BAC Information

Click to search

BAC

Clone NameB6Ng01-014B06
Chromosome7 (Build37)
Map Location 94,964,826 - 94,965,801
singlet/doubletsinglet
Overlap geneGrm5
Upstream geneVmn2r-ps87, LOC637896, EG621430, LOC621477, Nox4, Tyr
Downstream geneCtsc, LOC100039756, Rab38, LOC100039924, LOC666598, EG621562
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014B06.bB6Ng01-014B06.g
ACCDH848724DH848725
length1,217971
definitionDH848724|Mus musculus domesticus DNA, BAC clone: B6Ng01-014B06, 5' end.DH848725|Mus musculus domesticus DNA, BAC clone: B6Ng01-014B06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattctaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaataaactcaaacaag
tcaatggcctttctctatacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatcttggcg
tgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatct
ctgaagaaagaaattaaggaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctattttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacc
taggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatca
ccatgccagacctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtatagagacagacaagtagaccaatggaatagaattgaaga
cccagaaatgaacccacacagctatggtcacttgatcttcgacaagggag
ctaaaccatccagtgaagaaagacagcattttcacaattggtgctggcac
actggtgtatcgtgtagagatgcgaatcgatcatactatctcctgtacta
gtaaatctaagtggatcaggacttcacataaacagagacactgaaactta
tgagagaaggtgtgtaaggctggagaatgggcacagggaaaatcctgaac
gaacagcatgcttgtgctgtagatcggaatgccattgggacaagttcgca
agcaggatcttatgaaaagaccccaccagaattgggaaagatcgttaccc
actctctaatagtccga
gaattcaattgattgtgcatgtaattattttgatctgtgaatttacataa
ttctttattttaattaggtattttcttcatttacatttcaaatgctatcc
caaaagtcccccatactctccccccccccactcccctacccacccactcc
cacttcttggccctggcgttctcctgtactgaggcatataaagttttttt
aatatcggttcttattgacttatgccttcaacaagtaccaatttgtttcc
atatcactgccaagttatattaaatgtaatataataaaaaaataccagtg
tactatggtctacatgcagaccatgtagtaccaattatctagttaaaatc
tgaagaaacagctttaactataataactttgttattttgtgtaaattatc
agctatattctttttttttctgtcaaaggcaagataattttgatggagca
atctgctcatgaatatgagacaccattttatcaactgcttaccagccttt
catcttagttttataaattcttaaataagctttatctaattataaataga
taagtgtcttttttattgcaggagtaaaacatcttttcgcatatgaaatg
gcagtaatttatgataatctcttagaagttggtaaagtaaaaatattaag
ttaccagtgctctaaaatgcctagatgattatgtaattatgtaattgtta
aaagtctcagtgagcttctgtgtgaactttccacttttcacgtgtgcacc
attaaggaaggcatatgaactaaccagcacccccagagctccctagaact
aaaccaccaatcaaagaaaacacatggtgggactcatagctctagctgca
tatgtaacagagatagcctagttggtcatcaatgggagagagacccttag
tcctgtgaaggtctatgcccagtatagggatgccagaagtgagagtgggt
ggtttggggaacaggggtggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_94964826_94965801
seq2: B6Ng01-014B06.g_68_1037

seq1  GAATTCAATTGATTGTGCATGTAATTATTTTGATCTGTGAATTTACATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTGATTGTGCATGTAATTATTTTGATCTGTGAATTTACATAA  50

seq1  TTCTTTATTTTAATTAGGTATTTTCTTCATTTACATTTCAAATGCTATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATTTTAATTAGGTATTTTCTTCATTTACATTTCAAATGCTATCC  100

seq1  CAAAAGTCCCCCATACTCTCCCCCCCCCCACTCCCCTACCCACCCACTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTCCCCCATACTCTCCCCCCCCCCACTCCCCTACCCACCCACTCC  150

