BAC Information

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BAC

Clone NameB6Ng01-012C02
Chromosome7 (Build37)
Map Location 125,893,610 - 126,056,579
singlet/doubletdoublet
Overlap gene9030624J02Rik, 2310008H09Rik, Iqck
Upstream geneLOC669758, Rps15a, Arl6ip1, 2610207I05Rik, LOC100043339, Syt17, LOC100042845, E030018N11Rik, Coq7, Tmc7, B230311B06Rik, Tmc5, Mir16, 6330503K22Rik
Downstream geneGprc5b, Gpr139, LOC100042871, Gp2, Umod, 1700007B13Rik, C730027J19Rik, Acsm2, Acsm1, BC048390, Thumpd1, EG434233, Acsm3, Exod1, 2610020H08Rik, Dcun1d3, LOC100043399, LOC100043396, Lyrm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012C02.bB6Ng01-012C02.g
ACCDH847304DH847305
length1,0411,137
definitionDH847304|Mus musculus domesticus DNA, BAC clone: B6Ng01-012C02, 5' end.DH847305|Mus musculus domesticus DNA, BAC clone: B6Ng01-012C02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,893,610 - 125,894,655)(126,055,392 - 126,056,579)
sequence
gaattccacataccatagaccaggctagccttgagctcacagacatctac
ctgccttacatacaagggattcctctttgcgcatctgctgtgaatacgca
ggcagagcaagcctcaggacagcacaggagactttttttgttgttctttc
tttttttttttggtttttcgagacagggtttctctgtgcagccctggctg
tcctggaactcactctgtagaccaggctggcctcgaactcagaaatccgc
ctgcctctgcctcccaagtgctgggattaaagacagtgctaacatgccca
gctttttcaccttgccttttgagacagggtctcactgaacgttcagctca
ctgattcagctaggccggctgactgtcaggccagctccagggatcctgtc
tcaggtgctcatgcctgtgtatcaaacatgtttctgacaggcgtcttctc
taacacttggcccattcctttgccctagagcagtggctctcagtcttcct
aaggctgcgaccctttaatacagctcctcacgttgtggttgaccccttcc
caccagaaagttattttttttgttgctacttcataactgtaattttgcta
caattatgactcataatgtaactaatgcctgtgttttccaatggtattaa
gggaccctgtggatgtggacttctcgttgagaactgctgccttagagctt
tgtccctggggaaaaaaaaggcccatgtgctcagtcttaccagcctttgg
tccctgaacattttggggggtcagatgttcagttctcctcagctaccata
gcaagttcaaggccagcctgtactatgtgatttcctatttaaaaaaataa
aataataaaaatacacacacacacacacacacacacacacacacacacac
acacacacacacactctaagtgatagtatttgttgtagatatagaatcat
tatgaatggatgaatgggtgcaagtcaaaccaagctaaaatagcaaatta
tttggatgtttgaatatgaaatgttctttatgagtcatagt
gaattcattcaaggacactgactacttcctacctagaatgcaagctgtcc
agaagagtgaccagagaagggaagagcagctaacgtggaagtagggagtc
tagcagctgttggataacaaacagaagagaacatggccatttgcttagga
gttaaaaaaaaaaaatagggaagggaagccttaatcacaaagcacactcc
tcccttgaccttacagtgacaatgtaggagcttgccatctatcctgattt
cctcagcaaagtcctacctgaggaaagtcctacctgaggaaagtcctacc
tgaggaaagtcctacctgagaatgctttaacaaagcagcctctgtggcca
gcatctaaagggaggtttgatggggtcttcttttcaggggagatcttcct
tgctgtaggtgtgcttctcagttctgatgtggcaaatgacacaatgacag
tgttcctgtcggggaccagaggaaggaacacctgcaaagctgaggacact
ggggccagcacggcccagcaaagggcctgagccagtaatgagacctggag
ccattttgcatctcaatgacatgtgcaaaaggcaaaatgagatgtctaat
aggcttgtgaggcagtaacatgaggccacctttagtgatgtcgctggctt
tcatggctaaataatacagtcctgtctcattgcctaacaagaataagtgc
aagagagccagcgggtatcaggctgaatgaaaaggatctgctcttgcaga
gaagcgcctgggaattattcgcttcagcaggccatcttgaagggacagat
gccgagccaggtccttccctgtcctggaatcagtgcagctggcctcaggt
cagataaaaataaaggggccagcctcatctccaggaccctaggggcaaaa
gatatgaatgtgtcaatcacaggaggaggctgctgcagagaggctcctca
ggctggggctggcattcccagagaggacattctatctatcgccgagtgtc
tccagacgacttgccttattagcaacagtgatcagcatgactgctccctt
tttctcttagagtaatgtttttgcaccctagatcaatgctgatcttagag
aaagactagttttctggactcggtgggtgtgttgtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_125893610_125894655
seq2: B6Ng01-012C02.b_47_1087

seq1  GAATTCCACATACCATAGACCAGGCTAGCCTTGAGCTCACAGACATCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATACCATAGACCAGGCTAGCCTTGAGCTCACAGACATCTAC  50

