BAC Information

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BAC

Clone NameB6Ng01-006D04
Chromosome7 (Build37)
Map Location 7,709,898 - 7,824,476
singlet/doubletdoublet
Overlap geneEG625353, Vmn2r-ps40
Upstream geneUsp29, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636, LOC665485
Downstream geneVmn2r36, LOC638170, LOC100042662, LOC100041942, LOC100042673, LOC100041949, LOC100042681, LOC100042688, LOC100042695, LOC100041956, LOC100041961, LOC100042703, LOC100041967, LOC100042724, LOC100041977, LOC100041983, LOC100041989, LOC100041998
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006D04.bB6Ng01-006D04.g
ACCDH843125DH843126
length1,2171,019
definitionDH843125|Mus musculus domesticus DNA, BAC clone: B6Ng01-006D04, 5' end.DH843126|Mus musculus domesticus DNA, BAC clone: B6Ng01-006D04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,823,282 - 7,824,476)(7,709,898 - 7,710,917)
sequence
gaattcaagaagctggactccagaaaaccaaataaccccattaaaaatgg
ggtacaaagagagctaagcaaagaattctcaactgaggaatactgaatgg
ctgagaagcacctaaagaaatgttcaacatccttaatgatcagtgaaatg
cgaatcaaaacaaccctgagattccatttcacaccagtcagaatggctga
gaacaaaaattcagttgctagcagatgctggggaggatgtggtaaaagag
gaacactcctccattgctgatgggatggcgagctggtacaaccactctgg
aaatcaatctggtgtttcatcagaaaattggcaaatatagaactaatgga
agatccagcaatatctctcctgttcatatacccagaagatgttcccattt
gtaataggatatatgctccactatgttcatagcaacattatttataatag
ctatgtaaccctggctgtcctaaaactcactgtgtagtccaggctgacct
tgaactccatcatatgtctgctatatgtaccaatgccacagggcagcaaa
gaccatcgttatgagcgaaaaaattaataaataaaatgggactgtaagac
tggatcactatcagggacatcagccctctgcctgggcttagcacacacat
cccagagttgcaaaaatcaggtaaactaagtgtcctctgccaccccatag
agcatctccaggccctcagacagggctgtccagagaggcacatgaatgtg
ggtgattttacccaaggcttagacgagttataccgtggtggtgcaaattt
cagacctgtctaggctccaggtggatgaatggcttttctctctctctctc
cctctctctctctctctctctctctctcctttctttctttcctttgagtc
agcctttctctgtgtagccttggctgcactagtggtagaccaagctagcc
acaaactcagatatcccactgggattatattgtatgcactaacacctcct
gccacccctttctgcctttattgccccacagtgggttttggtttattgta
gttcaaccaaccttccccatggataccacgaccagttgccgaaaatgacc
ggggagacctatgtggttaagaggttaggggatcccttacgactaaatca
tttctttgccagtgttcttcccccccccccccccccttgaagctgcttgc
tggagacttccttctga
gaattcactagcccaaacacactgacatacaaagtaatattaagtggaat
atcaatggtttgtgtgtttgtgtgtgtgtgtgcatgtgtgtgattgtgtg
tatgtgtgtgcatgtaaacataataaaagtgctcattaatttgaaaattg
tgtcttatatgtgtacaagaagaatataagtgtgagagatgagtgttgta
aaattatgatattagtccttgaaatctgtaaaaatagtaataacatgcac
tcagtcggatcctcatctgacagtagggtcactgagctcttgagactttt
taataactagcaataaccctatcattaattgggaaacattctctctctat
tttattttttatttttcattctttatttacatttcaaatgttatccacgt
accaggtttcccatctaagtgcccccaatttcatcctccttcctttgact
ccaaggagatgctcccatacccacccacccactcccttttatttattaga
aaccctacagctccaggggaaaaaagaaaaccctacatcctgattctatt
ggctttaagatcactcatctacttcccattcaaaaatttccatttctgtt
agacttatactttagtatagtgaagatggtattgattaatttccatgcag
aaaaaaaaacaacaaaatcaaataagaatggtgaaagagaatgtatgtgt
tcagcaatcttaccccattcatcagatgtaatacctactgtaacaagctt
aagaaatgttctgaaagatctaataagctgatgaaagaatcagatgagat
tatgtaaatccatccagttgacagaagctgctgacactttgtggttgaat
ttggtttaaagctggaagacctgggaaaggagggtgaaccctatagaagg
acctgcagtcttcactaacctgaaactctgaatctctcaacactggccac
caaccttgtatcaacatcagtgctataaggtccctaccacaatttcggcg
agggactgacaaggtctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_7823282_7824476
seq2: B6Ng01-006D04.b_70_1263 (reverse)