seq1  CACTTCTTGGCCCTGGCGTTCTCCTGTACTGAGGCATATAAAGTTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTTGGCCCTGGCGTTCTCCTGTACTGAGGCATATAAAGTTTTTTT  200

seq1  AATATCGGTTCTTATTGACTTATGCCTTCAACAAGTACCAATTTGTTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCGGTTCTTATTGACTTATGCCTTCAACAAGTACCAATTTGTTTCC  250

seq1  ATATCACTGCCAAGTTATATTAAATGTAATATAATAAAAAAATACCAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCACTGCCAAGTTATATTAAATGTAATATAATAAAAAAATACCAGTG  300

seq1  TACTATGGTCTACATGCAGACCATGTAGTACCAATTATCTAGTTAAAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGGTCTACATGCAGACCATGTAGTACCAATTATCTAGTTAAAATC  350

seq1  TGAAGAAACAGCTTTAACTATAATAACTTTGTTATTTTGTGTAAATTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAACAGCTTTAACTATAATAACTTTGTTATTTTGTGTAAATTATC  400

seq1  AGCTATATTCTTTTTTTTTCTGTCAAAGGCAAGATAATTTTGATGGAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATATTCTTTTTTTTTCTGTCAAAGGCAAGATAATTTTGATGGAGCA  450

seq1  ATCTGCTCATGAATATGAGACACCATTTTATCAACTGCTTACCAGCCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTCATGAATATGAGACACCATTTTATCAACTGCTTACCAGCCTTT  500

seq1  CATCTTAGTTTTATAAATTCTTAAATAAGCTTTATCTAATTATAAATAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTAGTTTTATAAATTCTTAAATAAGCTTTATCTAATTATAAATAGA  550

seq1  TAAGTGTCTTTTTTATTGCAGGAGTAAAACATCTTTTCGCATATGAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTCTTTTTTATTGCAGGAGTAAAACATCTTTTCGCATATGAAATG  600

seq1  GCAGTAATTTATGATAATCTCTTAGAAGTTGGTAAAGTAAAAATATTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAATTTATGATAATCTCTTAGAAGTTGGTAAAGTAAAAATATTAAG  650

seq1  TTACCAGTGCTCTAAAATGCCTAGATGATTATGTAATTATGTAATTGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAGTGCTCTAAAATGCCTAGATGATTATGTAATTATGTAATTGTTA  700

seq1  AAAGTCTCAGTGAGCTTCTGTGTGAACTTTCCACTTTTCACGTGTGCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTCAGTGAGCTTCTGTGTGAACTTTCCACTTTTCACGTGTGCACC  750

seq1  ATTAAGGAAGGCATATGAACTAACCAGCACCCCCAGAGCTCCCTAGAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGAAGGCATATGAACTAACCAGCACCCCCAGAGCTCCCTAGAACT  800

seq1  AAACCACCAATCAAAGAAAACACATGGTGGGACTCATAGCTCTAGCTGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACCAATCAAAGAAAACACATGGTGGGACTCATAGCTCTAGCTGCA  850

seq1  TATGTAACAGAGAATAGCCTAGTTGGTCATCAATGGGAGGAGAGACCCTT  900
      |||||||||||| ||||||||||||||||||||||||| |||||||||||
seq2  TATGTAACAGAG-ATAGCCTAGTTGGTCATCAATGGGA-GAGAGACCCTT  898

seq1  AGTCCTGTGAAGGTTCTATGCCCCAGTATAGGGAATGCCAGGAAGTGAGA  950
      ||||||||||||| |||||| |||||||||||| |||||| |||||||||
seq2  AGTCCTGTGAAGG-TCTATG-CCCAGTATAGGG-ATGCCA-GAAGTGAGA  944

seq1  GTGGGTGGTTTGGGGAACAGGGGTGG  976
      ||||||||||||||||||||||||||
seq2  GTGGGTGGTTTGGGGAACAGGGGTGG  970