BAC Information

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BAC

Clone NameB6Ng01-010B13
Chromosome7 (Build37)
Map Location 6,660,230 - 6,764,702
singlet/doubletdoublet
Overlap genePeg3, Usp29, LOC627961
Upstream geneLOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1
Downstream geneAurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636, LOC665485, EG625353
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010B13.bB6Ng01-010B13.g
ACCDH845865DH845866
length1,0981,112
definitionDH845865|Mus musculus domesticus DNA, BAC clone: B6Ng01-010B13, 5' end.DH845866|Mus musculus domesticus DNA, BAC clone: B6Ng01-010B13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,660,230 - 6,661,354)(6,763,580 - 6,764,702)
sequence
gaattctggtgtctggcaagggagaggcggtcgttgaagagttgcccgca
cacatcacatttgaagtacttgtcgtctgcctgctccgcaccacctgcac
tggtgctggcccgttcaatgtagccagagcactctccaggagcattggcc
ggctcgaagatgatcacactggcgtgacttttcagatgctcgccaaaggc
tgagctggaagcgaacgtttctgcgcattcatgacagttgtagtatggtt
cttcaacctcaatctcttgatcttctccttcctcttctgggtcttcaatg
tctgcaccatcgggctcatctgcatctccctctggctcttcgacgtcttc
ctcaggctcgtcagctctctcttctgggtcttcgatcccggctccgtctg
gctcgtcagcatcaccgtttggctgttcagcctctccattgggctgctca
gcctcgccatcaggctcagcagcttctccatctggcccttcagcctctcc
attaggctctgcagcctccacctcaggctctgcagcctccacctcgggct
ctgcagcctccacttcgggctcagcagcttctgcatttgacccctggatt
cgcagtacttcttgtgggatgaggacattggcttcgacctcttgggcagt
ggcagctactatttctgacccaccttctcgctcaggatgaaacaccatgc
gctcagcgatgacagtgtcgtctaggaaggactggccgcaatctttgcat
tcgtacagtgggatgtgcttcctgaggggctcggtgagaaaggaggcatg
ggtgtaggagggcccatactcatagggctcatccttgtgaactttggtgt
ggtggtccccgagctgtttggcagtgaagaagcattccccacagatgtgc
actcgaaagctctctctgtttcactcccctgatactcagtgaggctaggc
ttgatgaaatctcatctgaaagctcactctgtcatattcatatctctgtg
cttctcatgtgctcattaggcagaactgtgatgagcttgttccaactgac
ggcatcgaatgctgaccagaacgcagatcctttcacgtgcaatttctc
cctcaatggagcttcccagtcaatctctgttggctcttccaatggcctgg
cttgatggtgctttgttttgctctctgtctctcatcaactcaatacttat
tctttaattttggcttgctatatatttaataagttcactcagatgaaaat
agaaaatattttgtagatcactctctggacttcacctaatccactactga
aatttttatttgtaaactcattgactaccatatttaattaagtctattac
tattgctgttgttagttttttgggggtaggggtctgttcagggtccgatt
actctaagctggcttagaaaagctctatagccaaggatgaccctgaactc
ctgatcctcctgcctccacctcgaagggactgggattacagacactcatc
ttggttaaccctttaaaaagaagttaaaagagagctggaggtatagctca
gttgatagagtacttgcccagtgttcacaaagctccgagttaaatatcca
gtatcaccaggtgtggtgtggtgggggcacacctgtaatcatgtaataac
agcattcagaaagtgggggcaggaagctcaaaagctcaaaatgatcacag
actgtggagtaaattttaggccagacctttttctcaaagagagagagaga
gagaggaacaaatatctaacaaaccccccaaaattataccaccaaaatgc
attcacttacacacattttagactagtgcaatccaacaggaagaacactt
caatcacaaaatcatgccatcagcgcaatcctttgcaactaaagcaatag
gcagcccctgtaacttgtcctctgacctccacatgtgcattatgggagac
aaaaatccttctgcatacacaaaataaattaaattttatctatttaaaat
tttgatacaaaaacccagaaaattaaaaacagaaaccataccctgacttg
atcatagaaattatggcaaccatttcaaatcaagtttgtatacacctcac
cttagtgtatggtgctctgatggagaaccacttctggttcaagcagccat
attcaagtggtcgataggcatggatgggccagggcttactgagtggcagc
tggggaaagcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_6660230_6661354
seq2: B6Ng01-010B13.b_45_1142

