BAC Information

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BAC

Clone NameB6Ng01-014P16
Chromosome7 (Build37)
Map Location 52,770,205 - 52,904,695
singlet/doubletdoublet
Overlap geneTulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2
Upstream geneMybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1
Downstream geneSec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog, Myod1, Kcnc1, Sergef, Tph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014P16.bB6Ng01-014P16.g
ACCDH849371DH849372
length1,0281,003
definitionDH849371|Mus musculus domesticus DNA, BAC clone: B6Ng01-014P16, 5' end.DH849372|Mus musculus domesticus DNA, BAC clone: B6Ng01-014P16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,903,666 - 52,904,695)(52,770,205 - 52,771,212)
sequence
gaattcagatgcatgtccacttctgtagccctggccggacaccccaggcc
tagggaactcctccagatgtttcagagtgtcttaccatcttgttaaactt
cacgtgtgaacacacatcatgctatctctcacacaattaaagaatacaac
ctatgtagccaccattatgaaaacagccagggtgatgcagggggcggggg
cgggcgggggaagaagccttgcaaaggtgttagctcaggacagcagaatc
ccaaggtgtctctccagaccccctgctaaattggaagtgctgatcctgtg
catgagaagtagcctggagtggccacggtggcacctgcctttcatccttg
cactgtgaaggctaaggcaggaggccagcctggtctatatcctaaaaccc
tgtctcaaaagataaaattctcaaactgggtatagtggtgcacagcggtg
gtcccagcattaggtaagtgcagaaagatcaagagttggaagtcatccac
agctacacggaatggcagaccagtctgagctgcatgagaagccccttacc
ccatctcagaaacagaaagaaaattacagaaatctaagctccgcagtggc
agtatacactcaggaggcagcggccagtagatctttgggtttgaggatag
cctgggctacacagaagtcctatgtcacgaattttttttttttttcaaaa
tccaaaacaaataaaaatgtgcctctccatcacatttcatggtttttgtt
tgcttggtcttttgagagagtagctctacatagctctagctgtcctgaaa
cctaaaatgtagaccaggctggccttgagagtggataataagatcaaagg
tgtgtgtcaatcgtgcccagccccattttacatttcttgaaagtgattga
gtgggtttgagtcactgctcaagctgcctaaggaggacgtgagtgctgca
tagccttattccagcgctatggaggcgaaaacaggcatgcagatctctgt
gattcaggctaggctggtccacatatga
gaattcagctttattttgagacaggactttgcggcctggccctggctctc
aaacgtgcagcttgagtgctagagttacagtgagccttccagtttattgt
gtttgtttatttttggttttaaattacattcatttggggtagagtacacg
aaccccatggcatgtgtgtggagacaacttgcaggggcaggttctttcct
gtgacaacattaggactcgaactcagctggtgacgataagatggctcgcc
catttaccaacctagccctctctcgggcctaattagtcattttctgagat
ggccttactctgtagtctttataccggcctttgtattttgaaacagggac
taagttgtgagtctggaaattgcaaccctcaagcctctgccagaatggct
gaggaaaaattttaaggaataaaagttctagagtctttggaggaggaggt
gaaagtagaccagatctgacaggacaggactggagggactggatacctgg
gcctcctgtggaggaagggtacccggactctcccaggccaacctcccccc
tgtctgtgtctggtttcctccttgcttctgcagcgacagctatttgagaa
gaagcagcgcagaaacgccaggagcccctcatggttcaggccaatcctga
tgctaccctgaggcaccggcgaccaaggcgcggggaggagcgcttccaga
gtgacagcagctggggccttggtctggtggaccgggtttaggcgcgcttt
gagggcagggcctagtgaatcctagagggtgaacttagccccagggaggg
aactcggtggcatcagcggtggggaacctatagaggtcttctttgagata
gaagatggggctgtaagttcaggtctctaacatttaagggcgggagccta
tgggattcctaggggtggagcttagacggaggttggagagcatatggcag
aacaatgggcgtggcttatttgagctggggctcctgaatctccctcacaa
gat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_52903666_52904695
seq2: B6Ng01-014P16.b_47_1074 (reverse)

seq1  TCATATGTGGACCAGGCTAGCCTGGAATTCACAGAGATCTGCCTGCCTGT  50
      ||||||||||||||| ||||||||  | |||||||||||||| |||||||
seq2  TCATATGTGGACCAGCCTAGCCTG--AATCACAGAGATCTGCATGCCTGT  48

seq1  TTTCGCCTCCATAGCGCTGGGATTAAGGCTATGCAGCACTCACGTCCCTC  100
      |||||||||||||||||| ||| ||||||||||||||||||||||||  |
seq2  TTTCGCCTCCATAGCGCT-GGAATAAGGCTATGCAGCACTCACGTCCTCC  97

