BAC Information

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BAC

Clone NameB6Ng01-006A02
Chromosome7 (Build37)
Map Location 27,844,724 - 28,015,131
singlet/doubletdoublet
Overlap geneCyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc
Upstream geneCyp2b13, EG668047, LOC623532, Cyp2b9, LOC667968, Cyp2a4, Nlrp9c, LOC100043195, Nlrp4a, Nlrp9a, V1re12, EG243881, LOC623830, Cyp2b19, Cyp2g1, LOC100043745, Cyp2a5, EG233005, EG330491, Cyp2a12, LOC100043199
Downstream geneAdck4, Numbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006A02.bB6Ng01-006A02.g
ACCDH842982DH842983
length552856
definitionDH842982|Mus musculus domesticus DNA, BAC clone: B6Ng01-006A02, 5' end.DH842983|Mus musculus domesticus DNA, BAC clone: B6Ng01-006A02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,844,724 - 27,845,281)(28,014,282 - 28,015,131)
sequence
taaagccagagagatataagacagtcaaggtatcacgttgagatagcaat
ggctactgtgataagtaagaggttcttagagatgccatgccaaaagaaga
tgaaagactcactattggtagacaatattcagcgtgagcctagaagctta
cattcaggactatgaaaaggtagctactacaggatcaaaactgagccttg
atcttcaaacaggagcatcagatagaatgtgaaatcagagtttcagagtt
ggggttgttctcagcttaccttggtggagcccctttgggcttggcaggca
ctgatggcaggtccttggagttatgggctgacacaacctccacctgagag
gcatgccatgctagcagacccagtattgacacacattggaaagtattcat
tacttctggactctgaaacctggagggacaaagggcagacataggaaaga
tgtttgttggtttgggatggagaaagattgagtgggtccaacctggtggg
tattagtctatcacatgatgctttctggccagtgcctggaatggtatctg
cc
gaattctttcctaaaaaggtcttacctatgtactttattattcgaggcag
ggtttctatatgtagctctggctgacctggaactagcataaattcacaga
gatctgtctgcctctgtcctgagtactggggattaaaggtgtgtgccacc
ctgccagccttaaaaagatttaattttatgtgtgcgggtaattttgcctg
caaatgtctgtgcatgctatgcatgccctgaagaaaccacaagagggtgt
tcaatgccctagaattgtggttagagatgattgtgaacccccattcaggg
tgctagaaaccaaactcccaattcttcaagagagcgactaatggctctta
actacagatccatctctccagccctgagactgtttttgttgtttttcttt
ttctttcttccttccttcctctctctctctctttctctctctcccctgtt
gttgttggtttgtttgtttttcaagacagggtttctcagtatagcccctg
gctgtcctggaactcactctgtagaccaggctggcctcaaactcagaaat
ccgcctgcctctgcctcccaagagctgggattaaaggcgtgcgccaccac
cgcccgggtttttgttgtttttcaagacatggtttctgtgtaatagccct
ggctgtcctagaactcactttgtagatcaggctggccttgaactcagaaa
tctgcctgcctttgactcctttagtacagtaattaacggtgtagggcaca
tacccggctagccctggaattctttgaaaacaaacacatattaaatttat
ttatccacaaatctccgcactctgcagttcctggggctcgaactcaggac
atcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_27844724_27845281
seq2: B6Ng01-006A02.b_35_592

seq1  GAATTCTAAAGCCAGAGAGATATAAGACAGTCAAGGTATCACGTTGAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAGCCAGAGAGATATAAGACAGTCAAGGTATCACGTTGAGAT  50

seq1  AGCAATGGCTACTGTGATAAGTAAGAGGTTCTTAGAGATGCCATGCCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGGCTACTGTGATAAGTAAGAGGTTCTTAGAGATGCCATGCCAAA  100

seq1  AGAAGATGAAAGACTCACTATTGGTAGACAATATTCAGCGTGAGCCTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATGAAAGACTCACTATTGGTAGACAATATTCAGCGTGAGCCTAGA  150

seq1  AGCTTACATTCAGGACTATGAAAAGGTAGCTACTACAGGATCAAAACTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTACATTCAGGACTATGAAAAGGTAGCTACTACAGGATCAAAACTGA  200

seq1  GCCTTGATCTTCAAACAGGAGCATCAGATAGAATGTGAAATCAGAGTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGATCTTCAAACAGGAGCATCAGATAGAATGTGAAATCAGAGTTTC  250

seq1  AGAGTTGGGGTTGTTCTCAGCTTACCTTGGTGGAGCCCCTTTGGGCTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGGGGTTGTTCTCAGCTTACCTTGGTGGAGCCCCTTTGGGCTTGG  300

seq1  CAGGCACTGATGGCAGGTCCTTGGAGTTATGGGCTGACACAACCTCCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACTGATGGCAGGTCCTTGGAGTTATGGGCTGACACAACCTCCACC  350