seq1  TCAGAAGGAAAGTCTCCAGC-AGCAGCTTCCAGAGGGGTGGGGTGGGGGG  49
      |||||||| ||||||||||| ||||||||| || |||| |||| ||||||
seq2  TCAGAAGG-AAGTCTCCAGCAAGCAGCTTCAAG-GGGGGGGGGGGGGGGG  48

seq1  AAGGGAACACTGAGCATATGTAAATGGATCTAGTCTGTAGGGAGTCCCCT  99
      ||  |||||||| ||| |   |||| ||| ||||| ||| ||  ||||||
seq2  AA--GAACACTG-GCAAA--GAAAT-GATTTAGTC-GTAAGGGATCCCCT  91

seq1  TAACTCCTTA-CACATTAGTTCTCCACTGTCCATCTCTGCAACT-GTCCT  147
       | ||| | | |||| ||| ||||| | |||  | || |||||| ||| |
seq2  AACCTCTTAACCACA-TAGGTCTCCCCGGTCATTTTCGGCAACTGGTCGT  140

seq1  GGTATCCATGGTGAA-GTTGTTTGAACTAC-ATTAACCAAAACCCACTGT  195
      ||||||||||| ||| |||| ||||||||| || ||||||||||||||||
seq2  GGTATCCATGGGGAAGGTTGGTTGAACTACAATAAACCAAAACCCACTGT  190

seq1  GTG--CATAAAGGCAGGAA-GAGTGGCAGGAGGTGTTAGTGCATAC-ATA  241
      | |   |||||||||| || | |||||||||||||||||||||||| |||
seq2  GGGGCAATAAAGGCAGAAAGGGGTGGCAGGAGGTGTTAGTGCATACAATA  240

seq1  TAATCCCAGT-GGATATCTGAGTTTGTGGCTAGCTTGGTCTACCACCTAG  290
      |||||||||| |||||||||||||||||||||||||||||||||| ||||
seq2  TAATCCCAGTGGGATATCTGAGTTTGTGGCTAGCTTGGTCTACCA-CTAG  289

seq1  TGCAGCCAAGGCTACACAGAGAAAGGCTGACTCAAAGGAAAGAAAGAAAG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCAAGGCTACACAGAGAAAGGCTGACTCAAAGGAAAGAAAGAAAG  339

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAAAAGCCAT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAAAAGCCAT  389

seq1  TCATCCACCTGGAGCCTAGACAGGTCTGAAATTTGCACCACCACGGTATA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCACCTGGAGCCTAGACAGGTCTGAAATTTGCACCACCACGGTATA  439

seq1  ACTCGTCTAAGCCTTGGGTAAAATCACCCACATTCATGTGCCTCTCTGGA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGTCTAAGCCTTGGGTAAAATCACCCACATTCATGTGCCTCTCTGGA  489

seq1  CAGCCCTGTCTGAGGGCCTGGAGATGCTCTATGGGGTGGCAGAGGACACT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTGTCTGAGGGCCTGGAGATGCTCTATGGGGTGGCAGAGGACACT  539

seq1  TAGTTTACCTGATTTTTGCAACTCTGGGATGTGTGTGCTAAGCCCAGGCA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTACCTGATTTTTGCAACTCTGGGATGTGTGTGCTAAGCCCAGGCA  589

