BAC Information

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BAC

Clone NameB6Ng01-015O23
Chromosome7 (Build37)
Map Location 52,549,083 - 52,685,923
singlet/doubletdoublet
Overlap geneTrpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2
Upstream geneEG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik
Downstream geneGys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog, Myod1, Kcnc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015O23.bB6Ng01-015O23.g
ACCDH850056DH850057
length979810
definitionDH850056|Mus musculus domesticus DNA, BAC clone: B6Ng01-015O23, 5' end.DH850057|Mus musculus domesticus DNA, BAC clone: B6Ng01-015O23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,549,083 - 52,550,031)(52,685,109 - 52,685,923)
sequence
gaattccaggagaacccatgtacacacacagacagacagacagacagaca
tagacacagacacacacacacacacagacacacacacacagatacacaca
cacacacagacacacagacacacagacacacacacacacctaaaagtaaa
atagcctggcatgtaacttttctgctactttgtgggctccacgtgggtcc
tcctcctaactgtctgctaacattctcttttctggatcagctcagcttct
cctggctcaatggtctcctatttttacaaactcttaacttcctgccagtt
ctcctcccagtttccagcccagccccttcaaatatttctcccaattcttc
ctccctcagctccccaacagtctgcttaagcagtcccttctcccagtttc
cccaatactaacagctcccagctttaacaactgttcaaccctatctagta
taccaatggcattacccttaaaatggttgacagacaagcctgtgtggata
gaccaatggccttaactaaagactaactatagacacttgaacagttggta
caagagcagttggaggcacaacatatagaaggatctacctatgggattcc
cctgcatttgttataagaaagaaattgggaaatgggatatgacaacagat
ttgagaatggtgaatagagtaatccaactaatgggtccattagagcctgg
aattcctttactttctttattacctaaggcatggcctatgatagtaattt
attttaaaggctgtttttttttttttgtctgtttgtttgtctgtttgttt
actatcccttgcaagagcaggatgaagaaaattttgcccttcataggtgc
atacgttttatgctcagcctgtaaaagtcagtggccagctcttccacaag
gaatgttacatagtccactctatgtcatagtttgtgcaacatcactagaa
ataatttgtaggcatttttcatcattatt
gaattctacctttttgaaaggaagcaccctctcacttcagtgcttgagtt
agaacccaaggtcacatgcagtccctgtgctgagtctcatgtcttccaga
ggggacacagctcactgtaagagtgtggtgtcgtggaggcagtgggtggt
gggtgggcctggtacctgtgcccctctgaggtttattgcagagccactag
ctgctgtaccagggtgctgtccttaccttttcctggatggcctctaggct
cggccctaacctgtctctccgcatccctgtggctgggccccaggctggga
gaatgggagcagcaagctctggcttgtcagtgtgatgtggaaaggcagca
cctgggtgccaagtccttgtgtcctcccacagcgcggtccgttagctctt
gagctcagtgcctggggctttggtagcgtcatccagctcttggatgccac
gcacgtaacggtgctctggcatcttcctgccttcgtttgaccaagagagc
agcctgagctcagcagccacacggtgctgcttagaccagccagtgctgcc
tagaccagccgtaactctgcttcccttcctccaatgcaggcgctcactcc
cacatccgggggctgggactggatgatgccctggagccaagacaggtaga
gccatggggctgggcacgtgggctgttcctgccagcagtctcgggcctct
tgattccatactgaaccacctcagacgggaggcagaggcacttggatctc
tatgagttcaaggccagcctggtctatagagcgagacccttctcagaaga
agagaaagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_52549083_52550031
seq2: B6Ng01-015O23.b_48_992

seq1  GAATTCCAGGAGAACCCATGTACACACACAGACAGACAGACAGACAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAGAACCCATGTACACACACAGACAGACAGACAGACAGACA  50

seq1  TAGACACAGACACACACACACACACAGACACACACACACAGATACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACAGACACACACACACACACAGACACACACACACAGATACACACA  100

