BAC Information

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BAC

Clone NameB6Ng01-008I07
Chromosome7 (Build37)
Map Location 116,658,141 - 116,686,158
singlet/doubletdoublet
Overlap geneRpl27a, St5
Upstream geneOlfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509, Olfr510, Olfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub, Ric3, Lmo1, Stk33, EG668320, 1700095J03Rik, Trim66
Downstream geneLOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b, Ipo7, AA474408, Zfp143, Wee1, Swap70, EG668368, Sbf2, LOC668246
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008I07.bB6Ng01-008I07.g
ACCDH844747DH844748
length1,111895
definitionDH844747|Mus musculus domesticus DNA, BAC clone: B6Ng01-008I07, 5' end.DH844748|Mus musculus domesticus DNA, BAC clone: B6Ng01-008I07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,658,141 - 116,659,171)(116,685,253 - 116,686,158)
sequence
gaattccaagacagcaagggctacacagagaaaccctgtctcagaaatga
aaagaagaaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaa
ggaaggaaggaagtcctttcacctatggatttccctgcaccctaaatgct
ataatcaaaaacttcttaaagagctgaccaaagctctgagcattgggaag
ttaagatgtaattagaaattgtacataatgttggcatacaaattggttca
acctatctgaaaaaaaaatagcatcataaaatgaatcatacaaatattta
taccctataatccagtaatctctctcctgggattttattctagacaagtt
attggtcaaaagaaaaaaagtccattatacaaaatgctctctgcaccttt
gtctctaacaacaaagaaccaaaacacaaaaacaaaatacacaagatggc
ttagtatgttatagcacatgccgaaggcaaattactcttcagctgtggaa
aataaacctgaagctgagattacagctcagtgatagtgcttacctagaat
gctcaaggtgccaggttcgattcccagcaccacaagaaataaaatgagcc
aatccttattcctgggcaatgatacagaaaatgatgtggggattgggaga
tggctcagtggttagagtcctggctgcgaaagcctgcagacgggagtatg
acccctagcacccacatatttaaaaaaaatccataaacagccgtgtatga
ctgtaatctctgggggatgaacatgggtgaatcctaggcacttgatggcc
aaccaagcctagtcaaaactgtgagagaccttgtctcaagggaataaggc
agagagcaaaagatgacacctagaaacaaactattcttctggcctccatg
tatatacatatatacatgcatactctccgtacacacacacacacacacac
tcacacacacacagattagcatactgtcatcataactctgcatatagcca
attaccgtctaaacatgatctgaaaattgaaataagttgtgagaacaatg
atttgagaatgttatctccttttcagaacttctttcagctgttttggttt
aaaagaattgt
gaattctaacagggaactggtgagagctgaggatgcacagatagcagaag
acagatactgataaaacacttgtagtgagctccctctcatatcctgtccc
ccatgccagctgtccctgaagtccaacagccagtccctgcgcagtgggaa
ctggtcagaaaggaagagccatcgtttgccacgattacccaagaggcata
gccatgatgacatgatgctgttggctcagctgagcctgccatcttcaccc
tccagcctcaatgaggacagcctcagcaccacaagtgagctgctgtccag
ccgcaggtcccgccgcattcccaaggtatccttcccgcattgagcccagg
gcgctaggcagatgggtgggtaggcaaacagctatgctctggcctgcctt
ccttccttccttcctcctctaatctgggctgcttttttagttccccttga
atagattgagggcctcctttccccggtcccttctttaccaataagattgc
actagcccttcccagtactgagggttagagggaaaagactagctgagctg
agactctcttacccagtatgacaggtgaatttgagttcttgttcacagaa
acatctttggccttttcaggacctaaagattcagaccatctcttcctatg
tctcaaaaatcaaagcgctttcagcaatgacttgcacatgtgtccatgtg
cccgctcctcagctctgcacatgctgcgctgcagaacttagctaaatggt
atttttagcttgcaaacaatgcttgggcatattgtgaatttagcttcttc
tgtcaggcccaggtatggccagagaggaaagctagaatcctgttcttgtt
tttatatctagaaactcttgttttcgttgtcaatgactctgggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_116658141_116659171
seq2: B6Ng01-008I07.b_134_1153

seq1  AGGAAGGAAGGAAGGAAGGAAGTCCTTTCACCTATGGATTTCCCTGCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAAGGAAGGAAGGAAGTCCTTTCACCTATGGATTTCCCTGCACC  50

seq1  CTAAATGCTATAATCAAAAACTTCTTAAAGAGCTGACCAAAGCTCTGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGCTATAATCAAAAACTTCTTAAAGAGCTGACCAAAGCTCTGAGC  100

