BAC Information

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BAC

Clone NameB6Ng01-006E13
Chromosome7 (Build37)
Map Location 7,949,718 - 7,950,770
singlet/doubletsinglet
Overlap genenone
Upstream geneAurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636, LOC665485, EG625353, Vmn2r-ps40, Vmn2r36, LOC638170
Downstream geneLOC100042662, LOC100041942, LOC100042673, LOC100041949, LOC100042681, LOC100042688, LOC100042695, LOC100041956, LOC100041961, LOC100042703, LOC100041967, LOC100042724, LOC100041977, LOC100041983, LOC100041989, LOC100041998, LOC100042009, LOC100042754
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006E13.bB6Ng01-006E13.g
ACCDH843187DH843188
length1,1791,036
definitionDH843187|Mus musculus domesticus DNA, BAC clone: B6Ng01-006E13, 5' end.DH843188|Mus musculus domesticus DNA, BAC clone: B6Ng01-006E13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgcttacctctgagccccattttttaatggggttatttgatt
ttctggagtctaccttcttgattctttatatatattggatattagtcccc
tatcctatttaggataggtaaagatccttttccgacctgttggtggcctt
tttgtctcattgacagtgtctttttccccgcagaaatttgcagtttcctg
aggtcccatttgtcaattctcaaccttacagaactagccattgcttttgt
attcaagaatttttcccctgtgccccatatctttgaggcttttccccact
ttctcctctataagtttcagtgtctctggttttatgtcgagctcgttgat
ccacttagatttgaccttagtccaaggagataggaatcgatcaattcgca
ttcttctacatgataaccaccagtggtgccagcaccatttgttgaaaatg
ctgtcttttttccactggatggtttttgctcccttgtcaaagatcaagtg
accatagatgtgtgggttcatttctgggtcttcaattctattccaatggt
ctacttgtctgttgatataccagtacaatgcagtttttatcacaattgct
ctctagtacagctttaggtcaggcatggtgattccaccacaggttctttt
atccttgagaagggtttttgctatcctaggttttttgttattccagatga
ttctggcaattgccctttctaattcattgaagaattgatttggaattttg
atggggattgcactgaatctgtagtttgcttttggcaacatagccatttt
tacaatattgatcctggcaatctatgagcattggagacctttctttcttc
tgagatcttctttaattactttcatcagagacttaaagttcttatcatac
agatctttcaattcttatttagggcctgcgaaggataatacattatttgt
gactatttgaagaaaggggttgttttccctatttcttctcagcctggtta
atctttggtatgaacaaaaccctgactggttgatgtatattaaataacag
cttacttacttgagctttatcagttaagggtttcgtggtgaattttagct
cctataataatactacctactgcaaagaggaatgtgatcttctcaatgat
ccctggctccctctgtggtcaatacatgc
gaattcagaaatctgttgctgcctgctgcaaacaggtcctatgcacaaga
atccatggtataattattgagatttctttcagtgctctaaaatatttaat
gtgataattataacatttctctctttctcttttctgattccctttcccat
ccctttccctatcccttctctttccctttcccttccctttccggttccct
tttctctttcttctctttcttctttttcttctcttccccccctctctctc
cctctcactctcctcctctctctctccctctccctctcccccatctttct
ctcattctatttcttgttctctttcttgttctcattctttctctttcttt
ttctctttcactctctctccttctcctcctctccctctcacccatctttc
tctcgttctatttcttgttctctttcttgttctcactctttctttttctc
tttcactctctccccctctccttctcttcctctccctcccacttctctgt
ctatctctttctcacatattctgctcctctaacacttaggatgagtaatg
atttacttatctttcctcctgcaaagggaaagaattttgtcatgtcactc
actctcccacacacttcttgtgtttttctcttagtaatcaactaatatca
aagtcacacattcacagagataccaaaataacttatctaagctcatgtta
actgttcttctggatcacagtaggaaaaataactcttccaaagtgccatg
ttatccgagagcagagccttgaaaaagatcagtgaatcataaattattat
atgagacaatgtataggaaaagcagttcgatttgttttgttcattttact
ttgttattttcattacaaagaaacactgagaaagtatatctaatacatac
atttaactgatgctaaatggtgcttcagaccaacactatatttcttagtt
acatcgataataggaaaataatcgatcaagagattttttcttaatcttga
gagattttttctctgacttaacaaattgcaaaacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_7949718_7950770
seq2: B6Ng01-006E13.g_65_1100

seq1  GAATTCAGAAATCTGTTGCTGCCTGCTGCAAACAGGTCCTATGCACAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAATCTGTTGCTGCCTGCTGCAAACAGGTCCTATGCACAAGA  50

seq1  ATCCATGGTATAATTATTGAGATTTCTTTCAGTGCTCTAAAATATTTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGGTATAATTATTGAGATTTCTTTCAGTGCTCTAAAATATTTAAT  100

