BAC Information

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BAC

Clone NameB6Ng01-010F11
Chromosome7 (Build37)
Map Location 11,403,280 - 11,404,315
singlet/doubletsinglet
Overlap geneLOC637237
Upstream geneVmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217
Downstream geneLOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010F11.bB6Ng01-010F11.g
ACCDH846035DH846036
length1,0361,100
definitionDH846035|Mus musculus domesticus DNA, BAC clone: B6Ng01-010F11, 5' end.DH846036|Mus musculus domesticus DNA, BAC clone: B6Ng01-010F11, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatctcacatggaaggcccagatacaaactgggccttggggttaa
caagcaccttttccaaatacaaacttttcaaatgcacttgcaaattgaaa
gaattgggtgggtggggtgatgaactcagtagataagaacaggtcctttg
tgatcaggaaacctgactttaaatgaaatgaacctgcaaatacctgacca
tgactctggattaatttaacccctgccttgagtgatggagacaagcagat
cctaaaagctggccagacactggcagaaatgactgggtgaggtccaatga
gagaccttgccttaaaggaatatagttaataaagacactgaatgtcatcc
tctgtctttgttagtatgtgtctgtaggcatgtacacacacacagacaca
cacacacacacacacacacatacacaacacaaatagagttttgctttcct
agtctttatcagtgtttgcctttgccagtaggattccatgaaaattagca
accatcccaggaaggaatttccccatgttgatgagctacatttccttggt
tcctcttgagacacacaccatcattatgtacatcttaaatcttcctcaga
caaaaggatagaccattctagagacttgccatacccacggatctacccca
taatcagcctccaaactctgacaccattgcatacaccagcaagattttgc
tgaaaggaccctgatatagctgtctcttgtgaggctatgccaggggacgg
gtaaacacagaagttggaggctcacggtcagctattggatggatcacagg
gcccccaatggaagagctagagaaagtacccaaggagctaaaggagtctg
caaccatataggtagaacaacatatgaactaaccagtacctccagagctc
ttgtctctagctgcttatattttagaagattgcctagtcgccatcattgg
gaagagaggccccttggtcttgcaacttattatcctcagtaatgccgaat
gccagaccaagaatggggatgggggggggggtatgc
gaattctgtacagatggagttactggattttggctggtcagtgggttcac
tttcagttctcttctactgataaattactactaaacaggcagggaggagg
tctgcatgtacaccagtcagagtggctaggattaaaaccacagatcaaaa
catactggagaggatgtggagaaaggggaatgcccctccattcctggtgg
gattgtgaacttgtacaacctctgtccctgtgtgataaggagtcttgccg
gcgaggacacacacacaggacacactcggatacttctgcagcaaagcttt
aatgcatctcgagagaaagatgatcagcttctggggaggagacccagaac
acaggaaactcggtccttaaatagaccacgaagagcggttggagacgtgt
tttgccctgactggttgctcaccatcagcccagatgacgccaccggacag
gcagggcacaaggaatggaaaaataccccagcacatgctcagactacttg
tttaccagttagaaaaccagatgtcagcgccatcttgtaatggcgattgc
aagggcggctcctcacaaacctcctgtaaatcaatctggcaattcctcag
aaaattagaaataattctatctgaagactcagactgctcctggacatata
cccaaaagatgctctaccatataacagggacatatgctccactacgttct
tagcagccttattcataatagccagaaaccagaagcaacccagatgtccc
tcaacagaaaaaaaataagtacagaaaatgtggtttctttacagaatgga
ataacagtaagctattaaaaacaatggcatcatgaattttgcagtcaaat
gggtggaaatagaaatatcatcctgagtgaagttacccagactgggaaag
gacatgcatggtatgtacttaccaatctgtgtatataagccaaaggtaga
taatacccaggatatataccacagaccctatgaagttaacagaaggaagc
ccaagtgaggaggttcatcccactagatgaggagaagtatctggtgagcc
agagggagggttgtttactttcagggagaagagagagagtaagggaaacg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_11403280_11404315
seq2: B6Ng01-010F11.b_44_1078

seq1  GAATTCATCTCACATGGAAGGCCCAGATACAAACTGGGCCTTGGGGTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTCACATGGAAGGCCCAGATACAAACTGGGCCTTGGGGTTAA  50

seq1  CAAGCACCTTTTCCAAATACAAACTTTTCAAATGCACTTGCAAATTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACCTTTTCCAAATACAAACTTTTCAAATGCACTTGCAAATTGAAA  100

