BAC Information

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BAC

Clone NameB6Ng01-008N06
Chromosome7 (Build37)
Map Location 9,155,917 - 9,296,082
singlet/doubletdoublet
Overlap geneEG545909, LOC100042039, LOC100042781, LOC665539
Upstream geneLOC100042688, LOC100042695, LOC100041956, LOC100041961, LOC100042703, LOC100041967, LOC100042724, LOC100041977, LOC100041983, LOC100041989, LOC100041998, LOC100042009, LOC100042754, V2r14, EG628128, EG434109, LOC434110, EG628145
Downstream geneLOC100042795, LOC100042060, EG665552, LOC100042790, LOC100042803, LOC665598, LOC100042810, LOC665593, EG665582, EG434113, EG665577, LOC665571, LOC100042083, Gm1961, V2r4, LOC100042848, LOC100042096, LOC100042870, LOC100042105, LOC100042859, LOC100042113, LOC100042120, LOC100042126, LOC100042139
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008N06.bB6Ng01-008N06.g
ACCDH844953DH844954
length1,051907
definitionDH844953|Mus musculus domesticus DNA, BAC clone: B6Ng01-008N06, 5' end.DH844954|Mus musculus domesticus DNA, BAC clone: B6Ng01-008N06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,155,917 - 9,156,966)(9,295,179 - 9,296,082)
sequence
gaattctacataaaaaccctgaaatagattgtccttgccagccaaaacac
aaaaatctggtagtcaaactgtgttggtatcttcttttatcactgattga
acataacacaattcccaaatacaagggacaataagaaaatttttgtgact
cacaaatgctgttcctctagctggaaattaatcttatgtaaactgaatgt
cctcaggccttgggagcataagagttataatacaatcacattgacatttg
atccaaatgagaccaactcattgtttccacttgactattccatctattgt
agacaggatttttgaggtttctgggatgagatcaattctcagttatgctt
gctaatatatttgagtaaatattcctcaaaaactactgatactcctggat
tgctcattcttttccctattttggatttttgtcaacttcctatcattaac
tcagaaaataatcatttttggagttgtgcttcttataacatatttaggaa
gtactacttgaccataaatgagagttagatatcccttatatgtgtccatg
tggcacactgcatggacatataagcctcatttatcacagtatacttaaat
attttatatggagaaacagtgagtaaacagcaagtttatatatatatata
tatatatatatattatttttacctttgtaactgatatatagtagggcttt
ttgtaaaaaaaaatgcaattatattcctaacattcaactggtatactttt
taaaagaggctaaagacaaaaacaaacctagttttattatcagggttaat
tttcaagttgtatatcctaaatctttctttatttctcacatttaaaacat
aattgcatgacctactacagattgtaggaatgaggaattattctttttga
catacattctttcttcagacaattctggagtgagctcttattcctgagct
ttctctacctggaagcatcgcaaaggttcatcaagtcttcttaagtggtg
ttaaggcttgattttactccctattggactttttccctcaagggctcagt
a
gaattctttgccagagatctaatgccaatttaaattctgactctaaatag
ttagttatacactcacaggtagtcaaatggcgaactccacatactggatt
ggagtttttcatcctttctcgttgctaaaatgtcatgagtagtcaggcta
aggatggtatttcatgcctttgcaaaaaaaaaaaaaaaaaaaatacccca
gatatttaaaagctgggttatagagaaatgttgttaaaatttctttctaa
aacctcacagtttatcactgatgactaaatttatataactactatgactg
taaataataatgctgttatttcagtttaccaatgataatgtaaaattgtg
accaagatgaagataactcctatccggagacagaaataatatgctctatg
ttttggaacagcatgaacaaatcttttcttgctgagcttggtataaataa
tgaaacactctgactgacagtcagtcaaggctgtaagattctctcttcca
tcatgcccgacttaattctagatggccttctctattcctccatgaaggta
tctgtcaacttctggtggtagtccctagttgaaagcctatcatatttctg
aatagtaagtatcctggaacaacctagattgacataagcataagtccaac
cacatccattaactttcttaatagctatcaaattcccccaaagagacatg
atgttaagaatttctgtcccatgataactcacacgtggagataagaagct
gtccaggtacttccagaaacttatagataccccccaattgggtcctgtaa
gcagaaacgaacacatactctctttcattacagaaataattagggatagg
gctgtgtttttttttatgtaataaatttggggtaagtattattagttttt
ccatcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_9155917_9156966
seq2: B6Ng01-008N06.b_48_1098

seq1  GAATTCTACATAAAAACCCTGAAATAGATTGTCCTTGCCAGCCAAAACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATAAAAACCCTGAAATAGATTGTCCTTGCCAGCCAAAACAC  50