seq1  CACACACAGACACACAGACACACAGACACACACACACACCTAAAAGTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAGACACACAGACACACAGACACACACACACACCTAAAAGTAAA  150

seq1  ATAGCCTGGCATGTAACTTTTCTGCTACTTTGTGGGCTCCACGTGGGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCTGGCATGTAACTTTTCTGCTACTTTGTGGGCTCCACGTGGGTCC  200

seq1  TCCTCCTAACTGTCTGCTAACATTCTCTTTTCTGGATCAGCTCAGCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTAACTGTCTGCTAACATTCTCTTTTCTGGATCAGCTCAGCTTCT  250

seq1  CCTGGCTCAATGGTCTCCTATTTTTACAAACTCTTAACTTCCTGCCAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTCAATGGTCTCCTATTTTTACAAACTCTTAACTTCCTGCCAGTT  300

seq1  CTCCTCCCAGTTTCCAGCCCAGCCCCTTCAAATATTTCTCCCAATTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCAGTTTCCAGCCCAGCCCCTTCAAATATTTCTCCCAATTCTTC  350

seq1  CTCCCTCAGCTCCCCAACAGTCTGCTTAAGCAGTCCCTTCTCCCAGTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCAGCTCCCCAACAGTCTGCTTAAGCAGTCCCTTCTCCCAGTTTC  400

seq1  CCCAATACTAACAGCTCCCAGCTTTAACAACTGTTCAACCCTATCTAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATACTAACAGCTCCCAGCTTTAACAACTGTTCAACCCTATCTAGTA  450

seq1  TACCAATGGCATTACCCTTAAAATGGTTGACAGACAAGCCTGTGTGGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAATGGCATTACCCTTAAAATGGTTGACAGACAAGCCTGTGTGGATA  500

seq1  GACCAATGGCCTTAACTAAAGACTAACTATAGACACTTGAACAGTTGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAATGGCCTTAACTAAAGACTAACTATAGACACTTGAACAGTTGGTA  550

seq1  CAAGAGCAGTTGGAGGCACAACATATAGAAGGATCTACCTATGGGATTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCAGTTGGAGGCACAACATATAGAAGGATCTACCTATGGGATTCC  600

seq1  CCTGCATTTGTTATAAGAAAGAAATTGGGAAATGGGATATGACAACAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATTTGTTATAAGAAAGAAATTGGGAAATGGGATATGACAACAGAT  650

seq1  TTGAGAATGGTGAATAGAGTAATCCAACTAATGGGTCCATTAGAGCCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAATGGTGAATAGAGTAATCCAACTAATGGGTCCATTAGAGCCTGG  700

seq1  AATTCCTTTACTTTCTTTATTACCTAAGGCATGGCCTATGATAGTAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTTTACTTTCTTTATTACCTAAGGCATGGCCTATGATAGTAATTT  750

seq1  ATTTTAAAGGCTGTTTTTTTTTTTTTGTCTGTTTGTTTGTCTGTTTGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATTTTAAAGGCTGTTTTTTTTTTTTTGTCTGTTTGTTTGTCTGTTTG-TT  799

seq1  TACTATCCCTTGCAAGAGCAGGATGAAGAAAATTTTG-CCTTCATAGGTG  849
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TACTATCCCTTGCAAGAGCAGGATGAAGAAAATTTTGCCCTTCATAGGTG  849

seq1  CATACGTATAATGCTCAGCCTGTAAAAAGTCAGTGGGCAGCTCTTCCACA  899
      ||||||| | ||||||||||||| |||||||||||| |||||||||||||
seq2  CATACGTTTTATGCTCAGCCTGT-AAAAGTCAGTGGCCAGCTCTTCCACA  898

seq1  AGGAATGTTACATAGTCCAACTCTATGTCAATAGTTTGTGCAACAATCAC  949
      |||||||||||||||||| |||||||||| |||||||||||||| |||||
seq2  AGGAATGTTACATAGTCC-ACTCTATGTC-ATAGTTTGTGCAAC-ATCAC  945

seq1: chr7_52685109_52685923
seq2: B6Ng01-015O23.g_69_878 (reverse)

