BAC Information

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BAC

Clone NameB6Ng01-015P22
Chromosome7 (Build37)
Map Location 30,740,397 - 30,855,359
singlet/doubletdoublet
Overlap geneZfp74, LOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82
Upstream geneActn4, Eif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4, Sipa1l3, LOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik, Zfp84, LOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344, Zfp420, Zfp27
Downstream geneZfp566, Zfp260, Zfp382, Zfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn, Krtdap, Ffar2, Ffar3, Ffar1, Cd22, Mag, Hamp2, Usf2-ps1, Hamp1, Usf2, LOC100043823, Lsr, Tmem162, Fxyd5, Fxyd7, Fxyd1, Lgi4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015P22.bB6Ng01-015P22.g
ACCDH850100DH850101
length932698
definitionDH850100|Mus musculus domesticus DNA, BAC clone: B6Ng01-015P22, 5' end.DH850101|Mus musculus domesticus DNA, BAC clone: B6Ng01-015P22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,740,397 - 30,741,321)(30,854,666 - 30,855,359)
sequence
gaattccatacacaaacacatatccatgattctaacccttcaacgtttgt
ccgactcaatctgacactctccacaaatctaccacagcacatttaaacat
cacaaatatcatatatactgtgaacacaatcaagcacacatgactccaga
aatgtttgcctaacccagcaaatcatgttttccactgttacactccaaga
attgtgtacatacatacacactcagagagttaggtattattctcaaaatc
ttgaaatttttcctgaagaaaaatactatgtgtttgaatgaagtacagag
tcagatgaagacaatacggagggcatggctgagtggcagagtgcttgcct
ggcatgcttgacaacctgggttccatcccacaaaaagatctgtgaaggga
ctagagaaaaggcttagcaaggagctggagggatggctcagtggttaaga
ggagcaccctctgctcttccagaggtcctgagttcaattcccagcaacca
catggtgtctcacaaccatctgtaatggaatccgatgctctcttctggtg
tgtctgaaaacagtgacagtgtactcatatacataaaataaataaatctt
ggaaagaaaggaaggaagaaagaaaaagaaagagaaaagaaaaggctcag
caaattaagagcactctgggaactgatgccccaaagatataggcaaaaat
actcatacacataaaaagtaaaaataattaaaatattttcagtttacttt
atgtgcatgggtgttctgcttgcatttgtgtctgtatacacgtggtttgg
cggtgagaagagacattaggacttgaagctttgtccgtcccactgaactc
caaggtgctatagttcccttctattcaagactacatttcccatgtgcctt
ctgggagcccaggcaacagaggaagcttcccc
gaattcactttgtagaccagactatcctgctctataattctatctcagag
atccatctgcccctgcctcctgagtgctggcttagaggtgtatgccacca
cctcctggctgccatatatactcttaactgttgagccatttctttagtcc
tcattcccaggttttatttttggtttgcttgtttttgttaaggaatgatg
gccaggtaaatggctcagtgggtggaggagcttgctgtccagcctgagag
cttgagtttgatccagcgactcctgcgagttttcctcctatttccacatg
tgtgctgtggcatctgtgtagccacacaccacattcatatacacgcaata
atacaggtaagtaccgagtgacagtccaacgtgtagttacctgaatttgt
aacttagcagtatgaagcaaacacagttctatcttgacacttaaagatat
gtgtcacgagctggagagatgactcaatggttaagcccactgactgctct
tccagaggtcctgagttcaattccctgcaacggtggctcacaccatctgt
gatgggatccctgttgatgctgtattacttagtctctttcctattgaagg
atatctgtttttttacaagtttttttttctgttagggacaatgttttttc
agtgtacccccttgcctgcttgcttgtgtgtgtttgtgtatgtatgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_30740397_30741321
seq2: B6Ng01-015P22.b_47_978

seq1  GAATTCCATACACAAACACATATCCATGATTCTAACCCTTCAACGTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACACAAACACATATCCATGATTCTAACCCTTCAACGTTTGT  50

seq1  CCGACTCAATCTGACACTCTCCACAAATCTACCACAGCACATTTAAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACTCAATCTGACACTCTCCACAAATCTACCACAGCACATTTAAACAT  100

seq1  CACAAATATCATATATACTGTGAACACAATCAAGCACACATGACTCCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATATCATATATACTGTGAACACAATCAAGCACACATGACTCCAGA  150

seq1  AATGTTTGCCTAACCCAGCAAATCATGTTTTCCACTGTTACACTCCAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTGCCTAACCCAGCAAATCATGTTTTCCACTGTTACACTCCAAGA  200

seq1  ATTGTGTACATACATACACACTCAGAGAGTTAGGTATTATTCTCAAAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTACATACATACACACTCAGAGAGTTAGGTATTATTCTCAAAATC  250

seq1  TTGAAATTTTTCCTGAAGAAAAATACTATGTGTTTGAATGAAGTACAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATTTTTCCTGAAGAAAAATACTATGTGTTTGAATGAAGTACAGAG  300

seq1  TCAGATGAAGACAATACGGAGGGCATGGCTGAGTGGCAGAGTGCTTGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGAAGACAATACGGAGGGCATGGCTGAGTGGCAGAGTGCTTGCCT  350

seq1  GGCATGCTTGACAACCTGGGTTCCATCCCACAAAAAGATCTGTGAAGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGCTTGACAACCTGGGTTCCATCCCACAAAAAGATCTGTGAAGGGA  400

seq1  CTAGAGAAAAGGCTTAGCAAGGAGCTGGAGGGATGGCTCAGTGGTTAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAAAGGCTTAGCAAGGAGCTGGAGGGATGGCTCAGTGGTTAAGA  450