seq1  GAATTCTGGTGTCTGGCAAGGGAGAGGCGGTCGTTGAAGAGTTGCCCGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTGTCTGGCAAGGGAGAGGCGGTCGTTGAAGAGTTGCCCGCA  50

seq1  CACATCACATTTGAAGTACTTGTCGTCTGCCTGCTCCGCACCACCTGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCACATTTGAAGTACTTGTCGTCTGCCTGCTCCGCACCACCTGCAC  100

seq1  TGGTGCTGGCCCGTTCAATGTAGCCAGAGCACTCTCCAGGAGCATTGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTGGCCCGTTCAATGTAGCCAGAGCACTCTCCAGGAGCATTGGCC  150

seq1  GGCTCGAAGATGATCACACTGGCGTGACTTTTCAGATGCTCGCCAAAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCGAAGATGATCACACTGGCGTGACTTTTCAGATGCTCGCCAAAGGC  200

seq1  TGAGCTGGAAGCGAACGTTTCTGCGCATTCATGACAGTTGTAGTATGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGGAAGCGAACGTTTCTGCGCATTCATGACAGTTGTAGTATGGTT  250

seq1  CTTCAACCTCAATCTCTTGATCTTCTCCTTCCTCTTCTGGGTCTTCAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACCTCAATCTCTTGATCTTCTCCTTCCTCTTCTGGGTCTTCAATG  300

seq1  TCTGCACCATCGGGCTCATCTGCATCTCCCTCTGGCTCTTCGACGTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACCATCGGGCTCATCTGCATCTCCCTCTGGCTCTTCGACGTCTTC  350

seq1  CTCAGGCTCGTCAGCTCTCTCTTCTGGGTCTTCGATCCCGGCTCCGTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCTCGTCAGCTCTCTCTTCTGGGTCTTCGATCCCGGCTCCGTCTG  400

seq1  GCTCGTCAGCATCACCGTTTGGCTGTTCAGCCTCTCCATTGGGCTGCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGTCAGCATCACCGTTTGGCTGTTCAGCCTCTCCATTGGGCTGCTCA  450

seq1  GCCTCGCCATCAGGCTCAGCAGCTTCTCCATCTGGCCCTTCAGCCTCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGCCATCAGGCTCAGCAGCTTCTCCATCTGGCCCTTCAGCCTCTCC  500

seq1  ATTAGGCTCTGCAGCCTCCACCTCAGGCTCTGCAGCCTCCACCTCGGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGCTCTGCAGCCTCCACCTCAGGCTCTGCAGCCTCCACCTCGGGCT  550

seq1  CTGCAGCCTCCACTTCGGGCTCAGCAGCTTCTGCATTTGACCCCTGGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCCTCCACTTCGGGCTCAGCAGCTTCTGCATTTGACCCCTGGATT  600

seq1  CGCAGTACTTCTTGTGGGATGAGGACATTGGCTTCGACCTCTTGGGCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGTACTTCTTGTGGGATGAGGACATTGGCTTCGACCTCTTGGGCAGT  650

seq1  GGCAGCTACTATTTCTGACCCACCTTCTCGCTCAGGATGAAACACCATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTACTATTTCTGACCCACCTTCTCGCTCAGGATGAAACACCATGC  700

seq1  GCTCAGCGATGACAGTGTCGTCTAGGAAGGACTGGCCGCAATCTTTGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCGATGACAGTGTCGTCTAGGAAGGACTGGCCGCAATCTTTGCAT  750

seq1  TCGTACAGTGGGATGTGCTTCCTGAGGGGCTCGGTGAGAAAGGAGGCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTACAGTGGGATGTGCTTCCTGAGGGGCTCGGTGAGAAAGGAGGCATG  800