seq1  GACTTTCTCTTCTTTCTGAGATGGGGTCTCACTCTTTAGACCAGGCTGGC  50
      |||||||||||| ||||||||  ||||||| |||| ||||||||||||||
seq2  GACTTTCTCTTC-TTCTGAGA-AGGGTCTCGCTCTATAGACCAGGCTGGC  48

seq1  CTTGAACTCATAGAGATCCAAGTGCCTCTGCCTCCCGTCTGAGGTGGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACTCATAGAGATCCAAGTGCCTCTGCCTCCCGTCTGAGGTGGTTC  98

seq1  AGTATGGAATCAAGAGGCCCGAAGACCTGCCTGGCAGGAACAGCCCACGT  150
      ||||||||||||||||||||| ||| ||| ||||||||||||||||||||
seq2  AGTATGGAATCAAGAGGCCCG-AGA-CTG-CTGGCAGGAACAGCCCACGT  145

seq1  GCCCAGCCCCATGGCTCTACCTGTCTTGGCTCCAGGGCATCATCCAGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCCCCATGGCTCTACCTGTCTTGGCTCCAGGGCATCATCCAGTCC  195

seq1  CAGCCCCCGGATGTGGGAGTGAGCGCCTGCATTGGAGGAAGGGAAGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCCGGATGTGGGAGTGAGCGCCTGCATTGGAGGAAGGGAAGCAGA  245

seq1  GTTACGGCTGGTCTAGGCAGCACTGGCTGGTCTAAGCAGCACCGTGTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACGGCTGGTCTAGGCAGCACTGGCTGGTCTAAGCAGCACCGTGTGGC  295

seq1  TGCTGAGCTCAGGCTGCTCTCTTGGTCAAACGAAGGCAGGAAGATGCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGCTCAGGCTGCTCTCTTGGTCAAACGAAGGCAGGAAGATGCCAG  345

seq1  AGCACCGTTACGTGCGTGGCATCCAAGAGCTGGATGACGCTACCAAAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCGTTACGTGCGTGGCATCCAAGAGCTGGATGACGCTACCAAAGCC  395

seq1  CCAGGCACTGAGCTCAAGAGCTAACGGACCGCGCTGTGGGAGGACACAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCACTGAGCTCAAGAGCTAACGGACCGCGCTGTGGGAGGACACAAG  445

seq1  GACTTGGCACCCAGGTGCTGCCTTTCCACATCACACTGACAAGCCAGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGGCACCCAGGTGCTGCCTTTCCACATCACACTGACAAGCCAGAGC  495

seq1  TTGCTGCTCCCATTCTCCCAGCCTGGGGCCCAGCCACAGGGATGCGGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGCTCCCATTCTCCCAGCCTGGGGCCCAGCCACAGGGATGCGGAGA  545

seq1  GACAGGTTAGGGCCGAGCCTAGAGGCCATCCAGGAAAAGGTAAGGACAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTTAGGGCCGAGCCTAGAGGCCATCCAGGAAAAGGTAAGGACAGC  595

seq1  ACCCTGGTACAGCAGCTAGTGGCTCTGCAATAAACCTCAGAGGGGCACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGTACAGCAGCTAGTGGCTCTGCAATAAACCTCAGAGGGGCACAG  645

seq1  GTACCAGGCCCACCCACCACCCACTGCCTCCACGACACCACACTCTTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAGGCCCACCCACCACCCACTGCCTCCACGACACCACACTCTTACA  695

seq1  GTGAGCTGTGTCCCCTCTGGAAGACATGAGACTCAGCACAGGGACTGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTGTGTCCCCTCTGGAAGACATGAGACTCAGCACAGGGACTGCAT  745

seq1  GTGACCTTGGGTTCTAACTCAAGCACTGAAGTGAGAGGGTGCTTCCTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTTGGGTTCTAACTCAAGCACTGAAGTGAGAGGGTGCTTCCTTTC  795

seq1  AAAAAGGTAGAATTC  815
      |||||||||||||||
seq2  AAAAAGGTAGAATTC  810