BAC Information

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BAC

Clone NameB6Ng01-009K04
Chromosome7 (Build37)
Map Location 24,804,122 - 24,805,055
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043083, EG667586, EG667599, LOC100043086, LOC100043665, LOC667616, LOC100043667, LOC667623, LOC100043088, EG628664, Nlrp4e, LOC434261, Nlrp5, LOC100043095, EG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18
Downstream geneV1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19, Cd79a, Arhgef1, EG232974, Rabac1, Atp1a3, Grik5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009K04.bB6Ng01-009K04.g
ACCDH845523DH845524
length1,1971,182
definitionDH845523|Mus musculus domesticus DNA, BAC clone: B6Ng01-009K04, 5' end.DH845524|Mus musculus domesticus DNA, BAC clone: B6Ng01-009K04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttataaccccatgggacaaggaatagttgaacgtgctcatcgc
atttttaaaaattggcttttaaatacaagacaggggcagttgtatccccc
aaagtcaccaaaggcacatcttgcttttgcttcattctaaatttttttgc
aaactgatgttaaaggtcagtctgtagaggattaccactggcatccagtt
acttctagttcttatgccatggtaaaatggcaggacccattaactaatga
atggaagggtccagacccggtcctaatctggggaaggggcttggtgtgtg
ttttttcacaaaaagaagatggagcacgatggctgcctgagagattagtt
cgtcaactggacacagatcctgcatcttctagtaagtatgactctaacct
tgattatggctaaaattcctctttagccaaaaagttaaattaaagcacag
cctccactcccagggaagctgtaagcctttcttcaattctctaagtcacc
tccctcactccaagagctctaagtctagcctgattcttgctagtttgcaa
ttgaatggagtacctggacttccccaaaagaagcttttgtactgtgcctt
tcactgtctagactttgttttcaagcaggtcagtcaacgcccttcagcct
gactacagaggctgtgcatcctcatccccaacagcacgcaggtggcagtt
actaatttttatcaagaattctaagttcatattgtggctttggtctgatt
tgggaataaggtgcgctatgcgggccggttagtcaatgaagggcaacaaa
atcccagatcataccaatctaagacaggggtacatgtcaaaaggcagtgg
ttattgatattacaccacagagccgtgtttgcgtgaagtataacaaacaa
actagctgcatgtaacttccaatagagaattgaatggttcgagaggattt
gagatcctaagacaggcacgcacagccatcataattctcaggcaggacta
tggagcataaataaatttatgcctcagttcagccgtttttaatattaata
acgggacgagatgtagtttccatatcctgagcagcttaggttaacttgac
tttgctgtccctagaagatattctgggtggagctttctttctgagtacct
taatgttctgaccactgctgctgtttcctctcagatactgctacctg
gaattctcccctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggga
aaaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgccggggcccagcaaac
acagaagtggattgctcatatccgctaatgggatggatcatagggcttcc
atggaggagctagagaaagtagccaaggagctaaagggatctgcaaccct
attaggtggaacacatatgagctaaccagtacccggagctcttgacctag
cagctatatataaaagatggcctagtcggcctttcttgcaaagaggccca
ttggacttgcaacttattatgctcagttagggaatattcaaggtccaaaa
ggggaatggtgtgtgggcaggtgacggggtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_24804122_24805055
seq2: B6Ng01-009K04.b_322_1242

seq1  TCTGGGGAAGGGGCTCGGTCTGTGTTTTTTCACAAAAAGAAGACGGAGCA  50
      ||||||||||||||| ||| ||||||||||||||||||||||| ||||||
seq2  TCTGGGGAAGGGGCTTGGTGTGTGTTTTTTCACAAAAAGAAGATGGAGCA  50

seq1  CAATGGCTGCCTGAGAGATTAGTTCGTCAACTGGACACAGATCCTGAATC  100
      | |||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CGATGGCTGCCTGAGAGATTAGTTCGTCAACTGGACACAGATCCTGCATC  100

seq1  TTCTAGTAAGTATGACTCTAACCTTGATTATGGCTAGTAATCCTCTTTAG  150
      ||||||||||||||||||||||||||||||||||||  | ||||||||||
seq2  TTCTAGTAAGTATGACTCTAACCTTGATTATGGCTAAAATTCCTCTTTAG  150

seq1  CCAAAAAGTTAAATTAAAGCACAACCTCCACTCCCAGGGAAGTTGTAAGC  200
      ||||||||||||||||||||||| |||||||||||||||||| |||||||
seq2  CCAAAAAGTTAAATTAAAGCACAGCCTCCACTCCCAGGGAAGCTGTAAGC  200