seq1  GGTGTAGGAGGGCCCATACTCATAGGGCTCATCCTTGTGAACTTTGGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAGGAGGGCCCATACTCATAGGGCTCATCCTTGTGAACTTTGGTGT  850

seq1  GGTGGTCCCCGAGCTGTTTGGCAGTGAAGAAGCATTCCCCACAGATTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGTGGTCCCCGAGCTGTTTGGCAGTGAAGAAGCATTCCCCACAGA-TGTG  899

seq1  CACTCGAAAAGCTTCTCTTCTGTTTCACTCCCCTGATACTCAGTGAGGGC  950
      |||||| ||||| |||| |||||||||||||||||||||||||||| |||
seq2  CACTCG-AAAGC-TCTC-TCTGTTTCACTCCCCTGATACTCAGTGA-GGC  945

seq1  TAGGCCTTGAATGAAAATCTCATCTGAAAGCTCACTCTGTTCCATTATTT  1000
      |||| |||| ||| ||||||||||||||||||||||||||  |||   ||
seq2  TAGG-CTTG-ATG-AAATCTCATCTGAAAGCTCACTCTGT--CAT--ATT  988

seq1  CATTATCTCTGTGCTGTCTCATGTGCTCATTTAGGGCAGAACTGTGAATG  1050
      || |||||||||||| |||||||||||||||   |||||||||||| |||
seq2  CA-TATCTCTGTGCT-TCTCATGTGCTCATT--AGGCAGAACTGTG-ATG  1033

seq1  AAGCCTTGTCCACACTGACGGCATCGAATGGCTGACCCAGAAACGGCAGG  1100
      |   ||||| |  |||||||||||||||| ||||| ||||||   |||| 
seq2  A--GCTTGTTCCAACTGACGGCATCGAAT-GCTGA-CCAGAA--CGCAG-  1076

seq1  ATTCCTTTCAACAGTGCAATTTCTC  1125
        ||||||||   ||||||||||||
seq2  -ATCCTTTCA--CGTGCAATTTCTC  1098

seq1: chr7_6763580_6764702
seq2: B6Ng01-010B13.g_83_1194 (reverse)

seq1  ATGCTTTCCCCCAGGCTGGCCTTCATGGTAGCCACTGGCCACTCATGGCT  50
      |||||||||||   |||| |  |||  |||  | ||||||  ||   || 
seq2  ATGCTTTCCCC--AGCTGCCACTCA--GTAAGCCCTGGCCCATCCATGCC  46

seq1  TACTGGCCACTTGAATATTGGCTGCTTTGAACAGAAGTGTGTCTCCATCA  100
      ||  | ||||||||||| |||||||||  | ||||||||  |||||||||
seq2  TATCGACCACTTGAATA-TGGCTGCTTGAACCAGAAGTGGTTCTCCATCA  95

seq1  GAGCA-CATACACTAGAGGTTGAGGTGTTATTACAAAACTTGGTTTTGAA  149
      ||||| ||||||||| ||| ||||||||   ||| |||||| | ||||||
seq2  GAGCACCATACACTA-AGG-TGAGGTGT--ATAC-AAACTT-GATTTGAA  139

seq1  ATGGTTGCCATAATTTTCTTATTGATCAAGTCTGTGTATGGTTTCTGTTT  199
      ||||||||||||| |||||   |||||||||| | |||||||||||||||
seq2  ATGGTTGCCATAA-TTTCT--ATGATCAAGTCAGGGTATGGTTTCTGTTT  186

seq1  TTAATTTTCTGTGTTTTTTGTATCAAAAATTTTAAATAGATAAAA-TTAA  248
      ||||||||||| | |||||||||| |||||||||||||||||||| ||||
seq2  TTAATTTTCTG-GGTTTTTGTATC-AAAATTTTAAATAGATAAAATTTAA  234

seq1  TTTATTTTGTGTATGCAGAAGGATTTTTGTCT-CCATAATGCACATGTGG  297
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTATTTTGTGTATGCAGAAGGATTTTTGTCTCCCATAATGCACATGTGG  284

