BAC Information

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BAC

Clone NameB6Ng01-016E10
Chromosome7 (Build37)
Map Location 30,065,872 - 30,245,595
singlet/doubletdoublet
Overlap geneSpint2, Ppp1r14a, Neud4, Sipa1l3
Upstream geneBC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4, C330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4, Eif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b
Downstream geneLOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik, Zfp84, LOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344, Zfp420, Zfp27, Zfp74, LOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82, Zfp566, Zfp260, Zfp382, Zfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016E10.bB6Ng01-016E10.g
ACCDH850289DH850290
length829293
definitionDH850289|Mus musculus domesticus DNA, BAC clone: B6Ng01-016E10, 5' end.DH850290|Mus musculus domesticus DNA, BAC clone: B6Ng01-016E10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,065,872 - 30,066,698)(30,245,303 - 30,245,595)
sequence
gaattctttcaaaagagatcttttcaaagctggctagtggttgtctgaag
cagttaaaagttgtaacgactcctaaagacgcaaaccccagctgctgggt
gccaatactacactcggagaacagacgttcctgcattggcaggcaccttg
gcaaagctcctcccttctaccaaccgctgcttctcttcttcctcgggaga
tcatggggctgttgccatatgtgatatcaacaggtgtccgaagtgcgttt
tccctgtacccaaagcggccaacaggtctcccgaacaaatttccacctct
gaggcttgaatgcgccccccacccccaccccaagtccccgtccccacccc
gggctttctttggccaagcaatttccgcttcgttgagctcctcacccact
tccagtgccacgccttcctgggtcaatacacctcatctccctcccttcct
ccttccttctggaagggacactttgctaacccttacgcccccgcgctcgc
gaggctcctacccttcctagcccgccacctgcaggtctggctccaccgcc
catcctccccaaccccaaggagcctgcgatcactctgcgcaccgagtacc
cccactttcgctgcggcctcctctatcccctgctcccggatcccccgcct
ggccctcaccgtggacgtctagttctcggctggccacctgggccccggag
aggagcagcgaagctaccaaggcgaggagcgcccggccccgccgcagctc
acaaagctgcgccatgacctgctgccagcgccgcgcgccaggcctcgagc
cgccggccgttggggttgtggggggtggg
tgctggggccaggctgggagagctgtggggagtgatggctggactctgaa
gggaagcctgacccagctgagagagctgtggggagtgatggctggactct
gaaggaaaacctgggcctggctgagagagctgtggggagtgatggctgga
ctctgaagggaagcctgggtcctgccaggttcatgggaagtgctatggga
acgtggattgggtcagtggactgggggctaatcacagctgttggggatta
gaagtctggaggagcagagattctgtgggctggagtggggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_30065872_30066698
seq2: B6Ng01-016E10.b_48_876

seq1  GAATTCTTTCAAAAGAGATCTTTTCAAAGCTGGCTAGTGGTTGTCTGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAAAAGAGATCTTTTCAAAGCTGGCTAGTGGTTGTCTGAAG  50

seq1  CAGTTAAAAGTTGTAACGACTCCTAAAGACGCAAACCCCAGCTGCTGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAAAAGTTGTAACGACTCCTAAAGACGCAAACCCCAGCTGCTGGGT  100

seq1  GCCAATACTACACTCGGAGAACAGACGTTCCTGCATTGGCAGGCACCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATACTACACTCGGAGAACAGACGTTCCTGCATTGGCAGGCACCTTG  150

seq1  GCAAAGCTCCTCCCTTCTACCAACCGCTGCTTCTCTTCTTCCTCGGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCTCCTCCCTTCTACCAACCGCTGCTTCTCTTCTTCCTCGGGAGA  200

seq1  TCATGGGGCTGTTGCCATATGTGATATCAACAGGTGTCCGAAGTGCGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGGCTGTTGCCATATGTGATATCAACAGGTGTCCGAAGTGCGTTT  250

seq1  TCCCTGTACCCAAAGCGGCCAACAGGTCTCCCGAACAAATTTCCACCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTACCCAAAGCGGCCAACAGGTCTCCCGAACAAATTTCCACCTCT  300

