BAC Information

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BAC

Clone NameB6Ng01-011D24
Chromosome7 (Build37)
Map Location 53,891,996 - 54,041,224
singlet/doubletdoublet
Overlap geneSergef, Tph1, Saal1, Saa3, Saa4, LOC100040106, Saa1, Saa2, Hps5
Upstream geneRasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog, Myod1, Kcnc1
Downstream geneGtf2h1, EG668838, EG384622, Ldha, Ldhc, Tsg101, Uevld, C86187, LOC384623, ENSMUSG00000056509, Spty2d1, LOC100040174, Tmem86a, Ptpn5, LOC100041710, Mrgpra6, EG668725, Gm660, Mrgpra1, LOC668846, LOC100040217, LOC668727, Mrgpra2, LOC638950, Mrgprc4-ps, LOC677457, EG668729, Mrgpra3, Mrgprc1-ps, LOC100040314, Mrgprc3-ps, EG435977, EG619792
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011D24.bB6Ng01-011D24.g
ACCDH846683DH846684
length1,149901
definitionDH846683|Mus musculus domesticus DNA, BAC clone: B6Ng01-011D24, 5' end.DH846684|Mus musculus domesticus DNA, BAC clone: B6Ng01-011D24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,040,066 - 54,041,224)(53,891,996 - 53,892,892)
sequence
gaattctacaataaacaaggccataagtgtgcatttcctggggtacagct
agagttgaattgcagtaatgtagaacttgctacggaaatagcatgtaaga
ttgcccccttccattagctgcagttcagtttgggggatcatggatagcat
aataacttaaaaagttcacacaatttttttgtttagttctaacctacatt
ctacccaacaaatagcgttctctaaaaactgggattcctgagctgggctt
gttggtacatactgtaattcgagtactggaaataatggagataggaggat
ccagagtcaaacttctcattgacaatctagtaagcagcctaataattaaa
cttagaacgtcttatagtgctttgtatatttcaaagctccttctccccac
ccccagcccccaacaggttttgttttttttttcagtgtaaccatttctgg
ctgtcctggactggctttgtggaccaggctggatttgaactcacagagat
ctgcctgcctctacctcccaagtgctgggagcaaaggtgtctgtcaccat
gcccagctatttcagagcattcttacatcatattattacagtaaaacagt
ttgtttacaaaggaaataagtggaagatatatattgactcaccgagggtc
ttagcagactcctgcaagagagcatattaggtcgttctccaagaagaaga
gaccgaattcatgaactgagtgagcgggagcttgcctataatcccagctc
ttgaggacaaaggtggggactagtgggcagagtttgaagctagcctggac
tgcttagtgagaccctgtctgaaacaaaactaaactgagtgcttcccatg
ggccaaacactatatagtagaaatacaattacaaaggagggaaaagaccc
ctgtgtcctgaaaacccacatctaccatttacatagacacagttgccatg
tgtaatgtggtacttctgtgaaaacagagtataagacatggatagttgag
catttctcaaaggaagatgatgcagccccatcatgaaggatttatctgaa
gaccacatttttttcctatgtagatctaatgtgaataaaatacattatca
aacctggctgtctaccaactgactggaacaaggggatgtccaggggagg
gaattcagtaggggtaggagtactatcagaaagaccctgtaaagacagag
gccagtaagtgaaacagtaacatctcagcaacaaaaggtacaaacacaat
agtgaacggacacctgaaagagcctaacgcccacccaaaaggattcttat
ctcttcaagtatctactcccaagctggttcttttggaggtgagtggtaga
accatttaataccgggtttttttgtttgtttgtttgtttgtttgttttga
gggcacataaataggaacacttggtttaaaacaactaccaaaatatgaat
acaaaacacacacttatggaaaccatcccacctcttgggtgcttccagcc
accttgagctgcaggaccccaagatgaagaatgagacttgtggggagcac
aggctaagagggtcttttgaacaatacagttctaacaagtgcatctctgc
acacaggacggccaccttgaagcctcacagctaggagcattcgcatccat
tgtacagatgaggaaactgaggcctggaggctcaagtgatgatccagtta
cacaattggatgagtgagttagaaatccatttcttccattagttcttact
gtatccataagaaaacaggtatgtatagggaaccagcccagagattaagt
cacatgactctagaccagcagttttcaaaatgtgggttgtggacgctttg
gcaaacctctacctccaaaaatagtacattacagttcataactgtagcaa
aattacagtttacgaggaagcaataaaaacaattttatgggttgggggtc
accagggtccacagcatcaggaaggttgagaatcccagctcttgcctatt
gctcacgtacattgccattgctttgtccccttatctcctcctcttggtgt
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_54040066_54041224
seq2: B6Ng01-011D24.b_49_1197 (reverse)