seq1  CTAGGCAGCTGGAGCAGTGACTCAAACCCACTCAATCACTTTCAAG-AAT  149
       ||||||||| ||||||||||||||||||||||||||||||||||| |||
seq2  TTAGGCAGCTTGAGCAGTGACTCAAACCCACTCAATCACTTTCAAGAAAT  147

seq1  GTAAAATGGGGCTGGGCACGATTGACACACACCTTTGATCTTATTAT-CA  198
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTAAAATGGGGCTGGGCACGATTGACACACACCTTTGATCTTATTATCCA  197

seq1  CTCTCAAGGCCAGCCTGGTCTACATTGTAGGTTTCAGGACAGCTAGAGCT  248
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTCTCAAGGCCAGCCTGGTCTACATTTTAGGTTTCAGGACAGCTAGAGCT  247

seq1  ATGTAGAGCTACTCTCTCAAAAGACCAAGCAAACAAAAACCATGAAATTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATGTAGAGCTACTCTCTCAAAAGACCAAGCAAACAAAAACCATGAAA-TG  296

seq1  TGATGGAGAGGCACATTTTTATTTGTTTTGGATTTTGAAAAAAAAAAAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGAGAGGCACATTTTTATTTGTTTTGGATTTTGAAAAAAAAAAAAA  346

seq1  ATTCGTGACATAGGACTTCTGTGTAGCCCAGGCTATCCTCAAACCCAAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGTGACATAGGACTTCTGTGTAGCCCAGGCTATCCTCAAACCCAAAG  396

seq1  ATCTACTGGCCGCTGCCTCCTGAGTGTATACTGCCACTGCGGAGCTTAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTGGCCGCTGCCTCCTGAGTGTATACTGCCACTGCGGAGCTTAGA  446

seq1  TTTCTGTAATTTTCTTTCTGTTTCTGAGATGGGGTAAGGGGCTTCTCATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTAATTTTCTTTCTGTTTCTGAGATGGGGTAAGGGGCTTCTCATG  496

seq1  CAGCTCAGACTGGTCTGCCATTCCGTGTAGCTGTGGATGACTTCCAACTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAGACTGGTCTGCCATTCCGTGTAGCTGTGGATGACTTCCAACTC  546

seq1  TTGATCTTTCTGCACTTACCTAATGCTGGGACCACCGCTGTGCACCACTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTTTCTGCACTTACCTAATGCTGGGACCACCGCTGTGCACCACTA  596

seq1  TACCCAGTTTGAGAATTTTATCTTTTGAGACAGGGTTTTAGGATATAGAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGTTTGAGAATTTTATCTTTTGAGACAGGGTTTTAGGATATAGAC  646

seq1  CAGGCTGGCCTCCTGCCTTAGCCTTCACAGTGCAAGGATGAAAGGCAGGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGCCTCCTGCCTTAGCCTTCACAGTGCAAGGATGAAAGGCAGGT  696

seq1  GCCACCGTGGCCACTCCAGGCTACTTCTCATGCACAGGATCAGCACTTCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCGTGGCCACTCCAGGCTACTTCTCATGCACAGGATCAGCACTTCC  746

seq1  AATTTAGCAGGGGGTCTGGAGAGACACCTTGGGATTCTGCTGTCCTGAGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGCAGGGGGTCTGGAGAGACACCTTGGGATTCTGCTGTCCTGAGC  796

seq1  TAACACCTTTGCAAGGCTTCTTCCCCCGCCCGCCCCCGCCCCCTGCATCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACCTTTGCAAGGCTTCTTCCCCCGCCCGCCCCCGCCCCCTGCATCA  846

seq1  CCCTGGCTGTTTTCATAATGGTGGCTACATAGGTTGTATTCTTTAATTGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCTGTTTTCATAATGGTGGCTACATAGGTTGTATTCTTTAATTGT  896

seq1  GTGAGAGATAGCATGATGTGTGTTCACACGTGAAGTTTAACAAGATGGTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGATAGCATGATGTGTGTTCACACGTGAAGTTTAACAAGATGGTA  946

seq1  AGACACTCTGAAACATCTGGAGGAGTTCCCTAGGCCTGGGGTGTCCGGCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTCTGAAACATCTGGAGGAGTTCCCTAGGCCTGGGGTGTCCGGCC  996

seq1  AGGGCTACAGAAGTGGACATGCATCTGAATTC  1030
      ||||||||||||||||||||||||||||||||
seq2  AGGGCTACAGAAGTGGACATGCATCTGAATTC  1028

seq1: chr7_52770205_52771212
seq2: B6Ng01-014P16.g_70_1072

seq1  GAATTCAGCTTTATTTTGAGACAGGACTTTGCGGCCTGGCCCTGGCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTTTATTTTGAGACAGGACTTTGCGGCCTGGCCCTGGCTCTC  50

seq1  AAACGTGCAGCTTGAGTGCTAGAGTTACAGTGAGCCTTCCAGTTTATTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTGCAGCTTGAGTGCTAGAGTTACAGTGAGCCTTCCAGTTTATTGT  100