seq1  CTGCCTTACATACAAGGGATTCCTCTTTGCGCATCTGCTGTGAATACGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTACATACAAGGGATTCCTCTTTGCGCATCTGCTGTGAATACGCA  100

seq1  GGCAGAGCAAGCCTCAGGACAGCACAGGAGACTTTTTTTGTTGTTCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGCAAGCCTCAGGACAGCACAGGAGACTTTTTTTGTTGTTCTTTC  150

seq1  TTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGCAGCCCTGGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGCAGCCCTGGCTG  200

seq1  TCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGC  250

seq1  CTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGACAGTGCTAACATGCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGACAGTGCTAACATGCCCA  300

seq1  GCTTTTTCACCTTGCCTTTTGAGACAGGGTCTCACTGAACGTTCAGCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTCACCTTGCCTTTTGAGACAGGGTCTCACTGAACGTTCAGCTCA  350

seq1  CTGATTCAGCTAGGCCGGCTGACTGTCAGGCCAGCTCCAGGGATCCTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCAGCTAGGCCGGCTGACTGTCAGGCCAGCTCCAGGGATCCTGTC  400

seq1  TCAGGTGCTCATGCCTGTGTATCAAACATGTTTCTGACAGGCGTCTTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGCTCATGCCTGTGTATCAAACATGTTTCTGACAGGCGTCTTCTC  450

seq1  TAACACTTGGCCCATTCCTTTGCCCTAGAGCAGTGGCTCTCAGTCTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTTGGCCCATTCCTTTGCCCTAGAGCAGTGGCTCTCAGTCTTCCT  500

seq1  AAGGCTGCGACCCTTTAATACAGCTCCTCACGTTGTGGTTGACCCCTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGCGACCCTTTAATACAGCTCCTCACGTTGTGGTTGACCCCTTCC  550

seq1  CACCAGAAAGTTATTTTTTTTGTTGCTACTTCATAACTGTAATTTTGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAAAGTTATTTTTTTTGTTGCTACTTCATAACTGTAATTTTGCTA  600

seq1  CAATTATGACTCATAATGTAACTAATGCCTGTGTTTTCCAATGGTATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATGACTCATAATGTAACTAATGCCTGTGTTTTCCAATGGTATTAA  650

seq1  GGGACCCTGTGGATGTGGACTTCTCGTTGAGAACTGCTGCCTTAGAGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCCTGTGGATGTGGACTTCTCGTTGAGAACTGCTGCCTTAGAGCTT  700

seq1  TGTCCCTGGGGAAAAAAAAGGCCCATGTGCTCAGTCTTACCAGCCTTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTGGGGAAAAAAAAGGCCCATGTGCTCAGTCTTACCAGCCTTTGG  750

seq1  TCCCTGAACATTTTGGGGGGTCAGATGTTCAGTTCTCCTCAGCTACCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGAACATTTTGGGGGGTCAGATGTTCAGTTCTCCTCAGCTACCATA  800

seq1  GCAAGTTCAAGGCCAGCCTGTACTATGTGATTTCCTATTTAAAAAAATAA  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCAAGTTCAAGGCCAGCCTGTACTATGTGATTTCCTATTTAAAAAAAT-A  849

seq1  AAATAATAAAAATACACACACACACACACACACACACACACACACACACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATAAAAATACACACACACACACACACACACACACACACACACACA  899

seq1  CACACACACACACACTCCTAAGGTGATAGTATTTGTTGTAGATATAGAAT  950
      |||||||||||||||| |||| ||||||||||||||||||||||||||||
seq2  CACACACACACACACT-CTAA-GTGATAGTATTTGTTGTAGATATAGAAT  947

seq1  CATTATGAATGGATGAATGGGTGCAAGTCAAAACAAGCTAAAATAGGCAA  1000
      |||||||||||||||||||||||||||||||| |||||||||||| ||||
seq2  CATTATGAATGGATGAATGGGTGCAAGTCAAACCAAGCTAAAATA-GCAA  996

seq1  ATTATTTGGATGTTTGAATATGAAATGTTCTTTATGAAGTCATAGT  1046
      |||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATTATTTGGATGTTTGAATATGAAATGTTCTTTATG-AGTCATAGT  1041

seq1: chr7_126055392_126056579
seq2: B6Ng01-012C02.g_66_1202 (reverse)

seq1  CTACAACACACACACGCACACGCACACGCACACACACACACACACACACA  50
                                           ||| |||||| ||
seq2  -----------------------------------CTACA-ACACACCCA  14

seq1  CACGAGTCAGGAAAACTAGTTCCTATTCCTCTTAAGATTACAGCATTGAT  100
      | ||||||  |||||||||    | || ||| ||||||  ||||||||||
seq2  C-CGAGTCCAGAAAACTAG----TCTTTCTC-TAAGAT--CAGCATTGAT  56

seq1  TCTTAGGGTGCAAAAACATTTAACTCTTAAGAGAAAAAGGGGGCAGTCAT  150
         |||||||||||||||||  |||| |||||||||||||| ||||||||
seq2  --CTAGGGTGCAAAAACATT--ACTC-TAAGAGAAAAAGGGAGCAGTCAT  101

