BAC Information

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BAC

Clone NameB6Ng01-010J16
Chromosome7 (Build37)
Map Location 27,571,326 - 27,746,991
singlet/doubletdoublet
Overlap geneCyp2g1, LOC100043745, Cyp2a5, EG233005, EG330491
Upstream geneAxl, LOC667950, Cyp2s1, LOC100043732, EG623475, Cyp2b10, LOC232993, EG667957, BC026762, Cyp2b13, EG668047, LOC623532, Cyp2b9, LOC667968, Cyp2a4, Nlrp9c, LOC100043195, Nlrp4a, Nlrp9a, V1re12, EG243881, LOC623830, Cyp2b19
Downstream geneCyp2a12, LOC100043199, Cyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010J16.bB6Ng01-010J16.g
ACCDH846226DH846227
length1,004960
definitionDH846226|Mus musculus domesticus DNA, BAC clone: B6Ng01-010J16, 5' end.DH846227|Mus musculus domesticus DNA, BAC clone: B6Ng01-010J16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,571,326 - 27,572,397)(27,746,030 - 27,746,991)
sequence
gaattcagtgagaaggttacctattcagtaacattcaaatttacttctag
tagagagagtgaaactaattaggcattacaaagaactgagccagaatagc
tcagggctagtctgcagagtgattacttaggacagtagccagtctcaccc
aaacacaatggcctagctaataggtgggtttaccatgtaagagttaggga
atcccactgagacaggaatcttcactacagccaggtatagcaagctacat
tgcatattacaagaatttatcaaggcccaggaaatagggggttgtggtat
tgcattgttcatgagaaggtctgctagagcagaaccccctggtgctagct
ttcacaggctcaaaggagtagcacaaattgtgactagggtgtcaaatcct
tagctgtcattaagctgaccctaggcagggctgttttatcttactgtaaa
tattacctggttcctataagtccctttgaagtcattcctttgttttgtgt
caggtaacttcaatgtactttgcctgctgtgacatcctaccccctttatt
ttctgtattatataagactggtgttcactttgtgacaatacattcagatt
ctgcacaatcttgcgtgttgatctgtctgtcatttgcggaccccttgccc
atctgtacccagagacctgtcctacacagacaagggacccaagagggtct
gcagcacagacttcctggtattccagcactgtctttccatcaagatgatt
ctcaagaggaaaggccattaaaatttctcttgtagggaggtatctctgtc
tcatagataatttcttctaaattgaaacattctctcctggagggaagagg
cagattcacaaaatccatgaagtaaatgaaaacgtactgttttctgttga
gatttggtcttttgctattgaattgtaattttaaatactggccccaaagc
tgggttttcctcaaggatgaagagatccacaggaagacaatatgttatct
gccc
gaattcctggaaattcttctaagtcactctcattgaatgtcattctgatg
caattggtaaggtttggaggaaataaaatattttgaggtcatggattttc
atgctgattttgtttctgtaccagaaattagtttgttgcttgggtgtctc
tctctttctccttccttccctccctctctccttctctccctccttcccta
gtccctccctacaccctttgtctaaccctcttctaacccccccctctctc
tctctccacacacacacacacacacacacacacacacacacacatcacta
atttaacttggggacttgagattaagaaatagccacaagtcatggaccct
cagttggcctgctatagcccctggtgaaaagactctgaggaaggcagttg
tagagagcaataggtccagagaccaacaagttgaaggatgcaggtagcag
gaggctcaggttgggcaggaaaatacacaggaaactgttgtttcactctc
tgtggctagaagcacatttcatcaactgagaacaattttcatcaacttga
gtttgagagctctaaacctgaggtccactgttgggttggcctctggagct
ctgtatatgtcattcgagaatgctatagagcctgagaattttgcagatcc
agggtctgctttttacccacggaggtattcctccagaaaggtggctaaca
cataggaggtcttgaaagttctcttccaggatcaatcttagtgctgagat
tgctgctcactctcccacgtactacatccacttggatatacttcttacct
agtcaccacaatttaactggtctcggaggagggaagaggtatgccattct
cacagactgcaaagctaaatgtggccagcagaggccgctattattcaaga
agtcaagctaccaaggggaggtcttcacaggcaagagaggggatgggggt
ggaggatgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_27571326_27572397
seq2: B6Ng01-010J16.b_249_1043

seq1  AGACAGGAATCTTCACTACAGCCAGGTATAGCAAGCTACATTGCATATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGAATCTTCACTACAGCCAGGTATAGCAAGCTACATTGCATATTA  50

seq1  CAAGAATTTATCAAGGCCCAGGAAATAGGGGGTTGTGGTATTGCATTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATTTATCAAGGCCCAGGAAATAGGGGGTTGTGGTATTGCATTGTT  100

