BAC Information

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BAC

Clone NameB6Ng01-013I12
Chromosome7 (Build37)
Map Location 138,980,163 - 139,133,047
singlet/doubletdoublet
Overlap genenone
Upstream geneEG434249, Plekha1, Htra1, Dmbt1, 4933402N03Rik, 5430419D17Rik, LOC546006, LOC100043173, Cuzd1, 1700007K09Rik, 1700063I17Rik, 2310057M21Rik, Pstk, Ikzf5, Acadsb, Hmx3, Hmx2, Bub3, LOC677073, LOC100043679
Downstream geneGpr26, Cpxm2, 4631426J05Rik, LOC100043682, LOC100043683, Oat, Nkx1-2, 2310007H09Rik, A930008G19Rik, 2010208K18Rik, C430003P19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013I12.bB6Ng01-013I12.g
ACCDH848323DH848324
length474609
definitionDH848323|Mus musculus domesticus DNA, BAC clone: B6Ng01-013I12, 5' end.DH848324|Mus musculus domesticus DNA, BAC clone: B6Ng01-013I12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,980,163 - 138,980,642)(139,132,442 - 139,133,047)
sequence
agaccgagcagaaacccccttagaaaaatgctaaaaaaattaaaaaaata
aaaaagcagcaaaacacacaaacaaaaaaacccctgaggtccaaacacag
tgtgacctccctttcaggggagatccgcttgataaaacggacacaacccc
aataaaactcggacaatagcaaagagcaaatagaaatcacagtaagcagt
ggcaatattgcctgaattgaaacaaaaattaggtataatagcctctgcga
gttttaatatggtctccaatcagatcacaatatgaagcatatcatggcgg
ctctaaacactgcttatcggcttgcgatctccctgcctgctagacagcgt
gcattatttgagctttgtggggtttttttttcttcttcttcttttctttt
ctttttttttttttttaaagaactcataaatatttaatgcccgtgacaga
agctggggtggtggaggggagggg
gaattcccaacaagatctgaggggcatgttttttcttttcctccaatgtt
accaatgcagtggtttgagtctgccatgtgttcagctgtgtgatcaggac
acatggagaaaggcgtcaccactcggttcctgcttccagcactatgctga
aggtcatgcagtgagtcccgtggacctactgtttcctttgcctcaagagc
gttcaggcagctacaaggagctacctcgatggcccttgccattctatggc
cccacttttctcctttcaaagaaggtgggaacagcttcatgtcaggattt
ttttttaaagctcctaatgttggctgtggttccatcactacgcaattaga
attggtaggttagatggactgtgtggtgagtccaattacattggtagaca
ttggcagttgaagcaaccagaacttgtctcattagtggaaaagaatccaa
aaacttgatccctcatatctgtgtgggctcaatttcttttcaagagtctg
ggagcttcacgatcacctcagcctgtcaggagcagtgaggagagctgtct
ttgggtcctgaaagcatctctctctctctctctctctctctctctctctc
tctctctcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_138980163_138980642
seq2: B6Ng01-013I12.b_45_524

seq1  GAATTCAGACCGAGCAGAAACCCCCTTAGAAAAATGCTAAAAAAATTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACCGAGCAGAAACCCCCTTAGAAAAATGCTAAAAAAATTAAA  50

seq1  AAAATAAAAAAGCAGCAAAACACACAAACAAAAAAACCCCTGAGGTCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAAAAGCAGCAAAACACACAAACAAAAAAACCCCTGAGGTCCAA  100

seq1  ACACAGTGTGACCTCCCTTTCAGGGGAGATCCGCTTGATAAAACGGACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTGTGACCTCCCTTTCAGGGGAGATCCGCTTGATAAAACGGACAC  150

seq1  AACCCCAATAAAACTCGGACAATAGCAAAGAGCAAATAGAAATCACAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCAATAAAACTCGGACAATAGCAAAGAGCAAATAGAAATCACAGTA  200