seq1  GCTGATCACTGTTGCTAATAAGGCAAGTCGTCTTGGAGACACTCGGCGAT  200
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCTGATCACTGTTGCTAATAAGGCAAGTCGTC-TGGAGACACTCGGCGAT  150

seq1  AGATAGAATGTCTTCTCTGGGAATGCCAGCCCCAGCCCTGAGGGGCCTCT  250
      |||||||||||| |||||||||||||||||||||| ||||||| ||||||
seq2  AGATAGAATGTCCTCTCTGGGAATGCCAGCCCCAG-CCTGAGGAGCCTCT  199

seq1  CTGCAGCAGCCTCCTCCTGTGATTGACACATTCATATCTTTTGCCCCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCAGCCTCCTCCTGTGATTGACACATTCATATCTTTTGCCCCTAG  249

seq1  GGTCCTGGGGATGAGGCTGGCCCCTTTATTTTTATCTGACCTGAGGCCAG  350
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGGAGATGAGGCTGGCCCCTTTATTTTTATCTGACCTGAGGCCAG  299

seq1  CTGCACTGATTCCAGGACAGGGAAGGACCTGGCTCGGCATCTGTCCCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTGATTCCAGGACAGGGAAGGACCTGGCTCGGCATCTGTCCCTTC  349

seq1  AAGATGGCCTGCTGAAGCGAATAATTCCCAGGCGCTTCTCTGCAAGAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGCCTGCTGAAGCGAATAATTCCCAGGCGCTTCTCTGCAAGAGCA  399

seq1  GATCCTTTTCATTCAGCCTGATACCCGCTGGCTCTCTTGCACTTATTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTTTTCATTCAGCCTGATACCCGCTGGCTCTCTTGCACTTATTCTT  449

seq1  GTTAGGCAATGAGACAGGACTGTATTATTTAGCCATGAAAGCCAGCGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGCAATGAGACAGGACTGTATTATTTAGCCATGAAAGCCAGCGACA  499

seq1  TCACTAAAGGTGGCCTCATGTTACTGCCTCACAAGCCTATTAGACATCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAAAGGTGGCCTCATGTTACTGCCTCACAAGCCTATTAGACATCTC  549

seq1  ATTTTGCCTTTTGCACATGTCATTGAGATGCAAAATGGCTCCAGGTCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCCTTTTGCACATGTCATTGAGATGCAAAATGGCTCCAGGTCTCA  599

seq1  TTACTGGCTCAGGCCCTTTGCTGGGCCGTGCTGGCCCCAGTGTCCTCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGCTCAGGCCCTTTGCTGGGCCGTGCTGGCCCCAGTGTCCTCAGC  649

seq1  TTTGCAGGTGTTCCTTCCTCTGGTCCCCGACAGGAACACTGTCATTGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGGTGTTCCTTCCTCTGGTCCCCGACAGGAACACTGTCATTGTGT  699

seq1  CATTTGCCACATCAGAACTGAGAAGCACACCTACAGCAAGGAAGATCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCCACATCAGAACTGAGAAGCACACCTACAGCAAGGAAGATCTCC  749

seq1  CCTGAAAAGAAGACCCCATCAAACCTCCCTTTAGATGCTGGCCACAGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAAGAAGACCCCATCAAACCTCCCTTTAGATGCTGGCCACAGAGG  799

seq1  CTGCTTTGTTAAAGCATTCTCAGGTAGGACTTTCCTCAGGTAGGACTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTGTTAAAGCATTCTCAGGTAGGACTTTCCTCAGGTAGGACTTTC  849

seq1  CTCAGGTAGGACTTTCCTCAGGTAGGACTTTGCTGAGGAAATCAGGATAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTAGGACTTTCCTCAGGTAGGACTTTGCTGAGGAAATCAGGATAG  899

seq1  ATGGCAAGCTCCTACATTGTCACTGTAAGGTCAAGGGAGGAGTGTGCTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAAGCTCCTACATTGTCACTGTAAGGTCAAGGGAGGAGTGTGCTTT  949

seq1  GTGATTAAGGCTTCCCTTCCCTATTTTTTTTTTTTAACTCCTAAGCAAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTAAGGCTTCCCTTCCCTATTTTTTTTTTTTAACTCCTAAGCAAAT  999

seq1  GGCCATGTTCTCTTCTGTTTGTTATCCAACAGCTGCTAGACTCCCTACTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGTTCTCTTCTGTTTGTTATCCAACAGCTGCTAGACTCCCTACTT  1049

seq1  CCACGTTAGCTGCTCTTCCCTTCTCTGGTCACTCTTCTGGACAGCTTGCA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTTAGCTGCTCTTCCCTTCTCTGGTCACTCTTCTGGACAGCTTGCA  1099

seq1  TTCTAGGTAGGAAGTAGTCAGTGTCCTTGAATGAATTC  1188
      ||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGTAGGAAGTAGTCAGTGTCCTTGAATGAATTC  1137