seq1  ATTGGGAAGTTAAGATGTAATTAGAAATTGTACATAATGTTGGCATACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGAAGTTAAGATGTAATTAGAAATTGTACATAATGTTGGCATACAA  150

seq1  ATTGGTTCAACCTATCTGAAAAAAAAATAGCATCATAAAATGAATCATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTCAACCTATCTGAAAAAAAAATAGCATCATAAAATGAATCATAC  200

seq1  AAATATTTATACCCTATAATCCAGTAATCTCTCTCCTGGGATTTTATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTATACCCTATAATCCAGTAATCTCTCTCCTGGGATTTTATTCT  250

seq1  AGACAAGTTATTGGTCAAAAGAAAAAAAGTCCATTATACAAAATGCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGTTATTGGTCAAAAGAAAAAAAGTCCATTATACAAAATGCTCTC  300

seq1  TGCACCTTTGTCTCTAACAACAAAGAACCAAAACACAAAAACAAAATACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCTTTGTCTCTAACAACAAAGAACCAAAACACAAAAACAAAATACA  350

seq1  CAAGATGGCTTAGTATGTTATAGCACATGCCGAAGGCAAATTACTCTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGGCTTAGTATGTTATAGCACATGCCGAAGGCAAATTACTCTTCA  400

seq1  GCTGTGGAAAATAAACCTGAAGCTGAGATTACAGCTCAGTGATAGTGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGAAAATAAACCTGAAGCTGAGATTACAGCTCAGTGATAGTGCTT  450

seq1  ACCTAGAATGCTCAAGGTGCCAGGTTCGATTCCCAGCACCACAAGAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGAATGCTCAAGGTGCCAGGTTCGATTCCCAGCACCACAAGAAATA  500

seq1  AAATGAGCCAATCCTTATTCCTGGGCAATGATACAGAAAATGATGTGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGCCAATCCTTATTCCTGGGCAATGATACAGAAAATGATGTGGGG  550

seq1  ATTGGGAGATGGCTCAGTGGTTAGAGTCCTGGCTGCGAAAGCCTGCAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGAGATGGCTCAGTGGTTAGAGTCCTGGCTGCGAAAGCCTGCAGAC  600

seq1  GGGAGTATGACCCCTAGCACCCACATATTTAAAAAAAATCCATAAACAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTATGACCCCTAGCACCCACATATTTAAAAAAAATCCATAAACAGC  650

seq1  CGTGTATGACTGTAATCTCTGGGGGATGAACATGGGTGAATCCTAGGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTATGACTGTAATCTCTGGGGGATGAACATGGGTGAATCCTAGGCAC  700

seq1  TTGATGGCCAACCAAGCCTAGTCAAAACTGTGAGAGACCTTGTCTCAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGCCAACCAAGCCTAGTCAAAACTGTGAGAGACCTTGTCTCAAGG  750

seq1  GAATAAGGCAGAGAGCAAAAGATGACACCTAGAAACAAACTATTCTTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGGCAGAGAGCAAAAGATGACACCTAGAAACAAACTATTCTTCTG  800

seq1  GCCTCCATGTATATACATATATACATGCATACTCTCCGTACACACACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCATGTATATACATATATACATGCATACTCTCCGTACACACACACA  850

seq1  CACACACACTCACACACACACAGATTAGCATACTGTCATCATTAACTCTG  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CACACACACTCACACACACACAGATTAGCATACTGTCATCA-TAACTCTG  899

seq1  CATATAGCCCATTACCGTCTAAACATGATCTGAAAATTGACATAAAGTTT  950
      ||||||||| |||||||||||||||||||||||||||||| ||||    |
seq2  CATATAGCCAATTACCGTCTAAACATGATCTGAAAATTGAAATAA---GT  946

seq1  TGTGAG-ACTATGATTTGAGATGTTTATCCTCCTTTTTTCAGAACTTCTT  999
      |||||| || |||||||||||   |||| ||||  ||||||||||||| |
seq2  TGTGAGAACAATGATTTGAGAATGTTAT-CTCC--TTTTCAGAACTTC-T  992

seq1  TTCATGCTGTTTTTTTGTTTTAAAAGATTTGT  1031
      |||| ||||   ||||| ||||||||| ||||
seq2  TTCA-GCTG---TTTTGGTTTAAAAGAATTGT  1020

seq1: chr7_116685253_116686158
seq2: B6Ng01-008I07.g_68_962 (reverse)

