BAC Information

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BAC

Clone NameB6Ng01-011O01
Chromosome7 (Build37)
Map Location 64,052,896 - 64,198,314
singlet/doubletdoublet
Overlap geneGabrg3
Upstream geneTubgcp5, Cyfip1, Nipa2, Nipa1, LOC672959, Herc2, p, LOC100040839
Downstream geneGabra5, Gabrb3, EG668807, LOC434189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011O01.bB6Ng01-011O01.g
ACCDH847137DH847138
length8361,062
definitionDH847137|Mus musculus domesticus DNA, BAC clone: B6Ng01-011O01, 5' end.DH847138|Mus musculus domesticus DNA, BAC clone: B6Ng01-011O01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,197,775 - 64,198,314)(64,052,896 - 64,053,765)
sequence
gaattctcaaaaagcaaaagtgaatctaccacatgtccacctataccttt
ctttgaaacacgcccaaaggacttgacttctgactctacagatacttgct
cattcatgtttatggatgttctactcacactagctaggaaatacacacta
cctaaatgtcctactgctgatgaattgataatgaaaatatggtacatgta
cactgtgaatagtattcagtaggaagaaaaactgaatcataatattagca
tgtaaagggtagaattagtaaagataatattgtatggtattagtaatcca
gaatgatagcatcacatgttctctttcatctgacgctcctagttccatat
tgccagagagtttgtgaaactagagcctggtggaattgtagaaactagga
atgtaaaagtcggcattgccagtgtgggacagtggaagagcaattgagag
gtggaaagcagaatacaagttacctggtggggtaataggaaaaatgtggg
gttttaattacggagtgatagtgtcatagtttagatgagaatgcccacat
aggctcgtgtatttcaaatctttgctttccagttgggggaaactgggaag
aattagatggtgtggccaaatgttgtgttctgttaataaaaatgcataca
ataattgcaacaacaacaaaaagaggtgcacctcataggaagaagtcttg
gtggcccttgcttctttccttccttagtgtgcagaagctatctggcctga
ggcatacccatcattgcaaaggtgatacctaaaggtgtcaggccaaggtg
acccaaacccagtaaaaactgaaagaaatttggtta
gaattcacttattccagatgaaaaatgagctctaatctttattatataaa
gaaagaaaatgcttctacccttttattaataaatgaagtaaacccaagtc
tgtaagcaaaacagcttcatcttctttagtaagactcagcctgccttgct
attaaggaaagaccgatccctcccttcttaaaaagaagctgacctgctct
ttccagtctctctgcagcttctttgtctctcttcatctctattatatttt
gctatgttctatagtctctcttctgccatcaaattctctttctttattct
gtgttatgctttctccttctgtcctgcctaatgtcatcatttctaggtct
ttgtagatttttaaggagaatagaccacatagtttttacaaaaattcact
aaaagtcgcaacataaattcacatcataaaatgaataagaagtttacaat
agagatatttacatgtgtttccattaagactagttatctagctaggcact
gattatctgtcactacctccatatggtcattgagaggctaaaactatatt
tttgtgtctaagtttgcattgaagctttatatagataaacctaatcaata
ttatatcttccattctttcacctacaataaatcattcattccctcttatg
atctttggctaatttttttacagctcttaagaatgtattttaagttgtaa
atgcctgcccttttattaaacttttattttgggagattttattttatttt
tttaaataccacattgccttgtttggtctttttttggtacactttttatt
gtctattttatttatttacatttcaaatcctatacccttactgggtttcc
cctccagataccccctatcccattcgtccccccccccccgctgctgtgag
gtgctcatgcacccacccacccatttcccacctttccttccctgatattc
cctacactgggcattgaaccttcctaggaccaagggctcttccttctatt
gatgtctgacaggcatctctactacatatatggctagagccatgttccct
tcagtgtacact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_64197775_64198314
seq2: B6Ng01-011O01.b_341_883 (reverse)

seq1  TAACCAAATTTCTTTCAGTTTTTACT-GGTTTGGGTCACCTTGGCCTGAC  49
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TAACCAAATTTCTTTCAGTTTTTACTGGGTTTGGGTCACCTTGGCCTGAC  50

seq1  ACC-TTAGGTATCACCTTTGCAATGATGGGTATGCCTCAGGCCAGATAGC  98
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTAGGTATCACCTTTGCAATGATGGGTATGCCTCAGGCCAGATAGC  100

seq1  TTCTGCACACTAAGGAAGGAAAGAAGCAAGGGCCACCAAGACTTCTTCCT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCACACTAAGGAAGGAAAGAAGCAAGGGCCACCAAGACTTCTTCCT  150

seq1  ATGAGGTGCACCTC-TTTTGTTGTTGTTGCAATTATTGTATGCATTTTTA  197
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATGAGGTGCACCTCTTTTTGTTGTTGTTGCAATTATTGTATGCATTTTTA  200

seq1  TTAACAGAACACAACATTTGGCCACACCATCTAATTCTTCCCAGTTTCCC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGAACACAACATTTGGCCACACCATCTAATTCTTCCCAGTTTCCC  250

seq1  CCAACTGGAAAGCAAAGATTTGAAATACACGAGCCTATGTGGGCATTCTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTGGAAAGCAAAGATTTGAAATACACGAGCCTATGTGGGCATTCTC  300