seq1  AAAAATCTGGTAGTCAAACTGTGTTGGTATCTTCTTTTATCACTGATTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTGGTAGTCAAACTGTGTTGGTATCTTCTTTTATCACTGATTGA  100

seq1  ACATAACACAATTCCCAAATACAAGGGACAATAAGAAAATTTTTGTGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACACAATTCCCAAATACAAGGGACAATAAGAAAATTTTTGTGACT  150

seq1  CACAAATGCTGTTCCTCTAGCTGGAAATTAATCTTATGTAAACTGAATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATGCTGTTCCTCTAGCTGGAAATTAATCTTATGTAAACTGAATGT  200

seq1  CCTCAGGCCTTGGGAGCATAAGAGTTATAATACAATCACATTGACATTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGCCTTGGGAGCATAAGAGTTATAATACAATCACATTGACATTTG  250

seq1  ATCCAAATGAGACCAACTCATTGTTTCCACTTGACTATTCCATCTATTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAATGAGACCAACTCATTGTTTCCACTTGACTATTCCATCTATTGT  300

seq1  AGACAGGATTTTTGAGGTTTCTGGGATGAGATCAATTCTCAGTTATGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGATTTTTGAGGTTTCTGGGATGAGATCAATTCTCAGTTATGCTT  350

seq1  GCTAATATATTTGAGTAAATATTCCTCAAAAACTACTGATACTCCTGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATATATTTGAGTAAATATTCCTCAAAAACTACTGATACTCCTGGAT  400

seq1  TGCTCATTCTTTTCCCTATTTTGGATTTTTGTCAACTTCCTATCATTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATTCTTTTCCCTATTTTGGATTTTTGTCAACTTCCTATCATTAAC  450

seq1  TCAGAAAATAATCATTTTTGGAGTTGTGCTTCTTATAACATATTTAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAATAATCATTTTTGGAGTTGTGCTTCTTATAACATATTTAGGAA  500

seq1  GTACTACTTGACCATAAATGAGAGTTAGATATCCCTTATATGTGTCCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTACTTGACCATAAATGAGAGTTAGATATCCCTTATATGTGTCCATG  550

seq1  TGGCACACTGCATGGACATATAAGCCTCATTTATCACAGTATACTTAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACACTGCATGGACATATAAGCCTCATTTATCACAGTATACTTAAAT  600

seq1  ATTTTATATGGAGAAACAGTGAGTAAACAGCAAGTTTATATATATATATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATATGGAGAAACAGTGAGTAAACAGCAAGTTTATATATATATATA  650

seq1  TATATATATATATTATTTTTACCTTTGTAACTGATATATAGTAGGGC-TT  699
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TATATATATATATTATTTTTACCTTTGTAACTGATATATAGTAGGGCTTT  700

seq1  TTGTAAAAAAAAATGCAATTATATTCCTAACATTCAACTGGTATACTTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAAAAAAATGCAATTATATTCCTAACATTCAACTGGTATACTTTT  750

seq1  TAAAAGAGGCTAAAGACAAAAACAAACCTAGTTTTATTATCAGGGTTAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAGGCTAAAGACAAAAACAAACCTAGTTTTATTATCAGGGTTAAT  800

seq1  TTTCAAGTTGTATATCCTAAATCTTTCTTTATTTCTCACATTTAAAACAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGTTGTATATCCTAAATCTTTCTTTATTTCTCACATTTAAAACAT  850

seq1  AATTGCATGACCTACTACAGGAATGTAGGAATGAGGAATTAT--CTTTTG  897
      ||||||||||||||||||| || |||||||||||||||||||   |||||
seq2  AATTGCATGACCTACTACA-GATTGTAGGAATGAGGAATTATTCTTTTTG  899

seq1  ACATACATTCTTTCTCCAGAC-ATTCT-GAGTGAGCTCTTATT-CTGAGC  944
      ||||||||||||||| ||||| ||||| ||||||||||||||| ||||||
seq2  ACATACATTCTTTCTTCAGACAATTCTGGAGTGAGCTCTTATTCCTGAGC  949

seq1  TTTCTCTACCT-GAAGCATCGCAAAGTTTTCATCAGGTCTTCTTAAGTGG  993
      ||||||||||| ||||||||||||||  ||||||| ||||||||||||||
seq2  TTTCTCTACCTGGAAGCATCGCAAAG-GTTCATCAAGTCTTCTTAAGTGG  998

