BAC Information

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BAC

Clone NameB6Ng01-006F16
Chromosome7 (Build37)
Map Location 139,157,608 - 139,333,233
singlet/doubletdoublet
Overlap geneGpr26, Cpxm2
Upstream geneDmbt1, 4933402N03Rik, 5430419D17Rik, LOC546006, LOC100043173, Cuzd1, 1700007K09Rik, 1700063I17Rik, 2310057M21Rik, Pstk, Ikzf5, Acadsb, Hmx3, Hmx2, Bub3, LOC677073, LOC100043679
Downstream gene4631426J05Rik, LOC100043682, LOC100043683, Oat, Nkx1-2, 2310007H09Rik, A930008G19Rik, 2010208K18Rik, C430003P19Rik, Zranb1, Ctbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006F16.bB6Ng01-006F16.g
ACCDH843238DH843239
length836238
definitionDH843238|Mus musculus domesticus DNA, BAC clone: B6Ng01-006F16, 5' end.DH843239|Mus musculus domesticus DNA, BAC clone: B6Ng01-006F16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,332,398 - 139,333,233)(139,157,608 - 139,157,845)
sequence
gaattcttgagtgctttcaaacatattttaaaacatattttgtccagatt
ttctcttagtagcttcagcagaagggtttagttggagtatcttatgtctt
ctttctcagaattagaagttattaaaattgggtgaggcatttcagaaata
tttttgggggcccatttctacgtacacacacatatacacacatacaggcg
cacgcacacacacatcatgcacacacatacacacatatgcaaaaatgcat
gcacatatcacatgtgtatgcacacacgtgcacgacatgctgtgttcaca
tagaatttccttttctctgtcacaaatgccccactggcagattattttcc
tgatctgccctcatgtatcgggtcactcacttcataggcagccatcatgt
ctttaatacatggaacatcctgtcatattagtttgtgaaattattctatg
ttttttaaaaggaaggattgatgggaacatgggaggggaagagttatggc
tccctattgcacagcagaggaaagaagagagactgagggtgttgactaga
aggttcacattgaagacaaatgacaaagcccttaaaagtgtctgaagtct
atgaggacttctgcaggatggtattgatcaaggctgggctgcaggcacat
cgctgggtattcttaggacctggaatccatctcctcagaccatgttagga
accttgctacatgacagaagggtgaggtagcccggatgtctactatatca
catccaagaaaattgcacttgaagaactttcccaagagaaatatgtgctt
agctgtcatggggctaaagggttataccagtttggt
tatcccagctcagcagaagcctagccaagctccccagttcatcttagata
acagcagcaatcctagatgctgggcagctatggggcaggtggactgggtc
aaggtctggtcacctaggcagggacaagcagcactgggacatgagggtgc
ccagacattcttcccttttcctagatttcttgactcagcctgtctccagc
tcatataggggaggatagaaaggaaggggaggagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_139332398_139333233
seq2: B6Ng01-006F16.b_50_885 (reverse)

seq1  ACCAAACTGGTATAACCCTTTAGCCCCATGACAGCTAAGCACATATTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACTGGTATAACCCTTTAGCCCCATGACAGCTAAGCACATATTTCT  50

seq1  CTTGGGAAAGTTCTTCAAGTGCAATTTTCTTGGATGTGATATAGTAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAAAGTTCTTCAAGTGCAATTTTCTTGGATGTGATATAGTAGACA  100

seq1  TCCGGGCTACCTCACCCTTCTGTCATGTAGCAAGGTTCCTAACATGGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGGCTACCTCACCCTTCTGTCATGTAGCAAGGTTCCTAACATGGTCT  150

seq1  GAGGAGATGGATTCCAGGTCCTAAGAATACCCAGCGATGTGCCTGCAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGATGGATTCCAGGTCCTAAGAATACCCAGCGATGTGCCTGCAGCC  200

seq1  CAGCCTTGATCAATACCATCCTGCAGAAGTCCTCATAGACTTCAGACACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTGATCAATACCATCCTGCAGAAGTCCTCATAGACTTCAGACACT  250