seq1  AGCAGTGGCAATATTGCCTGAATTGAAACAAAAATTAGGTATAATAGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGGCAATATTGCCTGAATTGAAACAAAAATTAGGTATAATAGCCT  250

seq1  CTGCGAGTTTTAATATGGTCTCCAATCAGATCACAATATGAAGCATATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGAGTTTTAATATGGTCTCCAATCAGATCACAATATGAAGCATATCA  300

seq1  TGGCGGCTCTAAACACTGCTTATCGGCTTGCGATCTCCCTGCCTGCTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGGCTCTAAACACTGCTTATCGGCTTGCGATCTCCCTGCCTGCTAGA  350

seq1  CAGCGTGCATTATTTGAGCTTTGTGGGGTTTTTTTTTCTTCTTCTTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTGCATTATTTGAGCTTTGTGGGGTTTTTTTTTCTTCTTCTTCTTT  400

seq1  TCTTTTCTTTTTTTTTTTTTTTAAAGAACTCATAAATATTTAATGCCCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTTTTTTTTTTTTTTTAAAGAACTCATAAATATTTAATGCCCGT  450

seq1  GACAGAAGCTGGGGTGGTGGAGGGGAGGGG  480
      ||||||||||||||||||||||||||||||
seq2  GACAGAAGCTGGGGTGGTGGAGGGGAGGGG  480

seq1: chr7_139132442_139133047
seq2: B6Ng01-013I12.g_67_674 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGCTTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGCTTTCA  50

seq1  GGACCC-AAGACAGCTCTCCTCACTGCTCCTGACAGGCTGAGGTGATCGT  99
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCAAAGACAGCTCTCCTCACTGCTCCTGACAGGCTGAGGTGATCGT  100

seq1  GAAGCTCCCAGACTCTTG-AAAGAAATTGAGCCCACACAGATATGAGGGA  148
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GAAGCTCCCAGACTCTTGAAAAGAAATTGAGCCCACACAGATATGAGGGA  150

seq1  TCAAGTTTTTGGATTCTTTTCCACTAATGAGACAAGTTCTGGTTGCTTCA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTTTTGGATTCTTTTCCACTAATGAGACAAGTTCTGGTTGCTTCA  200

seq1  ACTGCCAATGTCTACCAATGTAATTGGACTCACCACACAGTCCATCTAAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCAATGTCTACCAATGTAATTGGACTCACCACACAGTCCATCTAAC  250

seq1  CTACCAATTCTAATTGCGTAGTGATGGAACCACAGCCAACATTAGGAGCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAATTCTAATTGCGTAGTGATGGAACCACAGCCAACATTAGGAGCT  300

seq1  TTAAAAAAAAATCCTGACATGAAGCTGTTCCCACCTTCTTTGAAAGGAGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAATCCTGACATGAAGCTGTTCCCACCTTCTTTGAAAGGAGA  350

seq1  AAAGTGGGGCCATAGAATGGCAAGGGCCATCGAGGTAGCTCCTTGTAGCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGGGCCATAGAATGGCAAGGGCCATCGAGGTAGCTCCTTGTAGCT  400

seq1  GCCTGAACGCTCTTGAGGCAAAGGAAACAGTAGGTCCACGGGACTCACTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAACGCTCTTGAGGCAAAGGAAACAGTAGGTCCACGGGACTCACTG  450

seq1  CATGACCTTCAGCATAGTGCTGGAAGCAGGAACCGAGTGGTGACGCCTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCTTCAGCATAGTGCTGGAAGCAGGAACCGAGTGGTGACGCCTTT  500

seq1  CTCCATGTGTCCTGATCACACAGCTGAACACATGGCAGACTCAAACCACT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGTGTCCTGATCACACAGCTGAACACATGGCAGACTCAAACCACT  550

seq1  GCATTGGTAACATTGGAGGAAAAGAAAAAACATGCCCCTCAGATCTTGTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGGTAACATTGGAGGAAAAGAAAAAACATGCCCCTCAGATCTTGTT  600

seq1  GGGAATTC  606
      ||||||||
seq2  GGGAATTC  608