seq1  GTCCCAAGAGTCATTGAACCAACGGAGACAAAGAGTTTCTCAGATATAAA  50
      ||||| |||||||||||  ||||| | || |||||||||| |||||||||
seq2  GTCCC-AGAGTCATTGA--CAACGAAAAC-AAGAGTTTCT-AGATATAAA  45

seq1  AACAGGAACAAGGATTCTAGCCTTTCCTCTCTGGGCCATAACCTGGGGCC  100
      |||| |||| |||||||||| ||||||||||| |||||| |||| |||||
seq2  AACAAGAAC-AGGATTCTAG-CTTTCCTCTCT-GGCCAT-ACCT-GGGCC  90

seq1  TGACAGGAAGAAGCTAAATTCACAATATGCCCAAGCATTGTTTGCAAGCT  150
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACA-GAAGAAGCTAAATTCACAATATGCCCAAGCATTGTTTGCAAGCT  139

seq1  AAAAATACCATTTAGCTAAGTTCTGCAGCGCAGCATGTGCAGGGCTGAGG  200
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAAAATACCATTTAGCTAAGTTCTGCAGCGCAGCATGTGCAGAGCTGAGG  189

seq1  AGCGGGCACATGGACACATGTGCAAGTCATTGCTGAAAGCGCTTTGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGGCACATGGACACATGTGCAAGTCATTGCTGAAAGCGCTTTGATTT  239

seq1  TTGAGACATAGGAAGAGATGGTCTGAATCTTTAGGTCCCTGAAAGGCCAA  300
      ||||||||||||||||||||||||||||||||||||||   |||||||||
seq2  TTGAGACATAGGAAGAGATGGTCTGAATCTTTAGGTCCTGAAAAGGCCAA  289

seq1  AGATGTTTCTGTGAACAAGAACTCAAATTCACCTGTCATACTGGGTAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTTCTGTGAACAAGAACTCAAATTCACCTGTCATACTGGGTAAGA  339

seq1  GAGTCTCAGCTCAGCTAGTCTTTTCCCTCTAACCCTCAGTACTGGGAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTCAGCTCAGCTAGTCTTTTCCCTCTAACCCTCAGTACTGGGAAGG  389

seq1  GCTAGTGCAATCTTATTGGTAAAGAAGGGACCGGGGAAAGGAGGCCCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTGCAATCTTATTGGTAAAGAAGGGACCGGGGAAAGGAGGCCCTCA  439

seq1  ATCTATTCAAGGGGAACTAAAAAAGCAGCCCAGATTAGAGGAGGAAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTCAAGGGGAACTAAAAAAGCAGCCCAGATTAGAGGAGGAAGGAA  489

seq1  GGAAGGAAGGCAGGCCAGAGCATAGCTGTTTGCCTACCCACCCATCTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAGGCAGGCCAGAGCATAGCTGTTTGCCTACCCACCCATCTGCC  539

seq1  TAGCGCCCTGGGCTCAATGCGGGAAGGATACCTTGGGAATGCGGCGGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGCCCTGGGCTCAATGCGGGAAGGATACCTTGGGAATGCGGCGGGAC  589

seq1  CTGCGGCTGGACAGCAGCTCACTTGTGGTGCTGAGGCTGTCCTCATTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGGCTGGACAGCAGCTCACTTGTGGTGCTGAGGCTGTCCTCATTGAG  639

seq1  GCTGGAGGGTGAAGATGGCAGGCTCAGCTGAGCCAACAGCATCATGTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGGGTGAAGATGGCAGGCTCAGCTGAGCCAACAGCATCATGTCAT  689

seq1  CATGGCTATGCCTCTTGGGTAATCGTGGCAAACGATGGCTCTTCCTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTATGCCTCTTGGGTAATCGTGGCAAACGATGGCTCTTCCTTTCT  739

seq1  GACCAGTTCCCACTGCGCAGGGACTGGCTGTTGGACTTCAGGGACAGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGTTCCCACTGCGCAGGGACTGGCTGTTGGACTTCAGGGACAGCTG  789

seq1  GCATGGGGGACAGGATATGAGAGGGAGCTCACTACAAGTGTTTTATCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGGGACAGGATATGAGAGGGAGCTCACTACAAGTGTTTTATCAGT  839

seq1  ATCTGTCTTCTGCTATCTGTGCATCCTCAGCTCTCACCAGTTCCCTGTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCTTCTGCTATCTGTGCATCCTCAGCTCTCACCAGTTCCCTGTTA  889

seq1  GAATTC  906
      ||||||
seq2  GAATTC  895