BAC Information

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BAC

Clone NameB6Ng01-015D11
Chromosome3 (Build37)7 (Build37)
Map Location 131,011,934 - 131,012,32193,230,273 - 93,231,458
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCol25a1, Agxt2l1, 2310008M10Rik, Rpl34, LOC546811, LOC545568, Lef1, 6720418B01Rik, Hadh, Cyp2u1
Downstream geneSgms2, LOC100043443, Papss1, Olfr375-ps1, Dkk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015D11.bB6Ng01-015D11.g
ACCDH849535DH849536
length9691,161
definitionDH849535|Mus musculus domesticus DNA, BAC clone: B6Ng01-015D11, 5' end.DH849536|Mus musculus domesticus DNA, BAC clone: B6Ng01-015D11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(131,011,934 - 131,012,321)(93,230,273 - 93,231,458)
sequence
gaattctggtgatcgcagtttcagttttgcagacatttgaattggcactt
tgggagggagtacggagtggataagaatagacgtattcaggtgtccactg
tccattcaccccgggagacatcccgggaagaagggggagggccagggacg
cctggcggaccccatgtggagaccggggggaccgactctccccccggcaa
tctgaggcggcaagggccgctgccagtcgacattgtctcagttcttttct
ggtcgactcggaacaggagacagattttctctatttcagtgattgtcttt
tgtcttgtctttgtcatttgtattatagatttagaaatgggacagactgt
gacgacccccctgacactaacccatgaccagtgggcagatgttaagacta
gggctcataatctttctgttgaagttagaaaaagaccttggcggacgttc
tgttttttggagtggcccaccttcggagtgggttggccatgaggtgggac
tcttaatcttcccatcatttacactgttaagtgcattgtctttcagaacc
ctggaggccatccagatcaggtcccctatatcctggtctggcaggatctg
gtccaaaatccaccaccttggctcaaaccttggaccacgggacgcgagcc
agcgatggtggccatggcagcaaaaccaaaaatcccagccgaggggagcg
gtctgcccgcccctccacatatttatcctgaatttgaggaggtctctctt
ttagatctccaaccacccccttaccctacccctgcccttcaaactcttcc
tccatcggcacccccacccccaccagcctacaaaaggggccagtgatagt
gggccggcggccggcacccagagttgccggggtcgcagtcccgatggagc
tgtcctggagctgtcctctgtgacagctctgccactcaagccagcctgga
gctgtctcggtgacagctc
gaattcaattcctttcagaattgataggagaaatgcaacaaacaaacaaa
caaacaaaaagaaaacacccccccccaaaaaaaaaccaaaaaccattgtc
tgtttatcagttgtgatttttttacaaaatgagaaattaatgggccttaa
agagtatcatatgtattataaccaaatctcaatgtcatcagcaaaagttg
tgatagcttatggagacaaagatgcttccatacatttcaccctcattctg
tggaagtatgaaggcatttggagaacatgggttagtgtgtcataatttga
tataatcacaattataggagatttcttgctatgctcctccatggggactt
tcattttttcacaccagaaacctgaaatatctggctttgaacaatttatc
caaagagtacagccttcaaactatagtagtgaattttcttttgccaaact
atggtggacatattttagatgatctttgccaccatctaattgaaagaagc
tgaagaattgtccaaccaaaactgtatttaaatggttattcataacacca
tttggaatggctatgagtgacacattataatttatacaacgctgtgtata
ctatggcccactcactccatgagatgtttatgcaacaagtagacacatgg
tcaaagaatgctgggaaggaactgaactttgacttttgtaaagtaatgag
tgttacactaattggcatttatagggtttgtgtgttttaatagaaccaca
tggtcgaaagctatctcaataaattatttcaccaataaatgtatatattt
ctgtactttattattgcatagggtagaagatcatattagtgtcatgaatt
aggacacagtcaacactgacatgcaaggcagcattcataatcaaagtcat
gaattttttccagatattaaaacatatatgtgagtcacgtattaattttt
tctcatgaaacacttaaatagtatagaaaatgatttgtcttttatgtatc
aaagtgctgatcaatttaccaaggagatcctgaatatcaagtactttcct
tttaatcacttatataaaattcggttccattgcttgtgaacaataaactc
tttgccgaaaaatcattagaaaccttttctctagtcaagtggaatcggag
tctagcattta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_131011934_131012321
seq2: B6Ng01-015D11.b_49_399 (reverse)