seq1  GGAGCACCCTCTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCACCCTCTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCA  500

seq1  CATGGTGTCTCACAACCATCTGTAATGGAATCCGATGCTCTCTTCTGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGTCTCACAACCATCTGTAATGGAATCCGATGCTCTCTTCTGGTG  550

seq1  TGTCTGAAAACAGTGACAGTGTACTCATATACATAAAATAAATAAATCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAAAACAGTGACAGTGTACTCATATACATAAAATAAATAAATCTT  600

seq1  GGAAAGAAAGGAAGGAAGAAAGAAAAAGAAAGAGAAAAGAAAAGGCTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAAAGGAAGGAAGAAAGAAAAAGAAAGAGAAAAGAAAAGGCTCAG  650

seq1  C-AATTAAGAGCACTCTGGGAACTGATGCCCCAAAGATATAGGCAAAAAT  699
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTAAGAGCACTCTGGGAACTGATGCCCCAAAGATATAGGCAAAAAT  700

seq1  ACTCATACACATAAAAAGTAAAAATAATTAAAATATTTTCAGTTTACTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATACACATAAAAAGTAAAAATAATTAAAATATTTTCAGTTTACTTT  750

seq1  ATGTGCATGGGTGTTCTGCTTGCATTTGTGTCTGTATACACGTGGTTTGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCATGGGTGTTCTGCTTGCATTTGTGTCTGTATACACGTGGTTTGG  800

seq1  CGGTGAGAAGAGACATTAGGAC-TGAGGC-TTGTCCGTCCCACTGAACTC  847
      |||||||||||||||||||||| ||| || ||||||||||||||||||||
seq2  CGGTGAGAAGAGACATTAGGACTTGAAGCTTTGTCCGTCCCACTGAACTC  850

seq1  CAAGGTGCTATAG-TCCCTTCTA-TCCAGACTACATTTCCCA-ATGTCCT  894
      ||||||||||||| ||||||||| || |||||||||||||||  || | |
seq2  CAAGGTGCTATAGTTCCCTTCTATTCAAGACTACATTTCCCATGTGCCTT  900

seq1  CTGGGAGCCCAGGCAACAGAGG-AGCTTCCCC  925
      |||||||||||||||||||||| |||||||||
seq2  CTGGGAGCCCAGGCAACAGAGGAAGCTTCCCC  932

seq1: chr7_30854666_30855359
seq2: B6Ng01-015P22.g_71_768 (reverse)

seq1  TACATACATGCACACACACACACAAGCAAGCAGGCAAGGGGGTACACTG-  49
      ||||||||| |||| |||||||||||||||||||||||||||||||||| 
seq2  TACATACATACACAAACACACACAAGCAAGCAGGCAAGGGGGTACACTGA  50

seq1  AAAGACATTGTCCATAACAG--AAAAAAACTTGT-AAAAAACAGATATCC  96
      ||| ||||||||| ||||||  |||||||||||| |||||||||||||||
seq2  AAAAACATTGTCCCTAACAGAAAAAAAAACTTGTAAAAAAACAGATATCC  100

seq1  TTCAATAGGAAAGAGACTAAGTAATACAGCATCAACAGGGATCCCATCAC  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATAGGAAAGAGACTAAGTAATACAGCATCAACAGGGATCCCATCAC  150

seq1  AGATGGTGTGAGCCACCGTTGCAGGGAATTGAACTCAGGACCTCTGGAAG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTGTGAGCCACCGTTGCAGGGAATTGAACTCAGGACCTCTGGAAG  200

seq1  AGCAGTCAGTGGGCTTAACCATTGAGTCATCTCTCCAGCTCGTGACACAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCAGTGGGCTTAACCATTGAGTCATCTCTCCAGCTCGTGACACAT  250

seq1  ATCTTTAAGTGTCAAGATAGAACTGTGTTTGCTTCATACTGCTAAGTTAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAAGTGTCAAGATAGAACTGTGTTTGCTTCATACTGCTAAGTTAC  300

seq1  AAATTCAGGTAACTACACGTTGGACTGTCACTCGGTACTTACCTGTATTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAGGTAACTACACGTTGGACTGTCACTCGGTACTTACCTGTATTA  350

seq1  TTGCGTGTATATGAATGTGGTGTGTGGCTACACAGATGCCACAGCACACA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGTGTATATGAATGTGGTGTGTGGCTACACAGATGCCACAGCACACA  400

seq1  TGTGGAAATAGGAGGAAAACTCGCAGGAGTCGCTGGATCAAACTCAAGCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAATAGGAGGAAAACTCGCAGGAGTCGCTGGATCAAACTCAAGCT  450

seq1  CTCAGGCTGGACAGCAAGCTCCTCCACCCACTGAGCCATTTACCTGGCCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCTGGACAGCAAGCTCCTCCACCCACTGAGCCATTTACCTGGCCA  500

seq1  TCATTCCTTAACAAAAACAAGCAAACCAAAAATAAAACCTGGGAATGAGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCTTAACAAAAACAAGCAAACCAAAAATAAAACCTGGGAATGAGG  550

seq1  ACTAAAGAAATGGCTCAACAGTTAAGAGTATATATGGCAGCCAGGAGGTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGAAATGGCTCAACAGTTAAGAGTATATATGGCAGCCAGGAGGTG  600

seq1  GTGGCATACACCTCTAAGCCAGCACTCAGGAGGCAGGGGCAGATGGATCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATACACCTCTAAGCCAGCACTCAGGAGGCAGGGGCAGATGGATCT  650

seq1  CTGAGATAGAATTATAGAGCAGGATAGTCTGGTCTACAAAGTGAATTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATAGAATTATAGAGCAGGATAGTCTGGTCTACAAAGTGAATTC  698