seq1  GAGGGCTGATGTCCCTGATAGTGATCCAGTCTTACAGTCCCATTTTATTT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCTGATGTCCCTGATAGTGATCCAGTCTTACAGTCCCATTTTATTT  639

seq1  ATTAATTTTTTCGCTCATAACGATGGTCTTTGCTGCCCTGTGGCATTGGT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTTTTTCGCTCATAACGATGGTCTTTGCTGCCCTGTGGCATTGGT  689

seq1  ACATATAGCAGACATATGATGGAGTTCAAGGTCAGCCTGGACTACACAGT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATAGCAGACATATGATGGAGTTCAAGGTCAGCCTGGACTACACAGT  739

seq1  GAGTTTTAGGACAGCCAGGGTTACATAGCTATTATAAATAATGTTGCTAT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTAGGACAGCCAGGGTTACATAGCTATTATAAATAATGTTGCTAT  789

seq1  GAACATAGTGGAGCATATATCCTATTACAAATGGGAACATCTTCTGGGTA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATAGTGGAGCATATATCCTATTACAAATGGGAACATCTTCTGGGTA  839

seq1  TATGAACAGGAGAGATATTGCTGGATCTTCCATTAGTTCTATATTTGCCA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAACAGGAGAGATATTGCTGGATCTTCCATTAGTTCTATATTTGCCA  889

seq1  ATTTTCTGATGAAACACCAGATTGATTTCCAGAGTGGTTGTACCAGCTCG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGATGAAACACCAGATTGATTTCCAGAGTGGTTGTACCAGCTCG  939

seq1  CCATCCCATCAGCAATGGAGGAGTGTTCCTCTTTTACCACATCCTCCCCA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCATCAGCAATGGAGGAGTGTTCCTCTTTTACCACATCCTCCCCA  989

seq1  GCATCTGCTAGCAACTGAATTTTTGTTCTCAGCCATTCTGACTGGTGTGA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGCTAGCAACTGAATTTTTGTTCTCAGCCATTCTGACTGGTGTGA  1039

seq1  AATGGAATCTCAGGGTTGTTTTGATTCGCATTTCACTGATCATTAAGGAT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAATCTCAGGGTTGTTTTGATTCGCATTTCACTGATCATTAAGGAT  1089

seq1  GTTGAACATTTCTTTAGGTGCTTCTCAGCCATTCAGTATTCCTCAGTTGA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAACATTTCTTTAGGTGCTTCTCAGCCATTCAGTATTCCTCAGTTGA  1139

seq1  GAATTCTTTGCTTAGCTCTCTTTGTACCCCATTTTTAATGGGGTTATTTG  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCTTAGCTCTCTTTGTACCCCATTTTTAATGGGGTTATTTG  1189

seq1  GTTTT  1195
      |||||
seq2  GTTTT  1194

seq1: chr7_7709898_7710917
seq2: B6Ng01-006D04.g_63_1081

seq1  GAATTCACTAGCCCAAACACACTGACATACAAAGTAATATTAAGTGGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGCCCAAACACACTGACATACAAAGTAATATTAAGTGGAAT  50

seq1  ATCAATGGTTTGTGTGTTTGTGTGTGTGTGTGCATGTGTGTGATTGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGGTTTGTGTGTTTGTGTGTGTGTGTGCATGTGTGTGATTGTGTG  100

seq1  TATGTGTGTGCATGTAAACATAATAAAAGTGCTCATTAATTTGAAAATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGTGCATGTAAACATAATAAAAGTGCTCATTAATTTGAAAATTG  150

seq1  TGTCTTATATGTGTACAAGAAGAATATAAGTGTGAGAGATGAGTGTTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTATATGTGTACAAGAAGAATATAAGTGTGAGAGATGAGTGTTGTA  200

seq1  AAATTATGATATTAGTCCTTGAAATCTGTAAAAATAGTAATAACATGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATGATATTAGTCCTTGAAATCTGTAAAAATAGTAATAACATGCAC  250