seq1  CACAGTCTGTCCCATTTCTAAATCTATAATACAAATGACAAAGACAAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCTGTCCCATTTCTAAATCTATAATACAAATGACAAAGACAAGAC  50

seq1  AAACAACAATTACTGAAATAGAGAAAATCTGTCTCCTGTTCCGAGTTGAC  100
      |||  ||||| ||||||||||||||||||||||||||||||||||| |||
seq2  AAAAGACAATCACTGAAATAGAGAAAATCTGTCTCCTGTTCCGAGTCGAC  100

seq1  CAGAAAAAAACTGAGACACTGTCAACCGGCCGCGGCCCTTGCCGCCTCAG  150
      ||||||| |||||||||| |||| || ||| |||||||||||||||||||
seq2  CAGAAAAGAACTGAGACAATGTCGACTGGCAGCGGCCCTTGCCGCCTCAG  150

seq1  ATTGCCCGGGGGGGGGGGGGGGGGGGGGGGGGGAGTCGGTCCCCCCCCCC  200
      ||||||                   |||||| ||||||||          
seq2  ATTGCC-------------------GGGGGGAGAGTCGGT----------  171

seq1  CCCCCCCCCGTCTCCAGATGGAGGTACACCAGGCGTCCCTGGCCCTCCCC  250
        |||||| ||||||| |||| ||| | ||||||||||||||||||||||
seq2  --CCCCCCGGTCTCCACATGG-GGTCCGCCAGGCGTCCCTGGCCCTCCCC  218

seq1  CTGTCTTCCTGGGACACCTCCCAGGGCGAATGGATGGTGGACACCTGAAT  300
      || |||||| ||||   ||||| ||| |||||||  ||||||||||||||
seq2  CT-TCTTCCCGGGATGTCTCCCGGGGTGAATGGACAGTGGACACCTGAAT  267

seq1  ACGTCTATTCTTATCCACTCCACACTCCCTCCCAGAGTGCCAATTCAAAC  350
      |||||||||||||||||||||  ||||||||||| ||||||||||||   
seq2  ACGTCTATTCTTATCCACTCCGTACTCCCTCCCAAAGTGCCAATTCA---  314

seq1  GAACGTCCGCAAAACTGAAACTGTGATCGCCAGAATTC  388
       || ||| ||||||||||||||| |||| |||||||||
seq2  -AATGTCTGCAAAACTGAAACTGCGATCACCAGAATTC  351

seq1: chr7_93230273_93231458
seq2: B6Ng01-015D11.g_69_1229 (reverse)

seq1  TAAATGCTAGACTCCTGATTTTCATCTTTGAACTATGAAAACAGGTTCTC  50
      ||||||||||||||| ||  |||  |||   |||| || || ||||| ||
seq2  TAAATGCTAGACTCC-GA--TTCCACTT--GACTA-GAGAAAAGGTT-TC  43

seq1  T-ATGATTTTTTCTGCCAATAGAGTTATTTGTTCACAAGCAATGGAACAG  99
      | |||| |||||| ||  | ||||||  |||||||||||||||||||| |
seq2  TAATGA-TTTTTCGGC--AAAGAGTTTATTGTTCACAAGCAATGGAACCG  90

seq1  AAATTATTAATTAATAAGTGAATTAAAAAGGAAAGTACTTGATATATTCA  149
      || ||     |  ||||||||  | ||||||||||||||||  |||||||
seq2  AATTT-----TATATAAGTGA--TTAAAAGGAAAGTACTTG--ATATTCA  131

seq1  GGATCTCTTTGGTAAATTGATCAGCAACTTTTGAATAACATAAAAGACAA  199
      ||||||| ||||||||||||||||||   |||||   |||||||||||||
seq2  GGATCTCCTTGGTAAATTGATCAGCA--CTTTGA--TACATAAAAGACAA  177

seq1  ATCATTTTCTTATTACTATTTAAGTGTTTCATGAGAAAAAAATTAATACG  249
      ||||||||||   |||||||||||||||||||||| ||||||||||||||
seq2  ATCATTTTCT--ATACTATTTAAGTGTTTCATGAG-AAAAAATTAATACG  224

