BAC Information

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BAC

Clone NameB6Ng01-005I08
Chromosome7 (Build37)
Map Location 86,642,918 - 86,831,429
singlet/doubletdoublet
Overlap geneAI854517, Rhcg, 5730590G19Rik
Upstream geneNtrk3, Mrpl46, Mrps11, Det1, Isg20l1, Isg20, Acan, Hapln3, Mfge8, Abhd2, Rlbp1, BC025462, Polg
Downstream genePlin, Pex11a, EG626359, EG665900, Mesp1, Mesp2, Anpep, Ap3s2, 2610034B18Rik, Zfp710, Idh2, Sema4b, Cib1, D330012F22Rik, LOC100042374, LOC100042379, Ttll13, Ngrn, Vps33b, Prc1, Rccd1, Unc45a, Hddc3, Man2a2, Fes, Furin, LOC384647, Blm, Crtc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005I08.bB6Ng01-005I08.g
ACCDH842635DH842636
length548953
definitionDH842635|Mus musculus domesticus DNA, BAC clone: B6Ng01-005I08, 5' end.DH842636|Mus musculus domesticus DNA, BAC clone: B6Ng01-005I08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,642,918 - 86,643,471)(86,830,496 - 86,831,429)
sequence
aataggaagtgggggaggggaggagtggccgagcctgccagactgttaag
gagtggctgagaaagttaggggaatgctggggttccaaaacaagagatag
cctttacctcgggcaaggactccccccacccccaacactctttctagatc
aagtcttcgaggttagtgtgatcaaagaggccaagggaagatcgacttca
ccttagggactacctcagaagcctgtggatggagtgcgaggagaaagagt
tggggccttcaaggcttccccacgaagacctgcccccccccctctaagtc
actgtactatatcttaatctcccagggtctcctaggctgctctgtcgggt
ctctggatatgtcgccctttcggatccttttctggaagcttgtttctggg
ttgctgtctccatccagttctggaagtctgactcatcaccttcatcctgt
ctcctgcttttccgcttttctttcccctctttctcttcttgccttgttct
gcacagtcagcaatctggattcttctaataagaatctctttccaaaac
gaattcaatcacaggcctgagcaggcagaataatcaatgaatgtcaaaaa
aaaaaaaaaaaaaaaattaaaccgcctaaccacaaaaaagaaaaagaaaa
atgaagaaagactgaggcatgcttgtacactatagcagcatgcatgccac
cacatgcctcatgggaattctagaaggtgaaaagacaaagaggcagaaaa
cattgctgaagaaaaatggttgaaaacttccttaatcagaggaaagacat
gaacctaaccactcaagtttaatagacttcaagaaagatgaccccaaaga
gatccacaatgagacaccttattgtccacaccctgcccccaaacaaaacc
aataacaaaaactttaaaaaaaaagaaaaaagaaaaaccaacaagctaaa
acccaaagcaagtagcgggaaggaaagtgaggtcagaaagtcaatggaga
aaaggccaactttcttcaaatgatcaataaaattggccaacctttagcta
aaccagtcaagaaaaaccagaacgactcaattactaatgtgggaatagaa
gtgcgaacaatgtcaccagcagatttgttgttacaaacccttattttgta
gttaccctgaaatgtgctgcttttggtcttcttgaacttgtcctgtttat
ggtggagacattccaaagcagatacagaatggctgcgaggcagccccttc
tttagccccctctttgaaggagaaagcatttcctggttgaagaggtttct
tcgaacttttgttacttctaaaagcagagagagagaaaagagagatagga
gattaaaaaccttatgctggtgtcaactaactgagcatgccagacccaaa
cacagagctgcttaggaaagccactcttcagtcaggtttaaaattatcct
ttggctagcacactccttggggactcaaactactaacttacagatcaaag
ttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_86642918_86643471
seq2: B6Ng01-005I08.b_48_601

seq1  GAATTCAATAGGAAGTGGGGGAGGGGAGGAGTGGCCGAGCCTGCCAGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAGGAAGTGGGGGAGGGGAGGAGTGGCCGAGCCTGCCAGACT  50

seq1  GTTAAGGAGTGGCTGAGAAAGTTAGGGGAATGCTGGGGTTCCAAAACAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGGAGTGGCTGAGAAAGTTAGGGGAATGCTGGGGTTCCAAAACAAG  100

seq1  AGATAGCCTTTACCTCGGGCAAGGACTCCCCCCACCCCCAACACTCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGCCTTTACCTCGGGCAAGGACTCCCCCCACCCCCAACACTCTTTC  150

seq1  TAGATCAAGTCTTCGAGGTTAGTGTGATCAAAGAGGCCAAGGGAAGATCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCAAGTCTTCGAGGTTAGTGTGATCAAAGAGGCCAAGGGAAGATCG  200

seq1  ACTTCACCTTAGGGACTACCTCAGAAGCCTGTGGATGGAGTGCGAGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACCTTAGGGACTACCTCAGAAGCCTGTGGATGGAGTGCGAGGAGA  250

seq1  AAGAGTTGGGGCCTTCAAGGCTTCCCCACGAAGACCTGCCCCCCCCCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTGGGGCCTTCAAGGCTTCCCCACGAAGACCTGCCCCCCCCCCTC  300

seq1  TAAGTCACTGTACTATATCTTAATCTCCCAGGGTCTCCTAGGCTGCTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCACTGTACTATATCTTAATCTCCCAGGGTCTCCTAGGCTGCTCTG  350

seq1  TCGGGTCTCTGGATATGTCGCCCTTTCGGATCCTTTTCTGGAAGCTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGTCTCTGGATATGTCGCCCTTTCGGATCCTTTTCTGGAAGCTTGTT  400