seq1  GAATTGGGTGGGTGGGGTGATGAACTCAGTAGATAAGAACAGGTCCTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGGGTGGGTGGGGTGATGAACTCAGTAGATAAGAACAGGTCCTTTG  150

seq1  TGATCAGGAAACCTGACTTTAAATGAAATGAACCTGCAAATACCTGACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAGGAAACCTGACTTTAAATGAAATGAACCTGCAAATACCTGACCA  200

seq1  TGACTCTGGATTAATTTAACCCCTGCCTTGAGTGATGGAGACAAGCAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTGGATTAATTTAACCCCTGCCTTGAGTGATGGAGACAAGCAGAT  250

seq1  CCTAAAAGCTGGCCAGACACTGGCAGAAATGACTGGGTGAGGTCCAATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAAGCTGGCCAGACACTGGCAGAAATGACTGGGTGAGGTCCAATGA  300

seq1  GAGACCTTGCCTTAAAGGAATATAGTTAATAAAGACACTGAATGTCATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTTGCCTTAAAGGAATATAGTTAATAAAGACACTGAATGTCATCC  350

seq1  TCTGTCTTTGTTAGTATGTGTCTGTAGGCATGTACACACACACAGACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTTGTTAGTATGTGTCTGTAGGCATGTACACACACACAGACACA  400

seq1  CACACACACACACACACACATACACAACACAAATAGAGTTTTGCTTTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACATACACAACACAAATAGAGTTTTGCTTTCCT  450

seq1  AGTCTTTATCAGTGTTTGCCTTTGCCAGTAGGATTCCATGAAAATTAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTATCAGTGTTTGCCTTTGCCAGTAGGATTCCATGAAAATTAGCA  500

seq1  ACCATCCCAGGAAGGAATTTCCCCATGTTGATGAGCTACATTTCCTTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCCCAGGAAGGAATTTCCCCATGTTGATGAGCTACATTTCCTTGGT  550

seq1  TCCTCTTGAGACACACACCATCATTATGTACATCTTAAATCTTCCTCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTGAGACACACACCATCATTATGTACATCTTAAATCTTCCTCAGA  600

seq1  CAAAAGGATAGACCA-TCTAGAGAC-TGCCATACCCACGGATCTACCCCA  648
      ||||||||||||||| ||||||||| ||||||||||||||||||||||||
seq2  CAAAAGGATAGACCATTCTAGAGACTTGCCATACCCACGGATCTACCCCA  650

seq1  TAATCAGCCTCCAAACTCTGACACCATTGCATACACCAGCAAGATTTTGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGCCTCCAAACTCTGACACCATTGCATACACCAGCAAGATTTTGC  700

seq1  TGAAAGGACCCTGATATAGCTGTCTCTTGTGAGGCTATGCCA-GGGACGG  747
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGAAAGGACCCTGATATAGCTGTCTCTTGTGAGGCTATGCCAGGGGACGG  750

seq1  GTAAACACAGAAG-TGGAGGCTCACGGTCAGCTATTGGATGGATCACAGG  796
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTAAACACAGAAGTTGGAGGCTCACGGTCAGCTATTGGATGGATCACAGG  800

seq1  GCCCCCAATGGAAGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGAGTCTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCAATGGAAGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGAGTCTG  850

seq1  CAACCATATAGGTAGAACAACAATATGAACTAACCAGTACCTCCAGAGCT  896
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAACCATATAGGTAGAACAAC-ATATGAACTAACCAGTACCTCCAGAGCT  899

seq1  CATGTCTCTAGCTGCATATATATTAGAAGATGGCCTAGTCGGCCATCATT  946
      | ||||||||||||| ||||| ||||||||| |||||||| |||||||||
seq2  CTTGTCTCTAGCTGCTTATATTTTAGAAGATTGCCTAGTC-GCCATCATT  948

seq1  GGGAAGAGAGGCCCCTTGGTCTTGCAAACTTTATATACCTCAGTACAGGC  996
      ||||||||||||||||||||||||| |||||  ||| ||||||||  | |
seq2  GGGAAGAGAGGCCCCTTGGTCTTGC-AACTTATTAT-CCTCAGTAATGCC  996

seq1  GAATGCCAAGACCAAGAAGTGGGAGTGGGGGGGGGGTATG  1036
      ||||||| ||||||||||  ||||  ||||||||||||||
seq2  GAATGCC-AGACCAAGAATGGGGATGGGGGGGGGGGTATG  1035