seq1  GAGGCTTGAATGCGCCCCCCACCCCCACCCCAAGTCCCCGTCCCCACCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTGAATGCGCCCCCCACCCCCACCCCAAGTCCCCGTCCCCACCCC  350

seq1  GGGCTTTCTTTGGCCAAGCAATTTCCGCTTCGTTGAGCTCCTCACCCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTCTTTGGCCAAGCAATTTCCGCTTCGTTGAGCTCCTCACCCACT  400

seq1  TCCAGTGCCACGCCTTCCTGGGTCAATACACCTCATCTCCCTCCCTTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGCCACGCCTTCCTGGGTCAATACACCTCATCTCCCTCCCTTCCT  450

seq1  CCTTCCTTCTGGAAGGGACACTTTGCTAACCCTTACGCCCCCGCGCTCGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTCTGGAAGGGACACTTTGCTAACCCTTACGCCCCCGCGCTCGC  500

seq1  GAGGCTCCTACCCTTCCTAGCCCGCCACCTGCAGGTCTGGCTCCACCGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTCCTACCCTTCCTAGCCCGCCACCTGCAGGTCTGGCTCCACCGCC  550

seq1  CATCCTCCCCAACCCCAAGGAGCCTGCGATCACTCTGCGCACCGAGTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCCCCAACCCCAAGGAGCCTGCGATCACTCTGCGCACCGAGTACC  600

seq1  CCCACTTTCGCTGCGGCCTCCTCTATCCCCTGCTCCCGGATCCCCCGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTTCGCTGCGGCCTCCTCTATCCCCTGCTCCCGGATCCCCCGCCT  650

seq1  GGCCCTCACCGTGGACGTCTAGTTCTCGGCTGGCCACCTGGGCCCCGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTCACCGTGGACGTCTAGTTCTCGGCTGGCCACCTGGGCCCCGGAG  700

seq1  AGGAGCAGCGAAGCTACCAAGGCGAGGAGCGCCCGGCCCCGCCGCAGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCAGCGAAGCTACCAAGGCGAGGAGCGCCCGGCCCCGCCGCAGCTC  750

seq1  ACAAAGCTGCGCCATGACCTGCTGCCAGCGCCGCGCGCCAGGCCTCGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCTGCGCCATGACCTGCTGCCAGCGCCGCGCGCCAGGCCTCGAGC  800

seq1  CGCCGGCCGTTGGGG-TGT-GGGGGTGGG  827
      ||||||||||||||| ||| |||||||||
seq2  CGCCGGCCGTTGGGGTTGTGGGGGGTGGG  829

seq1: chr7_30245303_30245595
seq2: B6Ng01-016E10.g_74_366 (reverse)

seq1  ACCCCCCACTCCAGCCCACAGAATCTCTGCTCCTCCAGACTTCTAATCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCCACTCCAGCCCACAGAATCTCTGCTCCTCCAGACTTCTAATCCC  50

seq1  CAACAGCTGTGATTAGCCCCCAGTCCACTGACCCAATCCACGTTCCCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCTGTGATTAGCCCCCAGTCCACTGACCCAATCCACGTTCCCATA  100

seq1  GCACTTCCCATGAACCTGGCAGGACCCAGGCTTCCCTTCAGAGTCCAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTCCCATGAACCTGGCAGGACCCAGGCTTCCCTTCAGAGTCCAGCC  150

seq1  ATCACTCCCCACAGCTCTCTCAGCCAGGCCCAGGTTTTCCTTCAGAGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTCCCCACAGCTCTCTCAGCCAGGCCCAGGTTTTCCTTCAGAGTCC  200

seq1  AGCCATCACTCCCCACAGCTCTCTCAGCTGGGTCAGGCTTCCCTTCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCACTCCCCACAGCTCTCTCAGCTGGGTCAGGCTTCCCTTCAGAG  250

seq1  TCCAGCCATCACTCCCCACAGCTCTCCCAGCCTGGCCCCAGCA  293
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCATCACTCCCCACAGCTCTCCCAGCCTGGCCCCAGCA  293