seq1  TGGTTTATGCTTGATTTTTACTTCCCTATTGGACTTTTTCCCTTCAAGGT  1043
      | ||| | |||||| |||||| |||||||||||||||||||| |||||| 
seq2  T-GTTAAGGCTTGA-TTTTAC-TCCCTATTGGACTTTTTCCC-TCAAGGG  1044

seq1  CTCATTA  1050
      |||| ||
seq2  CTCAGTA  1051

seq1: chr7_9295179_9296082
seq2: B6Ng01-008N06.g_70_976 (reverse)

seq1  GTGATGGAAAAACT-ATAATACCTACACCATATTTATTACAT-AAAAAAA  48
      |||||||||||||| ||||||| ||| ||| ||||||||||| |||||||
seq2  GTGATGGAAAAACTAATAATACTTACCCCAAATTTATTACATAAAAAAAA  50

seq1  ACACAGCCCTATCCCTAATTATTTCTGTAATG-AAGAGAGTATGTGTTCG  97
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACACAGCCCTATCCCTAATTATTTCTGTAATGAAAGAGAGTATGTGTTCG  100

seq1  TTTCTGCTTACAGGACCCAATTGGGGGGTATCTATAAGTTTCTGGAAGTA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCTTACAGGACCCAATTGGGGGGTATCTATAAGTTTCTGGAAGTA  150

seq1  CCTGGACAGCTTCTTATCTCCACGTGTGAGTTATCATGGGACAGAAATTC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGACAGCTTCTTATCTCCACGTGTGAGTTATCATGGGACAGAAATTC  200

seq1  TTAACATCATGTCTCTTTGGGGGAATTTGATAGCTATTAAGAAAGTTAAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATCATGTCTCTTTGGGGGAATTTGATAGCTATTAAGAAAGTTAAT  250

seq1  GGATGTGGTTGGACTTATGCTTATGTCAATCTAGGTTGTTCCAGGATACT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGGTTGGACTTATGCTTATGTCAATCTAGGTTGTTCCAGGATACT  300

seq1  TACTATTCAGAAATATGATAGGCTTTCAACTAGGGACTACCACCAGAAGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTCAGAAATATGATAGGCTTTCAACTAGGGACTACCACCAGAAGT  350

seq1  TGACAGATACCTTCATGGAGGAATAGAGAAGGCCATCTAGAATTAAGTCG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGATACCTTCATGGAGGAATAGAGAAGGCCATCTAGAATTAAGTCG  400

seq1  GGCATGATGGAAGAGAGAATCTTACAGCCTTGACTGACTGTCAGTCAGAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGATGGAAGAGAGAATCTTACAGCCTTGACTGACTGTCAGTCAGAG  450

seq1  TGTTTCATTATTTATACCAAGCTCAGCAAGAAAAGATTTGTTCATGCTGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCATTATTTATACCAAGCTCAGCAAGAAAAGATTTGTTCATGCTGT  500

seq1  TCCAAAACATAGAGCATATTATTTCTGTCTCCGGATAGGAGTTATCTTCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAACATAGAGCATATTATTTCTGTCTCCGGATAGGAGTTATCTTCA  550

seq1  TCTTGGTCACAATTTTACATTATCATTGGTAAACTGAAATAACAGCATTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTCACAATTTTACATTATCATTGGTAAACTGAAATAACAGCATTA  600

seq1  TTATTTACAGTCATAGTAGTTATATAAATTTAGTCATCAGTGATAAACTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTACAGTCATAGTAGTTATATAAATTTAGTCATCAGTGATAAACTG  650

seq1  TGAGGTTTTAGAAAGAAATTTTAACAACATTTCTCTATAACCCAGCTTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTTTAGAAAGAAATTTTAACAACATTTCTCTATAACCCAGCTTTT  700

seq1  AAATATCTGGGGTATTTTTTTTTTTTTTTTTTTTGCAAAGGCATGAAATA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTGGGGTATTTTTTTTTTTTTTTTTTTTGCAAAGGCATGAAATA  750

seq1  CCATCCTTAGCCTGACTACTCATGACATTTTAGCAACGAGAAAGGATGAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTTAGCCTGACTACTCATGACATTTTAGCAACGAGAAAGGATGAA  800

seq1  AAACTCCAATCCAGTATGTGGAGTTCGCCATTTGACTACCTGTGAGTGTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCAATCCAGTATGTGGAGTTCGCCATTTGACTACCTGTGAGTGTA  850

seq1  TAACTAACTATTTAGAGTCAGAATTTAAATTGGCATTAGATCTCTGGCAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAACTATTTAGAGTCAGAATTTAAATTGGCATTAGATCTCTGGCAA  900

seq1  AGAATTC  904
      |||||||
seq2  AGAATTC  907