seq1  CCTCCCCTCGAACATTCCCCTTGTTTCAGGTCGTTTGTGTAGACAGGCAT  50
      |||||||| | ||| |||||||||| || |||  ||| |||||||| || 
seq2  CCTCCCCT-GGACA-TCCCCTTGTTCCA-GTCAGTTG-GTAGACAGCCAG  46

seq1  GTTTGTATATGTATTTTTATTCACATGTAGATTCTACATATGGAAAAAAA  100
      |||||   ||||| |||||||||||| |||| |||||||| |||||||||
seq2  GTTTGATAATGTA-TTTTATTCACAT-TAGA-TCTACATA-GGAAAAAAA  92

seq1  TGT-GTCTCCAGATAAATCCTTCATGATGTGGCTGCATCATTCTTCCTTT  149
      ||| |||| |||||||||||||||||||| |||||||||| |||||||||
seq2  TGTGGTCTTCAGATAAATCCTTCATGATGGGGCTGCATCA-TCTTCCTTT  141

seq1  GAGAAATGCTCAACTATCCATGTCTTATACTCTGTTTTCACAGAAAGTAC  199
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAGAAATGCTCAACTATCCATGTCTTATACTCTGTTTTCACAG-AAGTAC  190

seq1  CACATTACACATGGCAACTGTGTCTATGTAAATGGTAGATTGTGGGTTTT  249
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CACATTACACATGGCAACTGTGTCTATGTAAATGGTAGA-TGTGGGTTTT  239

seq1  CAGGACACAGGGGTCTTTTCCCTCCTTTGTAATTGTATTTCTACTATATA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACACAGGGGTCTTTTCCCTCCTTTGTAATTGTATTTCTACTATATA  289

seq1  GTGTTTGGCCCATGGGAAGCACTCAGTTTAGTTTTGTTTCAGACAGGGTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGGCCCATGGGAAGCACTCAGTTTAGTTTTGTTTCAGACAGGGTC  339

seq1  TCACTAAGCAGTCCAGGCTAGCTTCAAACTCTGCCCACTAGTCCCCACCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAAGCAGTCCAGGCTAGCTTCAAACTCTGCCCACTAGTCCCCACCT  389

seq1  TTGTCCTCAAGAGCTGGGATTATAGGCAAGCTCCCGCTCACTCAGTTCAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTCAAGAGCTGGGATTATAGGCAAGCTCCCGCTCACTCAGTTCAT  439

seq1  GAATTCGGTCTCTTCTTCTTGGAGAACGACCTAATATGCTCTCTTGCAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCGGTCTCTTCTTCTTGGAGAACGACCTAATATGCTCTCTTGCAGG  489

seq1  AGTCTGCTAAGACCCTCGGTGAGTCAATATATATCTTCCACTTATTTCCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCTAAGACCCTCGGTGAGTCAATATATATCTTCCACTTATTTCCT  539

seq1  TTGTAAACAAACTGTTTTACTGTAATAATATGATGTAAGAATGCTCTGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAACAAACTGTTTTACTGTAATAATATGATGTAAGAATGCTCTGAA  589

seq1  ATAGCTGGGCATGGTGACAGACACCTTTGCTCCCAGCACTTGGGAGGTAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGGGCATGGTGACAGACACCTTTGCTCCCAGCACTTGGGAGGTAG  639

seq1  AGGCAGGCAGATCTCTGTGAGTTCAAATCCAGCCTGGTCCACAAAGCCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGCAGATCTCTGTGAGTTCAAATCCAGCCTGGTCCACAAAGCCAG  689

seq1  TCCAGGACAGCCAGAAATGGTTACACTGAAAAAAAAAACAAAACCTGTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGACAGCCAGAAATGGTTACACTGAAAAAAAAAACAAAACCTGTTG  739

seq1  GGGGCTGGGGGTGGGGAGAAGGAGCTTTGAAATATACAAAGCACTATAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGGGGGTGGGGAGAAGGAGCTTTGAAATATACAAAGCACTATAAG  789

seq1  ACGTTCTAAGTTTAATTATTAGGCTGCTTACTAGATTGTCAATGAGAAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTCTAAGTTTAATTATTAGGCTGCTTACTAGATTGTCAATGAGAAGT  839

seq1  TTGACTCTGGATCCTCCTATCTCCATTATTTCCAGTACTCGAATTACAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCTGGATCCTCCTATCTCCATTATTTCCAGTACTCGAATTACAGT  889

seq1  ATGTACCAACAAGCCCAGCTCAGGAATCCCAGTTTTTAGAGAACGCTATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACCAACAAGCCCAGCTCAGGAATCCCAGTTTTTAGAGAACGCTATT  939

seq1  TGTTGGGTAGAATGTAGGTTAGAACTAAACAAAAAAATTGTGTGAACTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGTAGAATGTAGGTTAGAACTAAACAAAAAAATTGTGTGAACTTT  989

seq1  TTAAGTTATTATGCTATCCATGATCCCCCAAACTGAACTGCAGCTAATGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTATTATGCTATCCATGATCCCCCAAACTGAACTGCAGCTAATGG  1039