seq1  TCAGTCGGATCCTCATCTGACAGTAGGGTCACTGAGCTCTTGAGACTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCGGATCCTCATCTGACAGTAGGGTCACTGAGCTCTTGAGACTTTT  300

seq1  TAATAACTAGCAATAACCCTATCATTAATTGGGAAACATTCTCTCTCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACTAGCAATAACCCTATCATTAATTGGGAAACATTCTCTCTCTAT  350

seq1  TTTATTTTTTATTTTTCATTCTTTATTTACATTTCAAATGTTATCCACGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTTATTTTTCATTCTTTATTTACATTTCAAATGTTATCCACGT  400

seq1  ACCAGGTTTCCCATCTAAGTGCCCCCAATTTCATCCTCCTTCCTTTGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTTTCCCATCTAAGTGCCCCCAATTTCATCCTCCTTCCTTTGACT  450

seq1  CCAAGGAGATGCTCCCATACCCACCCACCCACTCCCTTTTATTTATTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGAGATGCTCCCATACCCACCCACCCACTCCCTTTTATTTATTAGA  500

seq1  AACCCTACAGCTCCAGGGGAAAAAAGAAAACCCTACATCCTGATTCTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTACAGCTCCAGGGGAAAAAAGAAAACCCTACATCCTGATTCTATT  550

seq1  GGCTTTAAGATCACTCATCTACTTCCCATTCAAAAATTTCCATTTCTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTAAGATCACTCATCTACTTCCCATTCAAAAATTTCCATTTCTGTT  600

seq1  AGACTTATACTTTAGTATAGTGAAGATGGTATTGATTAATTTCCATGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTATACTTTAGTATAGTGAAGATGGTATTGATTAATTTCCATGCAG  650

seq1  AAAAAAAAACAACAAAATCAAATAAGAATGGTGAAAGAGAATGTATGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAACAACAAAATCAAATAAGAATGGTGAAAGAGAATGTATGTGT  700

seq1  TCAGCAATCTTACCCCATTCATCAGATGTAATACCTACTGTAACAAGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAATCTTACCCCATTCATCAGATGTAATACCTACTGTAACAAGCTT  750

seq1  AAGAAATGTTCTGAAAGATCTAATAAGCTGATGAAAGAATCAGATGAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATGTTCTGAAAGATCTAATAAGCTGATGAAAGAATCAGATGAGAT  800

seq1  TATGTAAATCCATCCAGTTGACAGAAGCTGCTGACAC-TTGTGGTTGAA-  848
      ||||||||||||||||||||||||||||||||||||| ||||||||||| 
seq2  TATGTAAATCCATCCAGTTGACAGAAGCTGCTGACACTTTGTGGTTGAAT  850

seq1  TTGGTTAAAAGCTGGAAGAACCTGGG-AAGGAGGGTGAA-CCTAGAGAAG  896
      |||||| ||||||||||| ||||||| |||||||||||| |||| |||||
seq2  TTGGTTTAAAGCTGGAAG-ACCTGGGAAAGGAGGGTGAACCCTATAGAAG  899

seq1  GACCTGCAGTCTTCACTAACCTGAAACCCTGAAATCTCTCAAACACTGGG  946
      ||||||||||||||||||||||||||| ||| |||||||| |||||| ||
seq2  GACCTGCAGTCTTCACTAACCTGAAACTCTG-AATCTCTC-AACACT-GG  946

seq1  CCACCAACCATGTATCATACATCAGTTGCTATAAGGTCCCTACCACATAT  996
      ||||||||| ||||||| ||||||| |||||||||||||||||||||  |
seq2  CCACCAACCTTGTATCA-ACATCAG-TGCTATAAGGTCCCTACCACAATT  994

seq1  ACAGCAGAGGACTGACAA-GTCTGA  1020
       | ||   |||||||||| ||||||
seq2  TCGGCGAGGGACTGACAAGGTCTGA  1019