seq1  GTGATAATTATAACATTTCTCTCTTTCTCTTTTCTGATTCCCTTTCCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAATTATAACATTTCTCTCTTTCTCTTTTCTGATTCCCTTTCCCAT  150

seq1  CCCTTTCCCTATCCCTTCTCTTTCCCTTTCCCTTCCCTTTCCGGTTCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCCCTATCCCTTCTCTTTCCCTTTCCCTTCCCTTTCCGGTTCCCT  200

seq1  TTTCTCTTTCTTCTCTTTCTTCTTTTTCTTCTCTTCCCCCCCTCTCTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTTCTTCTCTTTCTTCTTTTTCTTCTCTTCCCCCCCTCTCTCTC  250

seq1  CCTCTCACTCTCCTCCTCTCTCTCTCCCTCTCCCTCTCCCCCATCTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCACTCTCCTCCTCTCTCTCTCCCTCTCCCTCTCCCCCATCTTTCT  300

seq1  CTCATTCTATTTCTTGTTCTCTTTCTTGTTCTCATTCTTTCTCTTTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCTATTTCTTGTTCTCTTTCTTGTTCTCATTCTTTCTCTTTCTTT  350

seq1  TTCTCTTTCACTCTCTCTCCTTCTCCTCCTCTCCCTCTCACCCATCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTCACTCTCTCTCCTTCTCCTCCTCTCCCTCTCACCCATCTTTC  400

seq1  TCTCGTTCTATTTCTTGTTCTCTTTCTTGTTCTCACTCTTTCTTTTTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGTTCTATTTCTTGTTCTCTTTCTTGTTCTCACTCTTTCTTTTTCTC  450

seq1  TTTCACTCTCTCCCCCTCTCCTTCTCTTCCTCTCCCTCCCACTTCTCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTCTCTCCCCCTCTCCTTCTCTTCCTCTCCCTCCCACTTCTCTGT  500

seq1  CTATCTCTTTCTCACATATTCTGCTCCTCTAACACTTAGGATGAGTAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCTTTCTCACATATTCTGCTCCTCTAACACTTAGGATGAGTAATG  550

seq1  ATTTACTTATCTTTCCTCCTGCAAAGGGAAAGAATTTTGTCATGTCACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTTATCTTTCCTCCTGCAAAGGGAAAGAATTTTGTCATGTCACTC  600

seq1  ACTCTCCCACACACTTCTTGTG-TTTTCTCTTAGTAATCAACTAATATCA  649
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACTCTCCCACACACTTCTTGTGTTTTTCTCTTAGTAATCAACTAATATCA  650

seq1  AAGTCACACATTCACAGAGATACCAAAATAACTTATCTAAGCTCATGTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACACATTCACAGAGATACCAAAATAACTTATCTAAGCTCATGTTA  700

seq1  ACTGTTCTTCTGGATCACAGTAGG-AAAATAACTCTTCCAAAGTGCCATG  748
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACTGTTCTTCTGGATCACAGTAGGAAAAATAACTCTTCCAAAGTGCCATG  750

seq1  TTATCCGAGAGCAGAGCCTTGAAAAAGATCAGTGAATCAGTAAATTATTA  798
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTATCCGAGAGCAGAGCCTTGAAAAAGATCAGTGAATCA-TAAATTATTA  799

seq1  TATGAGACAATGTATAGGAAAAGCAGTTTCGATTTGTTTTGTTTCATTTT  848
      |||||||||||||||||||||||||| |||||||||||||| ||||||||
seq2  TATGAGACAATGTATAGGAAAAGCAG-TTCGATTTGTTTTG-TTCATTTT  847

seq1  ACTTTGTTTATTTTCCATTACAAAAGAAACACTGAGAAAGTATATCTAAT  898
      |||||| ||||||| |||||| ||||||||||||||||||||||||||||
seq2  ACTTTG-TTATTTT-CATTAC-AAAGAAACACTGAGAAAGTATATCTAAT  894

seq1  ACATACATTTTAACTGAATGCTAAATGGTGCTTCAGAACCAACACTATAT  948
      ||||||| |||||||| ||||||||||||||||||| |||||||||||||
seq2  ACATACA-TTTAACTG-ATGCTAAATGGTGCTTCAG-ACCAACACTATAT  941

seq1  TTCTTAGTTACAATCGATAATATGATAATATATCGATTCAGAGAGAATTT  998
      ||||||||||| |||||||||| || |||| ||||||  ||||   ||||
seq2  TTCTTAGTTAC-ATCGATAATAGGAAAATA-ATCGATCAAGAG---ATTT  986

seq1  TTTCCTTAAATCTTGAAGAGATTTTCTCTCTGACCTTAACAAAATTGCAA  1048
      ||||  | ||||||| ||||||||| ||||||| |||||| |||||||||
seq2  TTTC--TTAATCTTG-AGAGATTTTTTCTCTGA-CTTAAC-AAATTGCAA  1031

seq1  AACAT  1053
      |||||
seq2  AACAT  1036