BAC Information

Click to search

BAC

Clone NameB6Ng01-006P03
Chromosome1 (Build37)7 (Build37)
Map Location 34,724,383 - 34,725,345127,977,585 - 127,978,158
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePrim2, 1700001G17Rik, Rab23, Bag2, Zfp451, OTTMUSG00000022109, B230209C24Rik, Dst, LOC100040913, LOC383629, LOC100040938, Ccdc115, Imp4, Ptpn18, Tesp1, Cfc1, Tesp2, 9430069J07Rik, AA619741
Downstream geneArhgef4, BC043098, Plekhb2, LOC666261
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006P03.bB6Ng01-006P03.g
ACCDH843664DH843665
length1,015568
definitionDH843664|Mus musculus domesticus DNA, BAC clone: B6Ng01-006P03, 5' end.DH843665|Mus musculus domesticus DNA, BAC clone: B6Ng01-006P03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(34,724,383 - 34,725,345)(127,977,585 - 127,978,158)
sequence
gaattcattccttcttgggaatagagggaatgaggtgtgagtaagtttgt
gagtgtgtgggtagagaggagccagcagacgatggctgtatagagatccc
agcacagctggggggaggtcatctgctttaccactagatctcacccgctt
tcgctggtacaatgaacatcaaacgtacaaaaccggggcatggcaaaagc
tcagcccaagaaggtgccaatgacaacattcaggtgtcaaaccaatggtc
attggttctttcctctatgtccactgtcaggccagaccctggaaggggac
cagttcagcagagttgctccccacccccactgcactccccttatagaacc
cccatgtttttcatggttgggtcatagcaggccaggagacaggtgcagtg
gagccacaaaaggtcagaatcctgactccatcagcaggctcagagtcctc
cagtcacatagccagtgccaagggacctcagacatcatgcccccagacag
tattcactgtggccagctcatacccacccttaaggaaacctagctagggc
ttgactcagagtccttcaggacttagcttcccccagctgaaatgcagccc
aaccctggctacatttttatccatgctaaaagtcagccatatctttcatt
gaaacaaaataaaacagggtgcctggctgtgacacagatgttcagggggt
ggctggagagacagctcagaggtcaagaatgtgtactgctcttgcaacgg
gcccaagttcaattcccggcactgacatcagtcactcacaagcacccaca
atgtcagtgtctgaattcacttgcacacatccacaaagagtcatgcacac
atacacatgattaaaaactacaaaataaaaacttttttttttttaaaaaa
gataactagtagcccctgttctgagggattagactggaaagggtagtggc
agagtgtgtccttgcagggcagagggacattccagactgcttggtgctag
aaagaggagggaggg
ttctgtcctctctttatcgggtgggaaaggatacggtacccccacccaac
acacaaatccctgaaggattccgatgctaccctaattaccagcccctgtg
agattcacacaggaagggttggctcatttaaagaaactaaaggaggaagc
attgatgcagatgcagaagaaaggccactataaaccaatgacatagttta
tccgaatagggcaaccagtgagactggtttataagcgttctattaaaagc
catctccaactgtggaccaatgctagccagctaagagattttcaaagtca
ctttatgtcttcccaagctgaggatggtgcttgccaccaaacctgatgaa
tgtcctgtattcaattcctaggatctacaatcccacactgtagaaggaga
gaacagactcttgcaaattgttctctgacctccacacagacacggttgga
ggtggaagtctatcttctctaaggttaagggtgtggctcaggggaggagt
gctatccgaggatgccctgagttctactttcagcagcagtgacgaaagga
gaggggggaggagagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_34724383_34725345
seq2: B6Ng01-006P03.b_98_1055

seq1  TGGGTAGAGAGGAGCCAGCAGACGATGGCTGTATAGAGATCCCAGCACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGAGAGGAGCCAGCAGACGATGGCTGTATAGAGATCCCAGCACAG  50

seq1  CTGGGGGGAGGTCATCTGCTTTACCACTAGATCTCACCCGCTTTCGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGGAGGTCATCTGCTTTACCACTAGATCTCACCCGCTTTCGCTGG  100

seq1  TACAATGAACATCAAACGTACAAAACCGGGGCATGGCAAAAGCTCAGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGAACATCAAACGTACAAAACCGGGGCATGGCAAAAGCTCAGCCC  150

seq1  AAGAAGGTGCCAATGACAACATTCAGGTGTCAAACCAATGGTCATTGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGTGCCAATGACAACATTCAGGTGTCAAACCAATGGTCATTGGTT  200

seq1  CTTTCCTCTATGTCCACTGTCAGGCCAGACCCTGGAAGGGGACCAGTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTCTATGTCCACTGTCAGGCCAGACCCTGGAAGGGGACCAGTTCA  250

seq1  GCAGAGTTGCTCCCCACCCCCACTGCACTCCCCTTATAGAACCCCCATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTTGCTCCCCACCCCCACTGCACTCCCCTTATAGAACCCCCATGT  300

seq1  TTTTCATGGTTGGGTCATAGCAGGCCAGGAGACAGGTGCAGTGGAGCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATGGTTGGGTCATAGCAGGCCAGGAGACAGGTGCAGTGGAGCCAC  350

seq1  AAAAGGTCAGAATCCTGACTCCATCAGCAGGCTCAGAGTCCTCCAGTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTCAGAATCCTGACTCCATCAGCAGGCTCAGAGTCCTCCAGTCAC  400