seq1  AGGTCAGAGGACAAGTTACAGGGGCTGCCTATTGCTTTAGTTGC-AAGGA  346
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGGTCAGAGGACAAGTTACAGGGGCTGCCTATTGCTTTAGTTGCAAAGGA  334

seq1  TTGCGCTGATGGCATGATTTTGTGATTGAAGTGTTCTTCCTGTTGGATTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGCTGATGGCATGATTTTGTGATTGAAGTGTTCTTCCTGTTGGATTG  384

seq1  CACTAGTCTAAAATGTGTGTAAGTGAATGCATTTTGGTGGTATAATTTTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGTCTAAAATGTGTGTAAGTGAATGCATTTTGGTGGTATAATTTTG  434

seq1  GGGGGTTTGTTAGATATTTGTTCCTCTCTCTCTCTCTCTCTTTGAG-AAA  495
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGGGGTTTGTTAGATATTTGTTCCTCTCTCTCTCTCTCTCTTTGAGAAAA  484

seq1  AGGTCTGGCCTAAAATTTACTCCACAGTCTGTGATCATTTTGAGCTTTTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGGCCTAAAATTTACTCCACAGTCTGTGATCATTTTGAGCTTTTG  534

seq1  AGCTTCCTGCCCCCACTTTCTGAATGCTGTTATTACATGATTACAGGTGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCTGCCCCCACTTTCTGAATGCTGTTATTACATGATTACAGGTGT  584

seq1  GCCCCCACCACACCACACCTGGTGATACTGGATATTTAACTCGGAGCTTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCACCACACCACACCTGGTGATACTGGATATTTAACTCGGAGCTTT  634

seq1  GTGAACACTGGGCAAGTACTCTATCAACTGAGCTATACCTCCAGCTCTCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACACTGGGCAAGTACTCTATCAACTGAGCTATACCTCCAGCTCTCT  684

seq1  TTTAACTTCTTTTTAAAGGGTTAACCAAGATGAGTGTCTGTAATCCCAGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTTCTTTTTAAAGGGTTAACCAAGATGAGTGTCTGTAATCCCAGT  734

seq1  CCCTTCGAGGTGGAGGCAGGAGGATCAGGAGTTCAGGGTCATCCTTGGCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCGAGGTGGAGGCAGGAGGATCAGGAGTTCAGGGTCATCCTTGGCT  784

seq1  ATAGAGCTTTTCTAAGCCAGCTTAGAGTAATCGGACCCTGAACAGACCCC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGCTTTTCTAAGCCAGCTTAGAGTAATCGGACCCTGAACAGACCCC  834

seq1  TACCCCCAAAAAACTAACAACAGCAATAGTAATAGACTTAATTAAATATG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCCAAAAAACTAACAACAGCAATAGTAATAGACTTAATTAAATATG  884

seq1  GTAGTCAATGAGTTTACAAATAAAAATTTCAGTAGTGGATTAGGTGAAGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCAATGAGTTTACAAATAAAAATTTCAGTAGTGGATTAGGTGAAGT  934

seq1  CCAGAGAGTGATCTACAAAATATTTTCTATTTTCATCTGAGTGAACTTAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAGTGATCTACAAAATATTTTCTATTTTCATCTGAGTGAACTTAT  984

seq1  TAAATATATAGCAAGCCAAAATTAAAGAATAAGTATTGAGTTGATGAGAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATATAGCAAGCCAAAATTAAAGAATAAGTATTGAGTTGATGAGAG  1034

seq1  ACAGAGAGCAAAACAAAGCACCATCAAGCCAGGCCATTGGAAGAGCCAAC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGCAAAACAAAGCACCATCAAGCCAGGCCATTGGAAGAGCCAAC  1084

seq1  AGAGATTGACTGGGAAGCTCCATTGAGG  1123
      ||||||||||||||||||||||||||||
seq2  AGAGATTGACTGGGAAGCTCCATTGAGG  1112