGGGACAGTGGGCCCAGGATCATGGAATTC  1136
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGCCAGAGAAGTGGGACAGTGGGCCCAGGATCATGGAATTC  1110