BAC Information

Click to search

BAC

Clone NameB6Ng01-016G24
Chromosome7 (Build37)
Map Location 30,096,949 - 30,327,449
singlet/doubletdoublet
Overlap geneNeud4, Sipa1l3, LOC100043791, 4932431P20Rik
Upstream geneTimm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4, C330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4, Eif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a
Downstream gene4930432E11Rik, 1700067C01Rik, Zfp84, LOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344, Zfp420, Zfp27, Zfp74, LOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82, Zfp566, Zfp260, Zfp382, Zfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016G24.bB6Ng01-016G24.g
ACCDH850400DH850401
length1,144527
definitionDH850400|Mus musculus domesticus DNA, BAC clone: B6Ng01-016G24, 5' end.DH850401|Mus musculus domesticus DNA, BAC clone: B6Ng01-016G24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,096,949 - 30,097,941)(30,326,917 - 30,327,449)
sequence
gaattccaggctattctgaactaaataaagagatcgtgtgcaaaaagaga
ttaaaaaaaaaaaatcctaaaccaaaccagctacccagacaacaacatca
gcaacacacacaaacacacacacgcaccatgcacacacatacaaacacac
tcacataaacacacacacttacaaatacacacacatacaaacatgtacac
acacatacaaatacatgtgtacaaatatacactccacatgtacacataaa
cacacatatacatgcacaccacacacaaacacatatacatatacaaacac
acacacatataccattaacacacacatacaaatatacatataccacacat
acagacatacacatacacaaacacacaccacatacacacatacaaacaca
tatacacacacataccacacacacacacacacacacacacacacacacac
acactcacaacctctaataagaacaataaaaaggtgttggaacacagatt
tactcccagcactggagaggcagaggcaagaggatctctgagttcaaggc
cagcctgatctatagagtgagttcgcaggtagctaggactgtgtggagag
accctgtctcaaaacaacaacaagaagaattatcttcataggtgtaccga
gagaaattcaaaggctcaccactagaaactgtgcccagttttagtgggga
agatttcattatcgttgtgtggttctggcacccagaatctcacactcaca
tgacacctgctctgtcactgagccacgcccccagtgctgaaaagaaaaac
tttaatttttttcttcagtttgactttcaagtctaaacgaagaagcccac
taaaggcatgggtagcacatatcccataattcagaagcaggagggccact
gcatgttttaaggccagcctgatctacagagtgaattccaggtcaggcag
ggctacataatgagacctctgtctcaagcaacaacagcacaacgacgaca
actcaaaacccaagatgatgagccttttcttttccctggctttcagctct
tactcctaaccctcttccttacagcatattgcatggaggtctccgcaaac
gccagaaccgcattccttgaagacgaaccatgccgtacgtctgt
accccacaaaccatacaaacatggatctcagttaagcaagaatagtttat
tgaatgcacaacccaagacttattgatcgcagccaccaaaaaaaaaaccc
aaaaacctgggagcataattgtggtaccagtctgttcttatcgcaggctt
ttttataggaaaagccaagttcagaagttcagaaggcaaggctgactaga
caaagaattatcaactagcttttaggctgattggtcctgcatgaggaaag
gagtggtggatgggtggtgaacaggggagtctcggagcactggggtgact
gagcctgagaattacaaccacagagctatgcccttttaggagaagttgtc
agtgtcatctgtgcgtaattccctgagaacctgaactgaatttcatcttc
tgagcaaaatggagactgaatacaaaatggctgcagttatgttcaaagga
gctggcctccacagtagctgagggagggagcctatagcccgtttcccaca
atcccttaactgctactttccagttag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_30096949_30097941
seq2: B6Ng01-016G24.b_43_1186

seq1  GAATTCCAGGCTATTCTGAACTAAATAAAGAGATCGTGTGCAAAAAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCTATTCTGAACTAAATAAAGAGATCGTGTGCAAAAAGAGA  50

seq1  TTAAAAAAAAAAAATCCTAAACCAAACCAGCTACCCAGACAACAACATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAAAAATCCTAAACCAAACCAGCTACCCAGACAACAACATCA  100

seq1  GCAACACACACAAACACACACACGCACCATGCACACACATACAAACACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACACACACAAACACACACACGCACCATGCACACACATACAAACACAC  150

seq1  TCACATAAACACACACACTTACAAATACACACACATACAAACATGTACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATAAACACACACACTTACAAATACACACACATACAAACATGTACAC  200

seq1  ACACATACAAATACATGTGTACAAATATACACTCCACATGTACACATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACAAATACATGTGTACAAATATACACTCCACATGTACACATAAA  250

seq1  CACACATATACATG------------------------------------  264
      ||||||||||||||                                    
seq2  CACACATATACATGCACACCACACACAAACACATATACATATACAAACAC  300