seq1  AAGGGGGCAATCTTACATGCTATTTCCGTAGCAAGTTCTACATTACTGCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGCAATCTTACATGCTATTTCCGTAGCAAGTTCTACATTACTGCA  1089

seq1  ATTCAACTCTAGCTGTACCCCAGGAAATGCACACTTATGGCCTTGTTTAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACTCTAGCTGTACCCCAGGAAATGCACACTTATGGCCTTGTTTAT  1139

seq1  TGTAGAATTC  1159
      ||||||||||
seq2  TGTAGAATTC  1149

seq1: chr7_53891996_53892892
seq2: B6Ng01-011D24.g_67_967

seq1  GAATTCAGTAGGGGTAGGAGTACTATCAGAAAGACCCTGTAAAGACAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAGGGGTAGGAGTACTATCAGAAAGACCCTGTAAAGACAGAG  50

seq1  GCCAGTAAGTGAAACAGTAACATCTCAGCAACAAAAGGTACAAACACAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTAAGTGAAACAGTAACATCTCAGCAACAAAAGGTACAAACACAAT  100

seq1  AGTGAACGGACACCTGAAAGAGCCTAACGCCCACCCAAAAGGATTCTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAACGGACACCTGAAAGAGCCTAACGCCCACCCAAAAGGATTCTTAT  150

seq1  CTCTTCAAGTATCTACTCCCAAGCTGGTTCTTTTGGAGGTGAGTGGTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAAGTATCTACTCCCAAGCTGGTTCTTTTGGAGGTGAGTGGTAGA  200

seq1  ACCATTTAATACCGGGTTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTAATACCGGGTTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTTGA  250

seq1  GGGCACATAAATAGGAACACTTGGTTTAAAACAACTACCAAAATATGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACATAAATAGGAACACTTGGTTTAAAACAACTACCAAAATATGAAT  300

seq1  ACAAAACACACACTTATGGAAACCATCCCACCTCTTGGGTGCTTCCAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACACACACTTATGGAAACCATCCCACCTCTTGGGTGCTTCCAGCC  350

seq1  ACCTTGAGCTGCAGGACCCCAAGATGAAGAATGAGACTTGTGGGGAGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGAGCTGCAGGACCCCAAGATGAAGAATGAGACTTGTGGGGAGCAC  400

seq1  AGGCTAAGAGGGTCTTTTGAACAATACAGTTCTAACAAGTGCATCTCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAAGAGGGTCTTTTGAACAATACAGTTCTAACAAGTGCATCTCTGC  450

seq1  ACACAGGACGGCCACCTTGAAGCCTCACAGCTAGGAGCATTCGCATCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGACGGCCACCTTGAAGCCTCACAGCTAGGAGCATTCGCATCCAT  500

seq1  TGTACAGATGAGGAAACTGAGGCCTGGAGGCTCAAGTGATGATCCAGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGATGAGGAAACTGAGGCCTGGAGGCTCAAGTGATGATCCAGTTA  550

seq1  CACAATTGGATGAGTGAGTTAGAAATCCATTTCTTCCATTAGTTCTTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTGGATGAGTGAGTTAGAAATCCATTTCTTCCATTAGTTCTTACT  600

seq1  GTATCCATAAGAAAACAGGTATGTATAGGGAACCAGCCCAGAGATTAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCATAAGAAAACAGGTATGTATAGGGAACCAGCCCAGAGATTAAGT  650

seq1  CACATGACTCTAGACCAGCAGTTTTCAAAATGTGGGTTGTGGACGCTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGACTCTAGACCAGCAGTTTTCAAAATGTGGGTTGTGGACGCTTTG  700

seq1  GCAAACCTCTACCTCCAAAAATAGTACATTACAGTTCATAACTGTAGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACCTCTACCTCCAAAAATAGTACATTACAGTTCATAACTGTAGCAA  750

seq1  AATTACAG-TTACGAGGAAGCAATAAAAACAATTTTAT-GGTTGGGGGTC  798
      |||||||| ||||||||||||||||||||||||||||| |||||||||||
seq2  AATTACAGTTTACGAGGAAGCAATAAAAACAATTTTATGGGTTGGGGGTC  800

seq1  ACCAGGGT-CACAGCATCAGGAAGGTTGAGAATCCCAGCTCTTGCCTATT  847
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGTCCACAGCATCAGGAAGGTTGAGAATCCCAGCTCTTGCCTATT  850

seq1  GCTCACGTACATTGCCATTGCTTTGTCCCCTT-TCTCCTCCTCTTTGTGT  896
      |||||||||||||||||||||||||||||||| |||||||||||| ||||
seq2  GCTCACGTACATTGCCATTGCTTTGTCCCCTTATCTCCTCCTCTTGGTGT  900

seq1  C  897
      |
seq2  C  901