BAC Information

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BAC

Clone NameB6Ng01-010N08
Chromosome7 (Build37)
Map Location 13,138,334 - 13,139,414
singlet/doubletsinglet
Overlap gene2900092C05Rik
Upstream geneLOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606
Downstream geneEG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887, V1rj2, 6330408A02Rik, Lig1, Pla2g4c, LOC666225, Cabp5, LOC666232, Gm767, LOC666243
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010N08.bB6Ng01-010N08.g
ACCDH846388DH846389
length1,0281,078
definitionDH846388|Mus musculus domesticus DNA, BAC clone: B6Ng01-010N08, 5' end.DH846389|Mus musculus domesticus DNA, BAC clone: B6Ng01-010N08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcactaaacccatctggtcttggcccttttttggttgggagac
tattaataactgtgtctatttctttagggttatggaactgtttagatggc
ttatgtgatcttgttttaactttggtacctggtatgtgtctagaaaattg
tccatttcatccagattttccaagtttgttgagtataagcttttgtagta
ggatctgattatttttttaaattttcatggtttccattgttatgtcttcc
tttttatttctgattttattaatttggttactttctctgtgccctctggt
tagtctggctaagggcttatctattttgttgattttctcaaagaactagc
tcctggtttggttgaatttttttgtatagttttttttgtttgtttgtttg
tttctctttggttgattttagccctgagtttgattatttcctgccatcta
ctcctcttgggagtatttgattctttttgttctagagctttcaggtgtgc
tgtcaagctgctagtgtaagctctctctgctttcttcttggaggcactta
gagctatgagttttcctcttaccactgtttttattgtgtcccataagttt
tggtatgatgtatcttcatttccgttaaacttaacgtctttattttcttt
ctttctttattctttgaccaagttatcattgagcagggcattgatcatct
ttccatgtgtatgcaggttttccattgttttttgaacacactcacgacaa
ctggaatcttctgcggcaaagcttttattgcttacttatcaggagggaag
accccaaaccgggaaaatggcgctgcttatatagcccgcagcgtgacgtt
tcagcacctgatgtggcgtgacagctcctgattcgttgctcgcccatcac
cccattactatgccgcgagatgggcagtgactaggcgtgagttactctgt
acttaaggcttgttactagtaggtgcagtgaagccagcgcatcttatatg
gcgattgcccttgcatccatgcgattgc
gaattcatatcaatgtttgaaaatattgaattaaaggttgtctttagtct
tgtgtattttttaatcttcttaaaatttgcttcttggaccagtgcctcaa
tcttcctgaatctacatctttacatttaatggaaaacaattttgccatct
cacagcatgtgtctaggatagaggttctcaacctatggatctaaactctc
ttagggtccaaatgacacattcacaggggctttatatcagatatcctaga
tattcaatatttacattatgattcataaaaatagcaacattgcagttatg
aagtagaagtgaaagtaattttatgattgggggtcacctcaacatgagga
actgtattaaatgatcttggcattaagaaggttgaggaccactagtctag
gatgttcgttcttcctgctttttctctatcactgctctttagaatacaat
taagctaatcatcaaagtattctttattacccaagtcacatagaactagg
tacatagtatgctaggagaaagtaaaatactgtcatctatttccacatca
tatggaataatctagttcacagatccacttttagaactggactgacaaag
gggaggcacaacctcaagtgcaaaccttaaggaggtgtttaaaaattcac
tagtcaggatgaacaatattttaatttagtgtcataaaatatcaataccc
aaatagcaatagtttacaaaataatagcatctttctgtgttgctgtgtgt
gatcagaggccaatgtctacttctggtatcattcctcagatgccattcac
cttgtttttttatctctctctgggatttaagactaggttatatgggtggc
aatgggctgcaggaatctgcctgtctctgccttcccagggttgggttgca
cgtatgctccatcacactgactaattgatgtggatcctggggattgaact
ccttagcttgtgtgataatctttttgctgacaacctgtctcttcagcctc
gttaagtacagagtccatgctaagcatgccaagttattagtaaaagaaca
attttgtaacattctatatttatttaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_13138334_13139414
seq2: B6Ng01-010N08.g_67_1144

seq1  GAATTCATATCAATGTTTGAAAATATTGAATTAAAGGTTGTCTTTAGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATCAATGTTTGAAAATATTGAATTAAAGGTTGTCTTTAGTCT  50

seq1  TGTGTATTTTTTAATCTTCTTAAAATTTGCTTCTTGGACCAGTGCCTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATTTTTTAATCTTCTTAAAATTTGCTTCTTGGACCAGTGCCTCAA  100