seq1  ATAGCCAGTGCCAAGGGACCTCAGACATCATGCCCCCAGACAGTATTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCAGTGCCAAGGGACCTCAGACATCATGCCCCCAGACAGTATTCAC  450

seq1  TGTGGCCAGCTCATACCCACCCTTAAGGAAACCTAGCTAGGGCTTGACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCAGCTCATACCCACCCTTAAGGAAACCTAGCTAGGGCTTGACTC  500

seq1  AGAGTCCTTCAGGACTTAGCTTCCCCCAGCTGAAATGCAGCCCAACCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCCTTCAGGACTTAGCTTCCCCCAGCTGAAATGCAGCCCAACCCTG  550

seq1  GCTACATTTTTATCCATGCTAAAAGTCAGCCATATCTTTCATTGAAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATTTTTATCCATGCTAAAAGTCAGCCATATCTTTCATTGAAACAA  600

seq1  AATAAAACAGGGTGCCTGGCTGTGACACAGATGTTCAGGGGGTGGCTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACAGGGTGCCTGGCTGTGACACAGATGTTCAGGGGGTGGCTGGA  650

seq1  GAGACAGCTCAGAGGTCAAGAATGTGTACTGCTCTTGCAACGGGCCCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGCTCAGAGGTCAAGAATGTGTACTGCTCTTGCAACGGGCCCAAG  700

seq1  TTCAATTCCCGGCACTGACATCAGGTCACTCACAAGCACCCACAATGTCA  750
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTCAATTCCCGGCACTGACATCA-GTCACTCACAAGCACCCACAATGTCA  749

seq1  GTGTCTGAATTCACTTGCACACATCCACAAAGAGTCATGCACACATACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGAATTCACTTGCACACATCCACAAAGAGTCATGCACACATACAC  799

seq1  ATGATT-AAAACTACAAAATAAAAACTTTTTTTTTTTTTAAAAAAGATAA  849
      |||||| ||||||||||||||||||| |||||||||||||||||||||||
seq2  ATGATTAAAAACTACAAAATAAAAAC-TTTTTTTTTTTTAAAAAAGATAA  848

seq1  CTAGTAGCCCCTGTTCTGAGGGATTAGACTGG-AAGGGTAGTGGCAGAGT  898
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTAGTAGCCCCTGTTCTGAGGGATTAGACTGGAAAGGGTAGTGGCAGAGT  898

seq1  GTGTCCTTGCAAGGCCAGAGGGACATTCCAGACTGCCTTGTGGCTAGAAG  948
      |||||||||| ||| |||||||||||||||||||| ||||  ||||||| 
seq2  GTGTCCTTGC-AGGGCAGAGGGACATTCCAGACTG-CTTGGTGCTAGAA-  945

seq1  AGGGAGGAGGGAGGG  963
         ||||||||||||
seq2  --AGAGGAGGGAGGG  958

seq1: chr7_127977585_127978158
seq2: B6Ng01-006P03.g_66_639

seq1  GAATTCTTCTGTCCTCTCTTTATCGGGTGGGAAAGGATACGGTACCCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGTCCTCTCTTTATCGGGTGGGAAAGGATACGGTACCCCCA  50

seq1  CCCAACACACAAATCCCTGAAGGATTCCGATGCTACCCTAATTACCAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACACACAAATCCCTGAAGGATTCCGATGCTACCCTAATTACCAGCC  100

seq1  CCTGTGAGATTCACACAGGAAGGGTTGGCTCATTTAAAGAAACTAAAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGAGATTCACACAGGAAGGGTTGGCTCATTTAAAGAAACTAAAGGA  150

seq1  GGAAGCATTGATGCAGATGCAGAAGAAAGGCCACTATAAACCAATGACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCATTGATGCAGATGCAGAAGAAAGGCCACTATAAACCAATGACAT  200

seq1  AGTTTATCCGAATAGGGCAACCAGTGAGACTGGTTTATAAGCGTTCTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATCCGAATAGGGCAACCAGTGAGACTGGTTTATAAGCGTTCTATT  250

seq1  AAAAGCCATCTCCAACTGTGGACCAATGCTAGCCAGCTAAGAGATTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCATCTCCAACTGTGGACCAATGCTAGCCAGCTAAGAGATTTTCA  300

seq1  AAGTCACTTTATGTCTTCCCAAGCTGAGGATGGTGCTTGCCACCAAACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACTTTATGTCTTCCCAAGCTGAGGATGGTGCTTGCCACCAAACCT  350

seq1  GATGAATGTCCTGTATTCAATTCCTAGGATCTACAATCCCACACTGTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATGTCCTGTATTCAATTCCTAGGATCTACAATCCCACACTGTAGA  400

seq1  AGGAGAGAACAGACTCTTGCAAATTGTTCTCTGACCTCCACACAGACACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGAACAGACTCTTGCAAATTGTTCTCTGACCTCCACACAGACACG  450

seq1  GTTGGAGGTGGAAGTCTATCTTCTCTAAGGTTAAGGGTGTGGCTCAGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAGGTGGAAGTCTATCTTCTCTAAGGTTAAGGGTGTGGCTCAGGGG  500

seq1  AGGAGTGCTATCCGAGGATGCCCTGAGTTCTACTTTCAGCAGCAGTGACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGCTATCCGAGGATGCCCTGAGTTCTACTTTCAGCAGCAGTGACG  550

seq1  AAAGGAGAGGGGGGAGGAGAGAGG  574
      ||||||||||||||||||||||||
seq2  AAAGGAGAGGGGGGAGGAGAGAGG  574