BAC Information

Click to search

BAC

Clone NameB6Ng01-009M01
Chromosome7 (Build37)
Map Location 149,381,883 - 149,509,326
singlet/doubletdoublet
Overlap geneLOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015
Upstream geneLrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik, Dusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757
Downstream gene6330512M04Rik, Ctsd, Syt8, Tnni2, Lsp1, ENSMUSG00000043795, Tnnt3, Mrpl23, Nctc1, H19, Igf2, Igf2as, Ins2, EG640264, EG624121, Th, Ascl2, Tspan32, R74862, Cd81, Tssc4, Trpm5, Kcnq1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009M01.bB6Ng01-009M01.g
ACCDH845611DH845612
length8031,110
definitionDH845611|Mus musculus domesticus DNA, BAC clone: B6Ng01-009M01, 5' end.DH845612|Mus musculus domesticus DNA, BAC clone: B6Ng01-009M01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,508,533 - 149,509,326)(149,381,883 - 149,382,625)
sequence
gaattctttttgaagaaattcatttgagcagatgggtccttcagtaaaga
acccgtatgaggttctttactcaggtgtgaggatccgagctggatcccca
acacctaggtaagtagactaggtatgactgcacatgcctgtaatctcagc
acacactcaggaaacagaggcaggagggtgctctggggctcaatggccac
cctggctatcttactgaacttcactttcagcaagagactttccttcaaga
caaaatgaagagctttgagaaggagatctgatgttgacctatgacaccac
acacacacacacacacacacacacacacacacacacacacacatatgcct
gtgtatctgtgcagacacgtacacaaaacatctggagctgggactggaat
gtcagtgctcaggagacgaaagcaagaggactgtgaatttgaggcagcct
aggctacacagcaaggcctcgaaataacataacagcgatgtttttttaag
gactgagacttaagagtgtcacttggcagccaagtgacacctgtgcatga
agccctgggttcaacctgcaaaataatatagacaaaagcagaaaccacag
ccagtggcaaaggcctcacaggcagctgcgccttgtgggtaagcagaaag
cgacaaggaaagaatatgtgtctgcttagctttgcaggcactgtagaaaa
gttaaaaacagattaagtcggatggtttataaaatttcttgtggaaagaa
aggaccaggcatgggtttgtgcacactccttaataaggaagcagagggca
gga
gaattcattttaggaaagattgctgctattaatatgcttttcctattatt
attattattaaacatatataataatcactagatattagccctagttatga
aaatgtactgtcatgtagttatgctatatagacaaatagatgacttaagt
ctttttttttttggttttttcgagacagggtttctctgtatagccctggc
tgtcctggaactcactttgtagaccaggctggcctcgaactcagagatcc
gcctgcctctgcctcccaagtgctgggattaaaggcgtgtgccaccacgc
ccggctgatgacttaagtcttaatgatgatcctataagaattcctaaaat
tatatcagtaattattaagctcttttatagtgggactgatattaggtcct
tttctgatattcaaaactgcaatgagaactctgccactcttccatatgtc
accagttaattgctcttaggtagtaactagactttcccctacccagacca
cattccaagaggctgtaaaacaattaaccaaagatcataaaaagggaact
aatgatttattatatgttctaggacagaagataaaatattgactgggttt
atctatacaaaacttcactaataacttagttatggtcttaaaccttcagt
gaacctgtggagctgagacaggtgatggatgtttaggcagataattactc
ctaatagatatgcatgtaaacattctctgttgtaaacttctatttcaatt
tatgatttgattttttgtgtgaacttgtgatgaacgctttaacatgtgat
tatgtatcctgaaagatgtataaagtactgaggacaaagagatgagaaga
agagagaagacatttttttctctttccctacttagaaatttttccccttt
cctcgcttaggatctttttgcttttcccctgagatagctttcataaggaa
actttacaacttggtaataaacactacaatcacttttcaaagtgttcttt
tctcttgtaattctaatagcagctgaaagttagagctcctgctgaagaaa
gcacaaaggcattactacctttgctggtttaaggagaaggtgctaggtcg
aaactgtagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_149508533_149509326
seq2: B6Ng01-009M01.b_46_848 (reverse)