seq1  TGACTCACATATATGTTTTAAATATCTGGAAAAAATTCATGACTTTGATT  299
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGACTCACATATATGTTTT-AATATCTGGAAAAAATTCATGACTTTGATT  273

seq1  ATGAATGCTGCCTTGCATGTCAGTGTTGACTGTGTCCTAATTCATGACAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGCTGCCTTGCATGTCAGTGTTGACTGTGTCCTAATTCATGACAC  323

seq1  TAATATGATCTTCTA-CCTATGCAATAATAAAGTACAGAAATATATACAT  398
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TAATATGATCTTCTACCCTATGCAATAATAAAGTACAGAAATATATACAT  373

seq1  TTATTGGTGAAATAATTTATTGAGATAGCTTTCGACCATGTGGTTCTATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGTGAAATAATTTATTGAGATAGCTTTCGACCATGTGGTTCTATT  423

seq1  AAAACACACAAACCCTATAAATGCCAATTAGTGTAACACTCATTACTTTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACACAAACCCTATAAATGCCAATTAGTGTAACACTCATTACTTTA  473

seq1  CAAAAGTCAAAGTTCAGTTCCTTCCCAGCATTCTTTGACCATGTGTCTAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTCAAAGTTCAGTTCCTTCCCAGCATTCTTTGACCATGTGTCTAC  523

seq1  TTGTTGCATAAACATCTCATGGAGTGAGTGGGCCATAGTATACACAGCGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCATAAACATCTCATGGAGTGAGTGGGCCATAGTATACACAGCGT  573

seq1  TGTATAAATTATAATGTGTCACTCATAGCCATTCCAAATGGTGTTATGAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAATTATAATGTGTCACTCATAGCCATTCCAAATGGTGTTATGAA  623

seq1  TAACCATTTAAATACAGTTTTGGTTGGACAATTCTTCAGCTTCTTTCAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATTTAAATACAGTTTTGGTTGGACAATTCTTCAGCTTCTTTCAAT  673

seq1  TAGATGGTGGCAAAGATCATCTAAAATATGTCCACCATAGTTTGGCAAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGGTGGCAAAGATCATCTAAAATATGTCCACCATAGTTTGGCAAAA  723

seq1  GAAAATTCACTACTATAGTTTGAAGGCTGTACTCTTTGGATAAATTGTTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTCACTACTATAGTTTGAAGGCTGTACTCTTTGGATAAATTGTTC  773

seq1  AAAGCCAGATATTTCAGGTTTCTGGTGTGAAAAAATGAAAGTCCCCATGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAGATATTTCAGGTTTCTGGTGTGAAAAAATGAAAGTCCCCATGG  823

seq1  AGGAGCATAGCAAGAAATCTCCTATAATTGTGATTATATCAAATTATGAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCATAGCAAGAAATCTCCTATAATTGTGATTATATCAAATTATGAC  873

seq1  ACACTAACCCATGTTCTCCAAATGCCTTCATACTTCCACAGAATGAGGGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAACCCATGTTCTCCAAATGCCTTCATACTTCCACAGAATGAGGGT  923

seq1  GAAATGTATGGAAGCATCTTTGTCTCCATAAGCTATCACAACTTTTGCTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTATGGAAGCATCTTTGTCTCCATAAGCTATCACAACTTTTGCTG  973

seq1  ATGACATTGAGATTTGGTTATAATACATATGATACTCTTTAAGGCCCATT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATTGAGATTTGGTTATAATACATATGATACTCTTTAAGGCCCATT  1023

seq1  AATTTCTCATTTTGTAAAAAAATCACAACTGATAAACAGACAATGGTTTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTCATTTTGTAAAAAAATCACAACTGATAAACAGACAATGGTTTT  1073

seq1  TGGTTTTTTTTTGGGGGGGGGTGTTTTCTTTTTGTTTGTTTGTTTGTTTG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTTTTTTGGGGGGGGGTGTTTTCTTTTTGTTTGTTTGTTTGTTTG  1123

seq1  TTGCATTTCTCCTATCAATTCTGAAAGGAATTGAATTC  1186
      ||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTTCTCCTATCAATTCTGAAAGGAATTGAATTC  1161