seq1  TCTGGGTTGCTGTCTCCATCCAGTTCTGGAAGTCTGACTCATCACCTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTTGCTGTCTCCATCCAGTTCTGGAAGTCTGACTCATCACCTTCA  450

seq1  TCCTGTCTCCTGCTTTTCCGCTTTTCTTTCCCCTCTTTCTCTTCTTGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCTCCTGCTTTTCCGCTTTTCTTTCCCCTCTTTCTCTTCTTGCCT  500

seq1  TGTTCTGCACAGTCAGCAATCTGGATTCTTCTAATAAGAATCTCCCCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||   |||
seq2  TGTTCTGCACAGTCAGCAATCTGGATTCTTCTAATAAGAATCTCTTTCCA  550

seq1  AAAC  554
      ||||
seq2  AAAC  554

seq1: chr7_86830496_86831429
seq2: B6Ng01-005I08.g_68_996 (reverse)

seq1  TTTGAGGTCCCCCAGGAGTGTGCTAGCCAAAGGAATAATTTTAAAACCTG  50
      ||||| |||||| |||||||||||||||||||| |||||||| |||||||
seq2  TTTGA-GTCCCCAAGGAGTGTGCTAGCCAAAGG-ATAATTTT-AAACCTG  47

seq1  GCTGTAGAGTGGCTTTCCTAAGCAGCTCTGTGTTTGGGTCTGGCATGCTC  100
       ||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGAGTGGCTTTCCTAAGCAGCTCTGTGTTTGGGTCTGGCATGCTC  97

seq1  AGTTAGTTGACACCAGCATAAGGTTTTTTAATCTCCTATCTCTCTTTTTC  150
      ||||||||||||||||||||||| |||||||||||||||||||| |||||
seq2  AGTTAGTTGACACCAGCATAAGG-TTTTTAATCTCCTATCTCTC-TTTTC  145

seq1  TCTCTCTCTGCTTTTAGAAGTAACAAAAGTTCGAAGAAACCTCTTCAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTGCTTTTAGAAGTAACAAAAGTTCGAAGAAACCTCTTCAACC  195

seq1  AGGAAATGCTTTCTCCTTCAAAGAGGGGGCTAAAGAAGGGGCTGCCTCGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGCTTTCTCCTTCAAAGAGGGGGCTAAAGAAGGGGCTGCCTCGC  245

seq1  AGCCATTCTGTATCTGCTTTGGAATGTCTCCACCATAAACAGGACAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTCTGTATCTGCTTTGGAATGTCTCCACCATAAACAGGACAAGTT  295

seq1  CAAGAAGACCAAAAGCAGCACATTTCAGGGTAACTACAAAATAAGGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGACCAAAAGCAGCACATTTCAGGGTAACTACAAAATAAGGGTTT  345

seq1  GTAACAACAAATCTGCTGGTGACATTGTTCGCACTTCTATTCCCACATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAACAAATCTGCTGGTGACATTGTTCGCACTTCTATTCCCACATTA  395

seq1  GTAATTGAGTCGTTCTGGTTTTTCTTGACTGGTTTAGCTAAAGGTTGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTGAGTCGTTCTGGTTTTTCTTGACTGGTTTAGCTAAAGGTTGGCC  445

seq1  AATTTTATTGATCATTTGAAGAAAGTTGGCCTTTTCTCCATTGACTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTATTGATCATTTGAAGAAAGTTGGCCTTTTCTCCATTGACTTTCT  495

seq1  GACCTCACTTTCCTTCCCGCTACTTGCTTTGGGTTTTAGCTTGTTGGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCACTTTCCTTCCCGCTACTTGCTTTGGGTTTTAGCTTGTTGGTTT  545

seq1  TTCTTTTTTCTTTTTTTTTAAAGTTTTTGTTATTGGTTTTGTTTGGGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTTCTTTTTTTTTAAAGTTTTTGTTATTGGTTTTGTTTGGGGGC  595

seq1  AGGGTGTGGACAATAAGGTGTCTCATTGTGGATCTCTTTGGGGTCATCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGTGGACAATAAGGTGTCTCATTGTGGATCTCTTTGGGGTCATCTT  645

seq1  TCTTGAAGTCTATTAAACTTGAGTGGTTAGGTTCATGTCTTTCCTCTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAGTCTATTAAACTTGAGTGGTTAGGTTCATGTCTTTCCTCTGAT  695

seq1  TAAGGAAGTTTTCAACCATTTTTCTTCAGCAATGTTTTCTGCCTCTTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAGTTTTCAACCATTTTTCTTCAGCAATGTTTTCTGCCTCTTTGT  745

seq1  CTTTTCACCTTCTAGAATTCCCATGAGGCATGTGGTGGCATGCATGCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCACCTTCTAGAATTCCCATGAGGCATGTGGTGGCATGCATGCTGC  795

seq1  TATAGTGTACAAGCATGCCTCAGTCTTTCTTCATTTTTCTTTTTCTTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGTACAAGCATGCCTCAGTCTTTCTTCATTTTTCTTTTTCTTTTT  845

seq1  TGTGGTTAGGCGGTTTAATTTTTTTTTTTTTTTTTTTTTGACATTCATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTAGGCGGTTTAATTTTTTTTTTTTTTTTTTTTTGACATTCATTG  895

seq1  ATTATTCTGCCTGCTCAGGCCTGTGATTGAATTC  934
      ||||||||||||||||||||||||||||||||||
seq2  ATTATTCTGCCTGCTCAGGCCTGTGATTGAATTC  929