seq1  ATCTAAACTATGACACTATCACTCCGTAATTAAAACCCCACATTTTTCCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAACTATGACACTATCACTCCGTAATTAAAACCCCACATTTTTCCT  350

seq1  ATTACCCCACCAGGTAACTTGTATTCTGCTTTCCACCTCTCAATTGCTCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCCCACCAGGTAACTTGTATTCTGCTTTCCACCTCTCAATTGCTCT  400

seq1  TCCACTGTCCCACACTGGCAATGCCGACTTTTACATTCCTAGTTTCTACA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGTCCCACACTGGCAATGCCGACTTTTACATTCCTAGTTTCTACA  450

seq1  ATTCCACCAGGCTCTAGTTTCACAAACTCTCTGGCAATATGGAACTAGGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCACCAGGCTCTAGTTTCACAAACTCTCTGGCAATATGGAACTAGGA  500

seq1  GCGTCAGATGAAAGAGAACATGTGATGCTATCATTCTGGATTA  540
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCAGATGAAAGAGAACATGTGATGCTATCATTCTGGATTA  543

seq1: chr7_64052896_64053765
seq2: B6Ng01-011O01.g_262_1126

seq1  TCTTTCCAGTCTCTCTGCAGCTTCTTTGTCTCTCTTCATCTCTATTATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCAGTCTCTCTGCAGCTTCTTTGTCTCTCTTCATCTCTATTATAT  50

seq1  TTTGCTATGTTCTATAGTCTCTCTTCTGCCATCAAATTCTCTTTCTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTATGTTCTATAGTCTCTCTTCTGCCATCAAATTCTCTTTCTTTAT  100

seq1  TCTGTGTTATGCTTTCTCCTTCTGTCCTGCCTAATGTCATCATTTCTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTTATGCTTTCTCCTTCTGTCCTGCCTAATGTCATCATTTCTAGG  150

seq1  TCTTTGTAGATTTTTAAGGAGAATAGACCACATAGTTTTTACAAAAATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTAGATTTTTAAGGAGAATAGACCACATAGTTTTTACAAAAATTC  200

seq1  ACTAAAAGTCGCAACATAAATTCACATCATAAAATGAATAAGAAGTTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAGTCGCAACATAAATTCACATCATAAAATGAATAAGAAGTTTAC  250

seq1  AATAGAGATATTTACATGTGTTTCCATTAAGACTAGTTATCTAGCTAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGATATTTACATGTGTTTCCATTAAGACTAGTTATCTAGCTAGGC  300

seq1  ACTGATTATCTGTCACTACCTCCATATGGTCATTGAGAGGCTAAAACTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTATCTGTCACTACCTCCATATGGTCATTGAGAGGCTAAAACTAT  350

seq1  ATTTTTGTGTCTAAGTTTGCATTGAAGCTTTATATAGATAAACCTAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTGTCTAAGTTTGCATTGAAGCTTTATATAGATAAACCTAATCA  400

seq1  ATATTATATCTTCCATTCTTTCACCTACAATAAATCATTCATTCCCTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATATCTTCCATTCTTTCACCTACAATAAATCATTCATTCCCTCTT  450

seq1  ATGATCTTTGGCTAATTTTTTTACAGCTCTTAAGAATGTATTTTAAGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTTTGGCTAATTTTTTTACAGCTCTTAAGAATGTATTTTAAGTTG  500

seq1  TAAATGCCTGCCCTTTTATTAAACTTTTATTTTGGGAGATTTTATTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCCTGCCCTTTTATTAAACTTTTATTTTGGGAGATTTTATTTTAT  550

seq1  TTTTTTAAATACCACATTGCCTTGTTTGGTCTTTTTTTGGTACACTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAATACCACATTGCCTTGTTTGGTCTTTTTTTGGTACACTTTTT  600

seq1  ATTGTCTATTTTATTTATTTACATTTCAAATCCTATACCCTTACTGGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTATTTTATTTATTTACATTTCAAATCCTATACCCTTACTGGGTT  650

seq1  TCCCCTCCAGATACCCCCTATCCCATTCGT-CCCCCCCCCCCGCTGCTGT  699
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCCCCTCCAGATACCCCCTATCCCATTCGTCCCCCCCCCCCCGCTGCTGT  700

seq1  GAAGGTGCTCATGCACCCACCCACCCA-TTCCCACC-TTCCCTCCCTGAT  747
      | ||||||||||||||||||||||||| |||||||| |||| ||||||||
seq2  G-AGGTGCTCATGCACCCACCCACCCATTTCCCACCTTTCCTTCCCTGAT  749

seq1  ATTCCCCTACACTGGGGCATTGAACCTTCCTAGGACCAAGGGCCTCTCCT  797
      ||| ||||||||| |||||||||||||||||||||||||||||   ||||
seq2  ATT-CCCTACACT-GGGCATTGAACCTTCCTAGGACCAAGGGCTCTTCCT  797

seq1  CCTATTGATGTCTGACAAGGCCATCCTCTACTACATATATGGCTAGAGCC  847
       ||||||||||||||||  | ||| |||||||||||||||||||||||||
seq2  TCTATTGATGTCTGACA--GGCAT-CTCTACTACATATATGGCTAGAGCC  844

seq1  ATGGTTCCCTTCATGTGTACACT  870
      || |||||||||| |||||||||
seq2  AT-GTTCCCTTCA-GTGTACACT  865