seq1  TCCTG-CCTCTGCTTCCTTATT-ATGAGTGTGCACAA--CCATGCCTGGT  46
      ||||| |||||||||||||||| | ||||||||||||  |||||||||||
seq2  TCCTGCCCTCTGCTTCCTTATTAAGGAGTGTGCACAAACCCATGCCTGGT  50

seq1  CCTT--CTTCCACAAG-AATTTTAT-AACCATCCGACTTAATCTG-TTTT  91
      ||||   ||||||||| |||||||| ||||||||||||||||||| ||||
seq2  CCTTTCTTTCCACAAGAAATTTTATAAACCATCCGACTTAATCTGTTTTT  100

seq1  AACTTTTCTACAGTGCCTGCAAAGCTAAGCAGACACATATTCTTTCCTTG  141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTCTACAGTGCCTGCAAAGCTAAGCAGACACATATTCTTTCCTTG  150

seq1  TCGCTTTCTGCTTACCCACAAGGCGCAGCTGCCTGTGAGGCCTTTGCCAC  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTTTCTGCTTACCCACAAGGCGCAGCTGCCTGTGAGGCCTTTGCCAC  200

seq1  TGGCTGTGGTTTCTGCTTTTGTCTATATTATTTTGCAGGTTGAACCCAGG  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTGGTTTCTGCTTTTGTCTATATTATTTTGCAGGTTGAACCCAGG  250

seq1  GCTTCATGCACAGGTGTCACTTGGCTGCCAAGTGACACTCTTAAGTCTCA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATGCACAGGTGTCACTTGGCTGCCAAGTGACACTCTTAAGTCTCA  300

seq1  GTCCTTAAAAAAACATCGCTGTTATGTTATTTCGAGGCCTTGCTGTGTAG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTAAAAAAACATCGCTGTTATGTTATTTCGAGGCCTTGCTGTGTAG  350

seq1  CCTAGGCTGCCTCAAATTCACAGTCCTCTTGCTTTCGTCTCCTGAGCACT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGCTGCCTCAAATTCACAGTCCTCTTGCTTTCGTCTCCTGAGCACT  400

seq1  GACATTCCAGTCCCAGCTCCAGATGTTTTGTGTACGTGTCTGCACAGATA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCCAGTCCCAGCTCCAGATGTTTTGTGTACGTGTCTGCACAGATA  450

seq1  CACAGGCATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  500

seq1  TGTGTGGTGTCATAGGTCAACATCAGATCTCCTTCTCAAAGCTCTTCATT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGTGTCATAGGTCAACATCAGATCTCCTTCTCAAAGCTCTTCATT  550

seq1  TTGTCTTGAAGGAAAGTCTCTTGCTGAAAGTGAAGTTCAGTAAGATAGCC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTGAAGGAAAGTCTCTTGCTGAAAGTGAAGTTCAGTAAGATAGCC  600

seq1  AGGGTGGCCATTGAGCCCCAGAGCACCCTCCTGCCTCTGTTTCCTGAGTG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGCCATTGAGCCCCAGAGCACCCTCCTGCCTCTGTTTCCTGAGTG  650

seq1  TGTGCTGAGATTACAGGCATGTGCAGTCATACCTAGTCTACTTACCTAGG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGAGATTACAGGCATGTGCAGTCATACCTAGTCTACTTACCTAGG  700

seq1  TGTTGGGGATCCAGCTCGGATCCTCACACCTGAGTAAAGAACCTCATACG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGGATCCAGCTCGGATCCTCACACCTGAGTAAAGAACCTCATACG  750

seq1  GGTTCTTTACTGAAGGACCCAACTGCTCAAATGAATTTCTTCAAAAAGAA  791
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGTTCTTTACTGAAGGACCCATCTGCTCAAATGAATTTCTTCAAAAAGAA  800