seq1  TTTAAGGGCTTTGTCATTTGTCTTCAATGTGAACCTTCTAGTCAACACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGGCTTTGTCATTTGTCTTCAATGTGAACCTTCTAGTCAACACCC  300

seq1  TCAGTCTCTCTTCTTTCCTCTGCTGTGCAATAGGGAGCCATAACTCTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTCTCTTCTTTCCTCTGCTGTGCAATAGGGAGCCATAACTCTTCC  350

seq1  CCTCCCATGTTCCCATCAATCCTTCCTTTTAAAAAACATAGAATAATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCATGTTCCCATCAATCCTTCCTTTTAAAAAACATAGAATAATTTC  400

seq1  ACAAACTAATATGACAGGATGTTCCATGTATTAAAGACATGATGGCTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTAATATGACAGGATGTTCCATGTATTAAAGACATGATGGCTGCC  450

seq1  TATGAAGTGAGTGACCCGATACATGAGGGCAGATCAGGAAAATAATCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGTGAGTGACCCGATACATGAGGGCAGATCAGGAAAATAATCTGC  500

seq1  CAGTGGGGCATTTGTGACAGAGAAAAGGAAATTCTATGTGAACACAGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGGCATTTGTGACAGAGAAAAGGAAATTCTATGTGAACACAGCAT  550

seq1  GTCGTGCACGTGTGTGCATACACATGTGATATGTGCATGCATTTTTGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTGCACGTGTGTGCATACACATGTGATATGTGCATGCATTTTTGCAT  600

seq1  ATGTGTGTATGTGTGTGCATGATGTGTGTGTGCGTGCGCCTGTATGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTATGTGTGTGCATGATGTGTGTGTGCGTGCGCCTGTATGTGTG  650

seq1  TATATGTGTGTGTACGTAGAAATGGGCCCCCAAAAATATTTCTGAAATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTGTGTGTACGTAGAAATGGGCCCCCAAAAATATTTCTGAAATGC  700

seq1  CTCACCCAATTTTAATAACTTCTAATTCTGAGAAAGAAGACATAAGATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCCAATTTTAATAACTTCTAATTCTGAGAAAGAAGACATAAGATAC  750

seq1  TCCAACTAAACCCTTCTGCTGAAGCTACTAAGAGAAAATCTGGACAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTAAACCCTTCTGCTGAAGCTACTAAGAGAAAATCTGGACAAAAT  800

seq1  ATGTTTTAAAATATGTTTGAAAGCACTCAAGAATTC  836
      ||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTAAAATATGTTTGAAAGCACTCAAGAATTC  836

seq1: chr7_139157608_139157845
seq2: B6Ng01-006F16.g_74_311

seq1  TATCCCAGCTCAGCAGAAGCCTAGCCAAGCTCCCCAGTTCATCTTAGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCAGCTCAGCAGAAGCCTAGCCAAGCTCCCCAGTTCATCTTAGATA  50

seq1  ACAGCAGCAATCCTAGATGCTGGGCAGCTATGGGGCAGGTGGACTGGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGCAATCCTAGATGCTGGGCAGCTATGGGGCAGGTGGACTGGGTC  100

seq1  AAGGTCTGGTCACCTAGGCAGGGACAAGCAGCACTGGGACATGAGGGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTGGTCACCTAGGCAGGGACAAGCAGCACTGGGACATGAGGGTGC  150

seq1  CCAGACATTCTTCCCTTTTCCTAGATTTCTTGACTCAGCCTGTCTCCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACATTCTTCCCTTTTCCTAGATTTCTTGACTCAGCCTGTCTCCAGC  200

seq1  TCATATAGGGGAGGATAGAAAGGAAGGGGAGGAGGGGA  238
      ||||||||||||||||||||||||||||||||||||||
seq2  TCATATAGGGGAGGATAGAAAGGAAGGGGAGGAGGGGA  238