BAC Information

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BAC

Clone NameB6Ng01-008H04
Chromosome7 (Build37)
Map Location 50,587,723 - 50,588,843
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503, BC063263, LOC100039449, EG637776, C330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715
Downstream geneSiglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008H04.g
ACCDH844702
length1,112
definitionDH844702|Mus musculus domesticus DNA, BAC clone: B6Ng01-008H04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ttctaggtaagtgtattgcaggtaaatcctagaagtgtgcaggtgaagtg
cctgtggagaacagaggagggcgccagaccccttgggctgcatggaaggc
aattacaaatgcccaatgtagtctggaaaccgaacttgggacgcatggaa
aagcagccaatgctcatgatggctgagccatctctccaggctgtattttc
tgtttctttttactttctgaaataaactctcattttttaactcccaatct
ttctaattctttttacaagaaatgtgagggtttaatttttttattaattt
gttttacatcacatacttaatataattttatattaatttttaatggattt
aaaaatgacatctaggaagccgggcgtggtggcgcacgcctttaatccca
gcactcgggaggcagaggcaggtggatctcttgagttccgagtttgaggc
cagcctggtctacaaagtgagttccaggacagccagggcaatacagagaa
accctatctcgaaaaaaaaaaccaaaaaaaaaaaaaaaaatgacatctag
ggctggagagatggctcagtggttaagagcaccggctgctcttttgaagg
tcatgagttcaaatcccagcaaccacatggtggctcacaaccatccgtaa
tgagatctgatgccttcttctggtgcatctgaagacagctacagtgtact
tagatataataataaaataaatcttttttaaaaaatgacatatatttatc
atatgcctattctctgcacacacatgatgctacttgcatgtggaggtcag
agaaaaacctttttgggtcagcctagggcatcaggatgggtgccaagtgc
ctttactactgaacaaccttcaccagcccctgctgtagtggttttgattc
aaaagccttgggatatttacaagtgtattttcagaatggatactataccc
atttaaaaaagaaggaagaaacagcatgaaactcattcttgtaaatctac
ttctctgtgtgctttcttggtttgatcctatcagcaaacgtgtcaaattg
aactcaagccagtcgtcctcctacacttttccataagaaataccagggta
caaggatctgac
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_50587723_50588843
seq2: B6Ng01-008H04.g_74_1185 (reverse)

seq1  GTCAGATCATTTGTACCCTGCTGTTTTCTTTATGAAAAGTGT-GGAGGAC  49
      ||||||||  |||||||||| |  ||||||   ||||||||| |||||| 
seq2  GTCAGATC-CTTGTACCCTGGT-ATTTCTTATGGAAAAGTGTAGGAGGA-  47

seq1  CGGCTGGCTTTGAGTCACATTTG-CACGTTTGCTGAAGAGATCAAAACAA  98
      || ||||| ||||||   ||||| ||||||||||||   ||||||| |||
seq2  CGACTGGC-TTGAGTTCAATTTGACACGTTTGCTGATAGGATCAAACCAA  96

seq1  AGAAGCAACACAAGAGAAGTAGGTTTTACACAGAATGAGTTTCATGCTGT  148
        |||| |||| ||||||||| | |||||| |||||||||||||||||||
seq2  GAAAGC-ACAC-AGAGAAGTA-GATTTACA-AGAATGAGTTTCATGCTGT  142

seq1  TTCTTTCTTTCTTTTTTTTAAATGTGTATAGTATCCATTCTGAAAATTAC  198
      ||||| ||   | ||||||||||| ||||||||||||||||||||| |||
seq2  TTCTTCCT---TCTTTTTTAAATGGGTATAGTATCCATTCTGAAAA-TAC  188

seq1  ACTTGTAAATATTCCAAGGCTTTTTGAATCAAAACCACTACAGCAGGGGC  248
      |||||||||||| ||||||| |||||||||||||||||||||||||||||
seq2  ACTTGTAAATATCCCAAGGC-TTTTGAATCAAAACCACTACAGCAGGGGC  237