seq1  TGAGAGGCATGCCATGCTAGCAGACCCAGTATTGACACACATTGGAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGCATGCCATGCTAGCAGACCCAGTATTGACACACATTGGAAAGT  400

seq1  ATTCATTACTTCTGGACTCTGAAACCTGGAGGGACAAAGGGCAGACATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTACTTCTGGACTCTGAAACCTGGAGGGACAAAGGGCAGACATAG  450

seq1  GAAAGATGTTTGTTGGTTTGGGATGGAGAAAGATTGAGTGGGTCCAACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATGTTTGTTGGTTTGGGATGGAGAAAGATTGAGTGGGTCCAACCT  500

seq1  GGTGGGTATTAGTCTATCACATGATGCTTTCTGGCCAGTGCCTGGGATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGTGGGTATTAGTCTATCACATGATGCTTTCTGGCCAGTGCCTGGAATGG  550

seq1  TATCTGCC  558
      ||||||||
seq2  TATCTGCC  558

seq1: chr7_28014282_28015131
seq2: B6Ng01-006A02.g_66_921 (reverse)

seq1  TCTGATGTCCTGAGTTCGAG-CCCAGG-ACTGCAGAGTGC-GAGATTTGT  47
      |||||||||||||||||||| |||||| |||||||||||| |||||||||
seq2  TCTGATGTCCTGAGTTCGAGCCCCAGGAACTGCAGAGTGCGGAGATTTGT  50

seq1  GGATAAATAAATTT-ATATGTGTTTGTTTTCAAAGAATTCCAGGGCTAGC  96
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGATAAATAAATTTAATATGTGTTTGTTTTCAAAGAATTCCAGGGCTAGC  100

seq1  CGGGTATGTGCCCTACACCGTTAATTACTGTACT-AAGGAGTCAAAGGCA  145
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CGGGTATGTGCCCTACACCGTTAATTACTGTACTAAAGGAGTCAAAGGCA  150

seq1  GGCAGATTTCTGAGTTCAAGGCCAGCCTGATCTACAAAGTGAGTTCTAGG  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATTTCTGAGTTCAAGGCCAGCCTGATCTACAAAGTGAGTTCTAGG  200

seq1  ACAGCCAGGGCTATTACACAGAAACCATGTCTTGAAAAACAAC-AAAACC  244
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACAGCCAGGGCTATTACACAGAAACCATGTCTTGAAAAACAACAAAAACC  250

seq1  CGGGCGGTGGTGGCGCACGCCTTTAATCCCAGCTCTTGGGAGGCAGAGGC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCGGTGGTGGCGCACGCCTTTAATCCCAGCTCTTGGGAGGCAGAGGC  300

seq1  AGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAG  350

seq1  GACAGCCAGGGGCTATACTGAGAAACCCTGTCTTGAAAAACAAACAAACC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCAGGGGCTATACTGAGAAACCCTGTCTTGAAAAACAAACAAACC  400

seq1  AACAACAACAGGGGAGAGAGAGAAAGAGAGAGAGAGAGGAAGGAAGGAAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAACAGGGGAGAGAGAGAAAGAGAGAGAGAGAGGAAGGAAGGAAG  450

seq1  AAAGAAAAAGAAAAACAACAAAAACAGTCTCAGGGCTGGAGAGATGGATC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAAGAAAAACAACAAAAACAGTCTCAGGGCTGGAGAGATGGATC  500

seq1  TGTAGTTAAGAGCCATTAGTCGCTCTCTTGAAGAATTGGGAGTTTGGTTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTAAGAGCCATTAGTCGCTCTCTTGAAGAATTGGGAGTTTGGTTT  550

seq1  CTAGCACCCTGAATGGGGGTTCACAATCATCTCTAACCACAATTCTAGGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACCCTGAATGGGGGTTCACAATCATCTCTAACCACAATTCTAGGG  600

seq1  CATTGAACACCCTCTTGTGGTTTCTTCAGGGCATGCATAGCATGCACAGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAACACCCTCTTGTGGTTTCTTCAGGGCATGCATAGCATGCACAGA  650

seq1  CATTTGCAGGCAAAATTACCCGCACACATAAAATTAAATCTTTTTAAGGC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCAGGCAAAATTACCCGCACACATAAAATTAAATCTTTTTAAGGC  700

seq1  TGGCAGGGTGGCACACACCTTTAATCCCCAGTACTCAGGACAGAGGCAGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGGTGGCACACACCTTTAATCCCCAGTACTCAGGACAGAGGCAGA  750

seq1  CAGATCTCTGTGAATTTATGCTAGTTCCAGGTCAGCCAGAGCTACATATA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTCTGTGAATTTATGCTAGTTCCAGGTCAGCCAGAGCTACATATA  800

seq1  GAAACCCTGCCTCGAATAATAAAGTACATAGGTAAGACCTTTTTAGGAAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCTGCCTCGAATAATAAAGTACATAGGTAAGACCTTTTTAGGAAA  850

seq1  GAATTC  850
      ||||||
seq2  GAATTC  856