seq1  GTTTGTTTATTTTTGGTTTTAAATTACATTCATTTGGGGTAGAGTACACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTATTTTTGGTTTTAAATTACATTCATTTGGGGTAGAGTACACG  150

seq1  AACCCCATGGCATGTGTGTGGAGACAACTTGCAGGGGCAGGTTCTTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCATGGCATGTGTGTGGAGACAACTTGCAGGGGCAGGTTCTTTCCT  200

seq1  GTGACAACATTAGGACTCGAACTCAGCTGGTGACGATAAGATGGCTCGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAACATTAGGACTCGAACTCAGCTGGTGACGATAAGATGGCTCGCC  250

seq1  CATTTACCAACCTAGCCCTCTCTCGGGCCTAATTAGTCATTTTCTGAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACCAACCTAGCCCTCTCTCGGGCCTAATTAGTCATTTTCTGAGAT  300

seq1  GGCCTTACTCTGTAGTCTTTATACCGGCCTTTGTATTTTGAAACAGGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTACTCTGTAGTCTTTATACCGGCCTTTGTATTTTGAAACAGGGAC  350

seq1  TAAGTTGTGAGTCTGGAAATTGCAACCCTCAAGCCTCTGCCAGAATGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTGTGAGTCTGGAAATTGCAACCCTCAAGCCTCTGCCAGAATGGCT  400

seq1  GAGGAAAAATTTTAAGGAATAAAAGTTCTAGAGTCTTTGGAGGAGGAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAAATTTTAAGGAATAAAAGTTCTAGAGTCTTTGGAGGAGGAGGT  450

seq1  GAAAGTAGACCAGATCTGACAGGACAGGACTGGAGGGACTGGATACCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTAGACCAGATCTGACAGGACAGGACTGGAGGGACTGGATACCTGG  500

seq1  GCCTCCTGTGGAGGAAGGGTACCCGGACTCTCCCAGGCCAACCTCCCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTGTGGAGGAAGGGTACCCGGACTCTCCCAGGCCAACCTCCCCCC  550

seq1  TGTCTGTGTCTGGTTTCCTCCTTGCTTCTGCAGCGACAGCTATTTGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTGTCTGGTTTCCTCCTTGCTTCTGCAGCGACAGCTATTTGAGAA  600

seq1  GAAGCAGCGCAGGAAACGCCAGGAGCCCCTCATGGTTCAGGCCAATCCTG  650
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGCGCA-GAAACGCCAGGAGCCCCTCATGGTTCAGGCCAATCCTG  649

seq1  ATGCTACCCTGAGGCACCGGCGACCAAGGCGCGGGGAGGAGCGCTTCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTACCCTGAGGCACCGGCGACCAAGGCGCGGGGAGGAGCGCTTCCAG  699

seq1  AGTGACAGCAGCTGGGGCCTTGGTCTGGTGGACCGGGTTTAGGCGCGC-T  749
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGTGACAGCAGCTGGGGCCTTGGTCTGGTGGACCGGGTTTAGGCGCGCTT  749

seq1  TGAGGGCAGGGCCTAGTGAATCCTAGAGGGTGGAACTTAGCCCCAGGGAG  799
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGAGGGCAGGGCCTAGTGAATCCTAGAGGGT-GAACTTAGCCCCAGGGAG  798

seq1  GGAACTCGGTGGCATCAGCGGTGGGGAACCTATAAGAGGTCCTCTTTGAG  849
      ||||||||||||||||||||||||||||||||| ||||||| ||||||| 
seq2  GGAACTCGGTGGCATCAGCGGTGGGGAACCTAT-AGAGGTCTTCTTTGA-  846

seq1  GATAG-AGATGGGGCTGTAAG-TCAGGTCTCTAACATATCAGGGC-GGAG  896
      ||||| ||||||||||||||| ||||||||||||||| | ||||| ||||
seq2  GATAGAAGATGGGGCTGTAAGTTCAGGTCTCTAACATTTAAGGGCGGGAG  896

seq1  CCTAT-GGATTCCTAGGGGTGGAGCTTAGGACGGAGGTTGGAAGAGCATA  945
      ||||| |||||||||||||||||||||| |||||||||||| ||||||||
seq2  CCTATGGGATTCCTAGGGGTGGAGCTTA-GACGGAGGTTGG-AGAGCATA  944

seq1  TGGTAGAGCATAGGGGCGTGGCTTATTTGAGCGTGGGGCTCCTGGAATCT  995
      ||| ||| || | ||||||||||||||||||| |||||||||| ||||||
seq2  TGGCAGAACA-ATGGGCGTGGCTTATTTGAGC-TGGGGCTCCT-GAATCT  991

seq1  CTCTACACAAGAT  1008
      | || ||||||||
seq2  CCCT-CACAAGAT  1003