seq1  CATGAGAAGGTCTGCTAGAGCAGAACCCCCTGGTGCTAGCTTTCACAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGAAGGTCTGCTAGAGCAGAACCCCCTGGTGCTAGCTTTCACAGGC  150

seq1  TCAAAGGAGTAGCACAAATTGTGACTAGGGTGTCAAATCCTTAGCTGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGAGTAGCACAAATTGTGACTAGGGTGTCAAATCCTTAGCTGTCA  200

seq1  TTAAGCTGACCCTAGGCAGGGCTGTTTTATCTTACTGTAAATATTACCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTGACCCTAGGCAGGGCTGTTTTATCTTACTGTAAATATTACCTG  250

seq1  GTTCCTATAAGTCCCTTTGAAGTCATTCCTTTGTTTTGTGTCAGGTAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTATAAGTCCCTTTGAAGTCATTCCTTTGTTTTGTGTCAGGTAACT  300

seq1  TCAATGTACTTTGCCTGCTGTGACATCCTACCCCCTTTATTTTCTGTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTACTTTGCCTGCTGTGACATCCTACCCCCTTTATTTTCTGTATT  350

seq1  ATATAAGACTGGTGTTCACTTTGTGACAATACATTCAGATTCTGCACAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGACTGGTGTTCACTTTGTGACAATACATTCAGATTCTGCACAAT  400

seq1  CTTGCGTGTTGATCTGTCTGTCATTTGCGGACCCCTTGCCCATCTGTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCGTGTTGATCTGTCTGTCATTTGCGGACCCCTTGCCCATCTGTACC  450

seq1  CAGAGACCTGTCCTACACAGACAAGGGACCCAAGAGGGTCTGCAGCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACCTGTCCTACACAGACAAGGGACCCAAGAGGGTCTGCAGCACAG  500

seq1  ACTTCCTGGTATTCCAGCACTGTCTTTCCATCAGGATGATTCTCAAGAGG  550
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACTTCCTGGTATTCCAGCACTGTCTTTCCATCAAGATGATTCTCAAGAGG  550

seq1  AAAGGCCATTAAAATTTCTCTTGTAGGGAGGTATCTCTGTCTCATAGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCATTAAAATTTCTCTTGTAGGGAGGTATCTCTGTCTCATAGATA  600

seq1  ATTTCTTCTAAATTGAAACATTCTCTCCTGGAGGGAAGAGGCAGATTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTCTAAATTGAAACATTCTCTCCTGGAGGGAAGAGGCAGATTCAC  650

seq1  AAAATCCATGAAGTAAATGAAAACGTACTG-TATCTGTTGAGATTTGGTC  699
      |||||||||||||||||||||||||||||| | |||||||||||||||||
seq2  AAAATCCATGAAGTAAATGAAAACGTACTGTTTTCTGTTGAGATTTGGTC  700

seq1  TTTTGCTA-TGTATTGTAATTTTAAATACTGGCCCCCAAGGCTGGGTTTT  748
      |||||||| || |||||||||||||||||||| |||||| ||||||||||
seq2  TTTTGCTATTGAATTGTAATTTTAAATACTGG-CCCCAAAGCTGGGTTTT  749

seq1  CCTCAAGGATGAGAGA-ATCCACAGGAAGACAATATGTAATCTTGCCCCT  797
      |||||||||||| ||| ||||||||||||||||||||| ||||  ||   
seq2  CCTCAAGGATGA-AGAGATCCACAGGAAGACAATATGTTATCTGCCC---  795

seq1  CAAGTTATCCCTGATTGGTAAATAAAGATGCCTACAGCCTATAGCTAGGC  847
                                                        
seq2  --------------------------------------------------  795

seq1  AGAAGAGAAATAGGTAGGATATTTGGTTTCTGGGCTTGGGGTGGGAAGCA  897
                                                        
seq2  --------------------------------------------------  795

seq1  GGAGTTCATGAAGAAGGAGAGAGAGAAGAAGAGAGAACAAGATAACAAGG  947
                                                        
seq2  --------------------------------------------------  795

seq1  GGTAGGAATCATGAAAACGTGGCCAATTGGAGTTAAGAGCTGACCAGGTG  997
                                                        
seq2  --------------------------------------------------  795

seq1  GAACATGGCAAGTTATAACTTGGGGTTATTGATGGGGAAGTAAGTTCTAA  1047
                                                        
seq2  --------------------------------------------------  795

seq1  TGGCTTAGAGGGTAGATATCTGCCC  1072
                               
seq2  -------------------------  795

seq1: chr7_27746030_27746991
seq2: B6Ng01-010J16.g_65_1024 (reverse)

