BAC Information

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BAC

Clone NameB6Ng01-006L20
Chromosome7 (Build37)
Map Location 27,179,443 - 27,309,341
singlet/doubletdoublet
Overlap geneLOC100043195, Nlrp4a
Upstream geneLipe, BC024561, LOC434148, Ceacam1, Ceacam2, LOC100043722, EG632778, 2310004L02Rik, B3gnt8, Bckdha, Exosc5, A830041P22Rik, BC028440, Tgfb1, Ccdc97, Hnrpul1, Axl, LOC667950, Cyp2s1, LOC100043732, EG623475, Cyp2b10, LOC232993, EG667957, BC026762, Cyp2b13, EG668047, LOC623532, Cyp2b9, LOC667968, Cyp2a4, Nlrp9c
Downstream geneNlrp9a, V1re12, EG243881, LOC623830, Cyp2b19, Cyp2g1, LOC100043745, Cyp2a5, EG233005, EG330491, Cyp2a12, LOC100043199, Cyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006L20.bB6Ng01-006L20.g
ACCDH843518DH843519
length1,101749
definitionDH843518|Mus musculus domesticus DNA, BAC clone: B6Ng01-006L20, 5' end.DH843519|Mus musculus domesticus DNA, BAC clone: B6Ng01-006L20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,308,313 - 27,309,341)(27,179,443 - 27,180,191)
sequence
gaattctctgtttttgaaccatgcacctcccctgtgtggtactttcatca
acaggttcttcttatctatctctgttgagtaaataagataaactgcaggt
actggtcgtattttgggagcctcagtcacttccccgaatatagcttaata
ggagctattccagctctggccttggcatttttgttttaggagcagatgtt
tccagccatgtagcgtatctccttgccaacaattcctttcattactttat
ataattaaaattttgttttcatatatcttctctctattctgtttttctgg
ttggttctgtttggtttttgagaccaagtttttactatatagccctggct
gtcctcagaaagattcacccttttggccacccaaaatattttattctgaa
aataaaggtattcagtacagttcatggacatccaagtgtttttcttagca
cctccgtttttattacacgccccccctttacctcctcaccattttttaag
tactccactcagtatctccaatttcccttcctgttacttatatttaactc
tgcttcctccataaagcaatccctcctattagctccatcttgccttcctg
ccttccacttgtgctcctcatgaagcacagaaacttaaaaactcaaagct
aaacacatgtgtgaaggagaatgtatgtgcagcacttgtgtttccattcc
tgagttaccttttcaatataacttctggattcacacatttacctccaaat
ttcatttttctctacagcagaataaacccccactgaacatatgttccatg
tttttgttatccttttgtcatttgatggacatctaggctgatttcctttc
cttgctattgtgagtagagcagcaatgaccatggatcaggaagtgtccac
gtagtaagatgcagagtctgttgggtatgtgggcaggaaagatagagttc
acccatatgatattctactttgaacttttagagagaatttctgcatgggt
tacatggtgtttgcatcagtgtttttcctccaccaccaatgatgaatgtt
cttattttcccacagccttaccatacctaatctctttgagatcttgatga
t
gaattcattgttaaaattaatggctagaaactggtggcacacacctttaa
ttccagcacttggaagcagacagaggcaggagcgtctctgagtttgaggg
cagcctgttctaaacagtgagttccaggacagccagggctacacagaaaa
actctgtcagtctcaaaaagtcaacaaaatcaaacaaaaccatttatact
aaggctacagtcagagaatgataaactaaaaaatttcaataaaatggtga
agttcatcaaaagagtcaaagaagtggagttgacttctcctgaagaccca
gctgtataattcttgcgcatttacccaaaagatgccctaccatgccacag
ggacaccagttctactatgttcatttatttgtaatagccagaagctggaa
acaaaccagatgtcccacaatagaagaatggatacagaaaatgtggttca
tttacacaataactcagctattaagaaagagggcatcatgagttttcagg
caaatggattgaactagaaaatatcctgagtgaggtaacacagaaacaaa
aggatatgcattgtatgtattcactaataagtggataccagccaataaga
atacagaattcccaggacacaacccacagaactcaagaaggctaacaagc
tgaagggaccaagtgaggatgcctcaatcccacttgggaaggagaagaaa
gcaatcacaggaggtatggaaggaggaacctgggtaggaaatgtgacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_27308313_27309341
seq2: B6Ng01-006L20.b_122_1146 (reverse)