seq1  TCTTCCTGAATCTACATCTTTACATTTAATGGAAAACAATTTTGCCATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTGAATCTACATCTTTACATTTAATGGAAAACAATTTTGCCATCT  150

seq1  CACAGCATGTGTCTAGGATAGAGGTTCTCAACCTATGGATCTAAACTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCATGTGTCTAGGATAGAGGTTCTCAACCTATGGATCTAAACTCTC  200

seq1  TTAGGGTCCAAATGACACATTCACAGGGGCTTTATATCAGATATCCTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGTCCAAATGACACATTCACAGGGGCTTTATATCAGATATCCTAGA  250

seq1  TATTCAATATTTACATTATGATTCATAAAAATAGCAACATTGCAGTTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAATATTTACATTATGATTCATAAAAATAGCAACATTGCAGTTATG  300

seq1  AAGTAGAAGTGAAAGTAATTTTATGATTGGGGGTCACCTCAACATGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAAGTGAAAGTAATTTTATGATTGGGGGTCACCTCAACATGAGGA  350

seq1  ACTGTATTAAATGATCTTGGCATTAAGAAGGTTGAGGACCACTAGTCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATTAAATGATCTTGGCATTAAGAAGGTTGAGGACCACTAGTCTAG  400

seq1  GATGTTCGTTCTTCCTGCTTTTTCTCTATCACTGCTCTTTAGAATACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCGTTCTTCCTGCTTTTTCTCTATCACTGCTCTTTAGAATACAAT  450

seq1  TAAGCTAATCATCAAAGTATTCTTTATTACCCAAGTCACATAGAACTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTAATCATCAAAGTATTCTTTATTACCCAAGTCACATAGAACTAGG  500

seq1  TACATAGTATGCTAGGAGAAAGTAAAATACTGTCATCTATTTCCACATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGTATGCTAGGAGAAAGTAAAATACTGTCATCTATTTCCACATCA  550

seq1  TATGGAATAATCTAGTTCACAGATCCACTTTTAGAACTGGACTGACAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAATAATCTAGTTCACAGATCCACTTTTAGAACTGGACTGACAAAG  600

seq1  GGGAGGCACAACCTCAAGTGCAAACCTTAAGGAGGTGTTTAAAAATTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCACAACCTCAAGTGCAAACCTTAAGGAGGTGTTTAAAAATTCAC  650

seq1  TAGTCAGGATGAACAATATTTTAATTTAGTGTCATAAAATATCAATACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAGGATGAACAATATTTTAATTTAGTGTCATAAAATATCAATACCC  700

seq1  AAATAGCAATAGTTTACAAAATAATAGCATCTTTCTGTGTTGCTGTGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCAATAGTTTACAAAATAATAGCATCTTTCTGTGTTGCTGTGTGT  750

seq1  GATCAGAGGCCAATGTCTACTTCTGGTATCATTCCTCAGATGCCATTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGAGGCCAATGTCTACTTCTGGTATCATTCCTCAGATGCCATTCAC  800

seq1  CTTGTTTTTTTATCTCTCTCTGGGATTTAAGACTAGGTTATATGGGTGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTTTTATCTCTCTCTGGGATTTAAGACTAGGTTATATGGGTGGC  850

seq1  AATGGGCTGCAGGAATCTGCCTGTCTCTGCCTTCCCAGGGTTGGGTTGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGCTGCAGGAATCTGCCTGTCTCTGCCTTCCCAGGGTTGGGTTGCA  900

seq1  CGTATGCTCCATCACACCTGACT-ATTGATGTGGATCCTGGGGATTGAAC  949
      |||||||||||||||| |||||| ||||||||||||||||||||||||||
seq2  CGTATGCTCCATCACA-CTGACTAATTGATGTGGATCCTGGGGATTGAAC  949

seq1  TCCTTAGGCTTGTGTGATAATCTTTTTGCTGACAAACCTGTCTCTTCAGC  999
      |||||| |||||||||||||||||||||||||| ||||||||||||||||
seq2  TCCTTA-GCTTGTGTGATAATCTTTTTGCTGAC-AACCTGTCTCTTCAGC  997

seq1  CCCGTTAAGTACAGAGTCCATGCTAGGCAATGCCAAGGTATTAGTAAAAG  1049
      | ||||||||||||||||||||||| || |||||||| ||||||||||| 
seq2  CTCGTTAAGTACAGAGTCCATGCTAAGC-ATGCCAAGTTATTAGTAAAA-  1045

seq1  GAACAA-TCTGTAACATCCTATATTTATTTAGA  1081
      |||||| | |||||||| |||||||||||||||
seq2  GAACAATTTTGTAACATTCTATATTTATTTAGA  1078