seq1  TTC  794
      |||
seq2  TTC  803

seq1: chr7_149381883_149382625
seq2: B6Ng01-009M01.g_440_1176

seq1  TTTATAGTGGGACTGATATTAGGTCCTTTTCTGATATTCAAAACTGCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGTGGGACTGATATTAGGTCCTTTTCTGATATTCAAAACTGCAAT  50

seq1  GAGAACTCTGCCACTCTTCCATATGTCACCAGTTAATTGCTCTTAGGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACTCTGCCACTCTTCCATATGTCACCAGTTAATTGCTCTTAGGTAG  100

seq1  TAACTAGACTTTCCCCTACCCAGACCACATTCCAAGAGGCTGTAAAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAGACTTTCCCCTACCCAGACCACATTCCAAGAGGCTGTAAAACAA  150

seq1  TTAACCAAAGATCATAAAAAGGGAACTAATGATTTATTATATGTTCTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCAAAGATCATAAAAAGGGAACTAATGATTTATTATATGTTCTAGG  200

seq1  ACAGAAGATAAAATATTGACTGGGTTTATCTATACAAAACTTCACTAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGATAAAATATTGACTGGGTTTATCTATACAAAACTTCACTAATA  250

seq1  ACTTAGTTATGGTCTTAAACCTTCAGTGAACCTGTGGAGCTGAGACAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTTATGGTCTTAAACCTTCAGTGAACCTGTGGAGCTGAGACAGGT  300

seq1  GATGGATGTTTAGGCAGATAATTACTCCTAATAGATATGCATGTAAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATGTTTAGGCAGATAATTACTCCTAATAGATATGCATGTAAACAT  350

seq1  TCTCTGTTGTAAACTTCTATTTCAATTTATGATTTGATTTTTTGTGTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTTGTAAACTTCTATTTCAATTTATGATTTGATTTTTTGTGTGAA  400

seq1  CTTGTGATGAACGCTTTAACATGTGATTATGTATCCTGAAAGATGTAT-A  449
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTTGTGATGAACGCTTTAACATGTGATTATGTATCCTGAAAGATGTATAA  450

seq1  AGTACTGAGGACAAAGAGATGAGAAGAAGAGAGAAGACA-TTTTTTCCCT  498
      ||||||||||||||||||||||||||||||||||||||| ||||||| ||
seq2  AGTACTGAGGACAAAGAGATGAGAAGAAGAGAGAAGACATTTTTTTCTCT  500

seq1  TTCCCTACTTAGAA--TTTTTCCCTTTCCTCGCTTAGGATCTTTTTGCTT  546
      ||||||||||||||  |||| |||||||||||||||||||||||||||||
seq2  TTCCCTACTTAGAAATTTTTCCCCTTTCCTCGCTTAGGATCTTTTTGCTT  550

seq1  TTCCCCTGAGATAGCTTTCAT-AGGAAACTTTACAACTTGGTAATAAACA  595
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTCCCCTGAGATAGCTTTCATAAGGAAACTTTACAACTTGGTAATAAACA  600

seq1  CTACAATCACTTTTCAAAGTGTTCCTTTTTCTTCCTGTAATTTCTGATTA  645
      |||||||||||||||||||||||| ||| |||   ||||| |||| | ||
seq2  CTACAATCACTTTTCAAAGTGTTCTTTTCTCT---TGTAA-TTCT-AATA  645

seq1  GCAGGCTGAAAGTTAGAGCTCCTGCTG-AGACAGCACAAAGGCAATTTAC  694
      ||| ||||||||||||||||||||||| ||| ||||||||||||  ||||
seq2  GCA-GCTGAAAGTTAGAGCTCCTGCTGAAGAAAGCACAAAGGCA--TTAC  692

seq1  TTACCCTTTGCT-GTTTTAGGAAGAGGTGCTAAGTGCCAGAAACTGTAGT  743
      |   |||||||| |||| ||||  |||||||| ||    |||||||||||
seq2  T--ACCTTTGCTGGTTTAAGGAGAAGGTGCTAGGT---CGAAACTGTAGT  737