seq1  ATCATCAAAGATCTCAAAGAAGATAGGTATTGGTAAGGCTGTGGGGAAAT  50
      |||||| |||||||||||||   |||||| ||||||||||||||| ||||
seq2  ATCATC-AAGATCTCAAAGAGATTAGGTA-TGGTAAGGCTGTGGGAAAAT  48

seq1  AAGAACATTTCATCATTGGTGGTGGAGG-AAAACACTGATGCAAACACCA  99
      ||||||| |||||||||||||||||||| |||||||||||||||||||||
seq2  AAGAACA-TTCATCATTGGTGGTGGAGGAAAAACACTGATGCAAACACCA  97

seq1  TGTAAACCATTGCAGAAATTCTCTCTAAAAGTTCAAAGTAGAATTATCAT  149
      ||||| ||| ||||||||||||||||||||||||||||||||| ||||||
seq2  TGTAACCCA-TGCAGAAATTCTCTCTAAAAGTTCAAAGTAGAA-TATCAT  145

seq1  ATGGGTGAACTCTATCTTTCCTGCCCACATACCCAACAGACTCTGCATCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTGAACTCTATCTTTCCTGCCCACATACCCAACAGACTCTGCATCT  195

seq1  TACTACGTGGACACTTCCTGATCCATGGTCATTGCTGCTCTACTCACAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACGTGGACACTTCCTGATCCATGGTCATTGCTGCTCTACTCACAAT  245

seq1  AGCAAGGAAAGGAAATCAGCCTAGATGTCCATCAAATGACAAAAGGATAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGAAAGGAAATCAGCCTAGATGTCCATCAAATGACAAAAGGATAA  295

seq1  CAAAAACATGGAACATATGTTCAGTGGGGGTTTATTCTGCTGTAGAGAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACATGGAACATATGTTCAGTGGGGGTTTATTCTGCTGTAGAGAAA  345

seq1  AATGAAATTTGGAGGTAAATGTGTGAATCCAGAAGTTATATTGAAAAGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATTTGGAGGTAAATGTGTGAATCCAGAAGTTATATTGAAAAGGT  395

seq1  AACTCAGGAATGGAAACACAAGTGCTGCACATACATTCTCCTTCACACAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGGAATGGAAACACAAGTGCTGCACATACATTCTCCTTCACACAT  445

seq1  GTGTTTAGCTTTGAGTTTTTAAGTTTCTGTGCTTCATGAGGAGCACAAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTAGCTTTGAGTTTTTAAGTTTCTGTGCTTCATGAGGAGCACAAGT  495

seq1  GGAAGGCAGGAAGGCAAGATGGAGCTAATAGGAGGGATTGCTTTATGGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCAGGAAGGCAAGATGGAGCTAATAGGAGGGATTGCTTTATGGAG  545

seq1  GAAGCAGAGTTAAATATAAGTAACAGGAAGGGAAATTGGAGATACTGAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGAGTTAAATATAAGTAACAGGAAGGGAAATTGGAGATACTGAGT  595

seq1  GGAGTACTTAAAAAATGGTGAGGAGGTAAAGGGGGGGCGTGTAATAAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTACTTAAAAAATGGTGAGGAGGTAAAGGGGGGGCGTGTAATAAAAA  645

seq1  CGGAGGTGCTAAGAAAAACACTTGGATGTCCATGAACTGTACTGAATACC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGGTGCTAAGAAAAACACTTGGATGTCCATGAACTGTACTGAATACC  695

seq1  TTTATTTTCAGAATAAAATATTTTGGGTGGCCAAAAGGGTGAATCTTTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTCAGAATAAAATATTTTGGGTGGCCAAAAGGGTGAATCTTTCT  745

seq1  GAGGACAGCCAGGGCTATATAGTAAAAACTTGGTCTCAAAAACCAAACAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAGCCAGGGCTATATAGTAAAAACTTGGTCTCAAAAACCAAACAG  795

seq1  AACCAACCAGAAAAACAGAATAGAGAGAAGATATATGAAAACAAAATTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACCAGAAAAACAGAATAGAGAGAAGATATATGAAAACAAAATTTT  845