seq1  TGGTG-AGGTTGTTCAGTAGTAAAGGCACTTGGCACCCATCCTGATGCCC  297
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAGGTTGTTCAGTAGTAAAGGCACTTGGCACCCATCCTGATGCCC  287

seq1  TAGGCTGACCCAAAAAGGTTTTTCTCTGACCTCCACATGCAAGTAGCATC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGACCCAAAAAGGTTTTTCTCTGACCTCCACATGCAAGTAGCATC  337

seq1  ATGTGTGTGCAGAGAATAGGCATATGATAAATATATGTCATTTTTTAAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTGCAGAGAATAGGCATATGATAAATATATGTCATTTTTTAAAA  387

seq1  AAGATTTA-TTTATTATTATATCTAAGTACACTGTAGCTGTCTTCAGATG  446
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTATTTTATTATTATATCTAAGTACACTGTAGCTGTCTTCAGATG  437

seq1  CACCAGAAGAAGGCATCAGATCTCATTACGGATGGTTGTGAGCCACCATG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAAGAAGGCATCAGATCTCATTACGGATGGTTGTGAGCCACCATG  487

seq1  TGGTTGCTGGGATTTGAACTCATGACCTTCAAAAGAGCAGCCGGTGCTCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCTGGGATTTGAACTCATGACCTTCAAAAGAGCAGCCGGTGCTCT  537

seq1  TAACCACTGAGCCATCTCTCCAGCCCTAGATGTCATTTTTTTTTTTTTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACTGAGCCATCTCTCCAGCCCTAGATGTCATTTTTTTTTTTTTTT  587

seq1  TTGGTTTTTTTTTTCGAGATAGGGTTTCTCTGTATTGCCCTGGCTGTCCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTTTTTTTCGAGATAGGGTTTCTCTGTATTGCCCTGGCTGTCCT  637

seq1  GGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCGGAACTCAAGAGAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCGGAACTCAAGAGAT  687

seq1  CCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCAC  737

seq1  GCCCGGCTTCCTAGATGTCATTTTTAAATCCATTAAAAATTAATATAAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGCTTCCTAGATGTCATTTTTAAATCCATTAAAAATTAATATAAAA  787

seq1  TTATATTAAGTATGTGATGTAAAACAAATTAATAAAAAAATTAAACCCTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTAAGTATGTGATGTAAAACAAATTAATAAAAAAATTAAACCCTC  837

seq1  ACATTTCTTGTAAAAAGAATTAGAAAGATTGGGAGTTAAAAAATGAGAGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCTTGTAAAAAGAATTAGAAAGATTGGGAGTTAAAAAATGAGAGT  887

seq1  TTATTTCAGAAAGTAAAAAGAAACAGAAAATACAGCCTGGAGAGATGGCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCAGAAAGTAAAAAGAAACAGAAAATACAGCCTGGAGAGATGGCT  937

seq1  CAGCCATCATGAGCATTGGCTGCTTTTCCATGCGTCCCAAGTTCGGTTTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATCATGAGCATTGGCTGCTTTTCCATGCGTCCCAAGTTCGGTTTC  987

seq1  CAGACTACATTGGGCATTTGTAATTGCCTTCCATGCAGCCCAAGGGGTCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTACATTGGGCATTTGTAATTGCCTTCCATGCAGCCCAAGGGGTCT  1037

seq1  GGCGCCCTCCTCTGTTCTCCACAGGCACTTCACCTGCACACTTCTAGGAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCCCTCCTCTGTTCTCCACAGGCACTTCACCTGCACACTTCTAGGAT  1087

seq1  TTACCTGCAATACACTTACCTAGAA  1121
      |||||||||||||||||||||||||
seq2  TTACCTGCAATACACTTACCTAGAA  1112