seq1  CTCATCCTCCA-CCCCATCCCCTCTCCTTGCCTGTGAAGACCTCCCCTTG  49
      ||||||||||| ||||||||||||| ||||||||||||||||||||||||
seq2  CTCATCCTCCACCCCCATCCCCTCT-CTTGCCTGTGAAGACCTCCCCTTG  49

seq1  GTAGCTTGACTTCTTGAATAATAGCGGCCTCTGCTGGCCACATTTAGCTT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTTGACTTCTTGAATAATAGCGGCCTCTGCTGGCCACATTTAGCTT  99

seq1  TGCAGTCTGTGAGAATGGCATACCTTCTTCCCTCCTCCTGAGACCAGTTA  149
      |||||||||||||||||||||||| ||||||||||||| |||||||||||
seq2  TGCAGTCTGTGAGAATGGCATACC-TCTTCCCTCCTCC-GAGACCAGTTA  147

seq1  AATTGTGGTGACTAGGTAAGAAGTATATCCAAGTGGATGTAGTACGTGGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGGTGACTAGGTAAGAAGTATATCCAAGTGGATGTAGTACGTGGG  197

seq1  AGAGTGAGCAGCAATCTCAGCACTAAGATTGATCCTGGAAGAGAACTTTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGCAGCAATCTCAGCACTAAGATTGATCCTGGAAGAGAACTTTC  247

seq1  AAGACCTCCTATGTGTTAGCCACCTTTCTGGAGGAATACCTCCGTGGGTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTCCTATGTGTTAGCCACCTTTCTGGAGGAATACCTCCGTGGGTA  297

seq1  AAAAGCAGACCCTGGATCTGCAAAATTCTCAGGCTCTATAGCATTCTCGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAGACCCTGGATCTGCAAAATTCTCAGGCTCTATAGCATTCTCGA  347

seq1  ATGACATATACAGAGCTCCAGAGGCCAACCCAACAGTGGACCTCAGGTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATATACAGAGCTCCAGAGGCCAACCCAACAGTGGACCTCAGGTTT  397

seq1  AGAGCTCTCAAACTCAAGTTGATGAAAATTGTTCTCAGTTGATGAAATGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCTCAAACTCAAGTTGATGAAAATTGTTCTCAGTTGATGAAATGT  447

seq1  GCTTCTAGCCACAGAGAGTGAAACAACAGTTTCCTGTGTATTTTCCTGCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTAGCCACAGAGAGTGAAACAACAGTTTCCTGTGTATTTTCCTGCC  497

seq1  CAACCTGAGCCTCCTGCTACCTGCATCCTTCAACTTGTTGGTCTCTGGAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGAGCCTCCTGCTACCTGCATCCTTCAACTTGTTGGTCTCTGGAC  547

seq1  CTATTGCTCTCTACAACTGCCTTCCTCAGAGTCTTTTCACCAGGGGCTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGCTCTCTACAACTGCCTTCCTCAGAGTCTTTTCACCAGGGGCTAT  597

seq1  AGCAGGCCAACTGAGGGTCCATGACTTGTGGCTATTTCTTAATCTCAAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCCAACTGAGGGTCCATGACTTGTGGCTATTTCTTAATCTCAAGT  647

seq1  CCCCAAGTTAAATTAGTGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAGTTAAATTAGTGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  697

seq1  GTGTGTGGAGAGAGAGAGAGGGGGGGGTTAGAAGAGGGTTAGACAAAGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGGAGAGAGAGAGAGGGGGGGGTTAGAAGAGGGTTAGACAAAGGG  747

seq1  TGTAGGGAGGGACTAGGGAAGGAGGGAGAGAAGGAGAGAGGGAGGGAAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGAGGGACTAGGGAAGGAGGGAGAGAAGGAGAGAGGGAGGGAAGG  797

seq1  AAGGAGAAAGAGAGAGACACCCAAGCAACAAACTAATTTCTGGTACAGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAAAGAGAGAGACACCCAAGCAACAAACTAATTTCTGGTACAGAA  847

seq1  ACAAAATCAGCATGAAAATCCATGACCTCAAAATATTTTATTTCCTCCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATCAGCATGAAAATCCATGACCTCAAAATATTTTATTTCCTCCAA  897

seq1  ACCTTACCAATTGCATCAGAATGACATTCAATGAGAGTGACTTAGAAGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTACCAATTGCATCAGAATGACATTCAATGAGAGTGACTTAGAAGAA  947

seq1  TTTCCAGGAATTC  962
      |||||||||||||
seq2  TTTCCAGGAATTC  960