seq1  AATTATATAAAGTAATGAAAGGAATTGTTGGCAAGGAGATACGCTACATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATATAAAGTAATGAAAGGAATTGTTGGCAAGGAGATACGCTACATG  895

seq1  GCTGGAAACATCTGCTCCTAAAACAAAAATGCCAAGGCCAGAGCTGGAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAACATCTGCTCCTAAAACAAAAATGCCAAGGCCAGAGCTGGAAT  945

seq1  AGCTCCTATTAAGCTATATTCGGGGAAGTGACTGAGGCTCCCAAAATACG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTATTAAGCTATATTCGGGGAAGTGACTGAGGCTCCCAAAATACG  995

seq1  ACCAGTACCTGCAGTTTATCTTATTTACTC  1029
      ||||||||||||||||||||||||||||||
seq2  ACCAGTACCTGCAGTTTATCTTATTTACTC  1025

seq1: chr7_27179443_27180191
seq2: B6Ng01-006L20.g_67_815

seq1  GAATTCATTGTTAAAATTAATGGCTAGAAACTGGTGGCACACACCTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTTAAAATTAATGGCTAGAAACTGGTGGCACACACCTTTAA  50

seq1  TTCCAGCACTTGGAAGCAGACAGAGGCAGGAGCGTCTCTGAGTTTGAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCACTTGGAAGCAGACAGAGGCAGGAGCGTCTCTGAGTTTGAGGG  100

seq1  CAGCCTGTTCTAAACAGTGAGTTCCAGGACAGCCAGGGCTACACAGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGTTCTAAACAGTGAGTTCCAGGACAGCCAGGGCTACACAGAAAA  150

seq1  ACTCTGTCAGTCTCAAAAAGTCAACAAAATCAAACAAAACCATTTATACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTCAGTCTCAAAAAGTCAACAAAATCAAACAAAACCATTTATACT  200

seq1  AAGGCTACAGTCAGAGAATGATAAACTAAAAAATTTCAATAAAATGGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTACAGTCAGAGAATGATAAACTAAAAAATTTCAATAAAATGGTGA  250

seq1  AGTTCATCAAAAGAGTCAAAGAAGTGGAGTTGACTTCTCCTGAAGACCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATCAAAAGAGTCAAAGAAGTGGAGTTGACTTCTCCTGAAGACCCA  300

seq1  GCTGTATAATTCTTGCGCATTTACCCAAAAGATGCCCTACCATGCCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTATAATTCTTGCGCATTTACCCAAAAGATGCCCTACCATGCCACAG  350

seq1  GGACACCAGTTCTACTATGTTCATTTATTTGTAATAGCCAGAAGCTGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACCAGTTCTACTATGTTCATTTATTTGTAATAGCCAGAAGCTGGAA  400

seq1  ACAAACCAGATGTCCCACAATAGAAGAATGGATACAGAAAATGTGGTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCAGATGTCCCACAATAGAAGAATGGATACAGAAAATGTGGTTCA  450

seq1  TTTACACAATAACTCAGCTATTAAGAAAGAGGGCATCATGAGTTTTCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACAATAACTCAGCTATTAAGAAAGAGGGCATCATGAGTTTTCAGG  500

seq1  CAAATGGATTGAACTAGAAAATATCCTGAGTGAGGTAACACAGAAACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGATTGAACTAGAAAATATCCTGAGTGAGGTAACACAGAAACAAA  550

seq1  AGGATATGCATTGTATGTATTCACTAATAAGTGGATACCAGCCAATAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATGCATTGTATGTATTCACTAATAAGTGGATACCAGCCAATAAGA  600

seq1  ATACAGAATTCCCAGGACACAACCCACAGAACTCAAGAAGGCTAACAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAATTCCCAGGACACAACCCACAGAACTCAAGAAGGCTAACAAGC  650

seq1  TGAAGGGACCAAGTGAGGATGCCTCAATCCCACTTGGGAAGGAGAAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGACCAAGTGAGGATGCCTCAATCCCACTTGGGAAGGAGAAGAAA  700

seq1  GCAATCACAGGAGGTATGGAAGGAGGAACCTGGGTAGGAAATGTGACAG  749
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCACAGGAGGTATGGAAGGAGGAACCTGGGTAGGAAATGTGACAG  749