seq1  CTTTCTGCGATTCTCAAAGTCACCTCCCCCACAATGGGAGCTCTAAGTCT  250
      |||||| | |||||| |||||||||||| |||     |||||||||||||
seq2  CTTTCTTCAATTCTCTAAGTCACCTCCCTCACTCCAAGAGCTCTAAGTCT  250

seq1  AGCCTGATCTTTGCTAATTTGCAATTGAATTGAGTACCTGAACTTCCCCA  300
      ||||||||  |||||| ||||||||||||| ||||||||| |||||||||
seq2  AGCCTGATTCTTGCTAGTTTGCAATTGAATGGAGTACCTGGACTTCCCCA  300

seq1  AAAGAAGCTTTTGTACTGTGCCTTTCACTGTCTAGACTTTGTTTTCAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGCTTTTGTACTGTGCCTTTCACTGTCTAGACTTTGTTTTCAAGC  350

seq1  AGGTCAGTCAATGCCCTTCAGCCTGACTACAGTGGGCATGCATCCCCGCC  400
      ||||||||||| |||||||||||||||||||| ||   ||||||| |  |
seq2  AGGTCAGTCAACGCCCTTCAGCCTGACTACAGAGGCTGTGCATCCTCATC  400

seq1  CCCAACAGCGCACAGGTGGCAGTTATTAATTTTCATC-AGAATTCTAAGT  449
      ||||||||| | ||||||||||||| ||||||| ||| ||||||||||||
seq2  CCCAACAGCACGCAGGTGGCAGTTACTAATTTTTATCAAGAATTCTAAGT  450

seq1  ACATATTGTGGCTTTGGTCTGATTTGGGAATAAGGTGCGCTATGAGGGCC  499
       ||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCATATTGTGGCTTTGGTCTGATTTGGGAATAAGGTGCGCTATGCGGGCC  500

seq1  GGTTAGTCAATGACGGGCAACCAGATCCCAGATCATACCAATCTAAGACA  549
      ||||||||||||| ||||||| | ||||||||||||||||||||||||||
seq2  GGTTAGTCAATGAAGGGCAACAAAATCCCAGATCATACCAATCTAAGACA  550

seq1  GAGGTACATGCCAAAAGGCAGTGGTTGTTGATATTACACCACAGAGCCAT  599
      | |||||||| ||||||||||||||| ||||||||||||||||||||| |
seq2  GGGGTACATGTCAAAAGGCAGTGGTTATTGATATTACACCACAGAGCCGT  600

seq1  GTTTGTGTGAATTATAAC--ACAAACTAGCTGCATGTAACTTCTAATGAC  647
      ||||| ||||| ||||||  ||||||||||||||||||||||| ||| | 
seq2  GTTTGCGTGAAGTATAACAAACAAACTAGCTGCATGTAACTTCCAAT-AG  649

seq1  AGAATTGGATGGTTCGAGAGGATCTGAGATCCTAAGGCAGGCACGGCTGC  697
      ||||||| ||||||||||||||| |||||||||||| ||||||||     
seq2  AGAATTGAATGGTTCGAGAGGATTTGAGATCCTAAGACAGGCACG---CA  696

seq1  CAGCCACCATAATTCCCAGGGAGGACTATGGAGCATAAATAAATGTTATG  747
      |||||| |||||||| |||| ||||||||||||||||||||||| |||||
seq2  CAGCCATCATAATTCTCAGGCAGGACTATGGAGCATAAATAAAT-TTATG  745

seq1  CCTCAGTCCAGCTTTCTTTTAATATTAATAACAGGGAGGAGATGTGGCCT  797
      ||||||| ||||  | |||||||||||||||| |||| ||||||| |  |
seq2  CCTCAGTTCAGCCGT-TTTTAATATTAATAAC-GGGACGAGATGTAG-TT  792

seq1  CCCATAAGCCTGAAGTAAGCTGAGCCAGAACTTGACCTTGCTGCCACTAA  847
       |||| | |||||    |||| ||    |||||||| |||||| | || |
seq2  TCCAT-ATCCTGA--GCAGCTTAG-GTTAACTTGACTTTGCTGTCCCT-A  837

seq1  GGAGATTATCTAGGGTGGAGCCTTCCTCCCTAGATCACTCTATTGTTCT-  896
      | ||||  ||| ||||||||| ||| | |   ||  ||  || |||||| 
seq2  GAAGATATTCT-GGGTGGAGCTTTCTTTC--TGAGTACCTTAATGTTCTG  884

seq1  ACCACTGCCGCTG-TTCCTCTTCAAGATACTGCTACCTG  934
      |||||||| |||| |||||||   |||||||||||||||
seq2  ACCACTGCTGCTGTTTCCTCT--CAGATACTGCTACCTG  921