seq1  --------------------------------------------------  264
                                                        
seq2  ACACACATATACCATTAACACACACATACAAATATACATATACCACACAT  350

seq1  --------------------------------------------------  264
                                                        
seq2  ACAGACATACACATACACAAACACACACCACATACACACATACAAACACA  400

seq1  ---------------------CACACACACACACACACACACACACACAC  293
                           |||||||||||||||||||||||||||||
seq2  TATACACACACATACCACACACACACACACACACACACACACACACACAC  450

seq1  ACACTCACAACCTCTAATAAGAACAATAAAAAGGTGTTGGAACACAGATT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCACAACCTCTAATAAGAACAATAAAAAGGTGTTGGAACACAGATT  500

seq1  TACTCCCAGCACTGGAGAGGCAGAGGCAAGAGGATCTCTGAGTTCAAGGC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCCAGCACTGGAGAGGCAGAGGCAAGAGGATCTCTGAGTTCAAGGC  550

seq1  CAGCCTGATCTATAGAGTGAGTTCGCAGGTAGCTAGGACTGTGTGGAGAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGATCTATAGAGTGAGTTCGCAGGTAGCTAGGACTGTGTGGAGAG  600

seq1  ACCCTGTCTCAAAACAACAACAAGAAGAATTATCTTCATAGGTGTACCGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTCTCAAAACAACAACAAGAAGAATTATCTTCATAGGTGTACCGA  650

seq1  GAGAAATTCAAAGGCTCACCACTAGAAACTGTGCCCAGTTTTAGTGGGGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATTCAAAGGCTCACCACTAGAAACTGTGCCCAGTTTTAGTGGGGA  700

seq1  AGATTTCATTATCGTTGTGTGGTTCTGGCACCCAGAATCTCACACTCACA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCATTATCGTTGTGTGGTTCTGGCACCCAGAATCTCACACTCACA  750

seq1  TGACACCTGCTCTGTCACTGAGCCACGCCCCCAGTGCTGAAAAGAAAAAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACCTGCTCTGTCACTGAGCCACGCCCCCAGTGCTGAAAAGAAAAAC  800

seq1  TTTAATTTTTTTCTTCAGTTTGACTTTCAAGTCTAAACGAAGAAGCCCAC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTTTTTCTTCAGTTTGACTTTCAAGTCTAAACGAAGAAGCCCAC  850

seq1  T-AAGGCAT-GGTAGCACATATCCCATAATTCAGAAGCAGGAGGGCCACT  741
      | ||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCATGGGTAGCACATATCCCATAATTCAGAAGCAGGAGGGCCACT  900

seq1  GCATG-TTTAAGGCCAGCCTGATCTACAGAGTGAATTCCAGGTCAGGCAG  790
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTTTAAGGCCAGCCTGATCTACAGAGTGAATTCCAGGTCAGGCAG  950

seq1  GGCTACATAATGAGACC-CTGTCTCAAGCAACAACAGCAACAACGACGAC  839
      ||||||||||||||||| |||||||||||||||||||| |||||||||||
seq2  GGCTACATAATGAGACCTCTGTCTCAAGCAACAACAGC-ACAACGACGAC  999

seq1  AAACTCAAAAACCCCAAGAATGATGAGCCTTT--CTTTCCCTGGCTTTCC  887
       |||||||||  |||||| |||||||||||||   ||||||||||||| |
seq2  -AACTCAAAA--CCCAAG-ATGATGAGCCTTTTCTTTTCCCTGGCTTT-C  1044

seq1  AGCTCCTTACTCCTAACCCTCCTCCCTACAGGCATATGGCATTGGAGGTC  937
      |||| |||||||||||||||| ||| |||| |||||| ||| ||||||||
seq2  AGCT-CTTACTCCTAACCCTCTTCCTTACA-GCATATTGCA-TGGAGGTC  1091

seq1  TCCGCAAACGCCAGGACACCGCATCCCTGGAGGACCGAGACAAGCCGTAC  987
      ||||||||||||||   ||||||| ||| || || |||  || |||||||
seq2  TCCGCAAACGCCAG--AACCGCATTCCTTGAAGA-CGAACCATGCCGTAC  1138

seq1  GTCTGT  993
      ||||||
seq2  GTCTGT  1144

seq1: chr7_30326917_30327449
seq2: B6Ng01-016G24.g_70_602 (reverse)

seq1  CTAACTGGAAAGTAGCAGTTAAGGGATTGTGGGAAACGGGCTATAGGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGGAAAGTAGCAGTTAAGGGATTGTGGGAAACGGGCTATAGGCTC  50

seq1  CCTCCCTCAGCTACTGTGGAGGCCAGCTCCTTTGAACATAACTGCAGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCAGCTACTGTGGAGGCCAGCTCCTTTGAACATAACTGCAGCCA  100

seq1  TTTTGTATTCAGTCTCCATTTTGCTCAGAAGATGAAATTCAGTTCAGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATTCAGTCTCCATTTTGCTCAGAAGATGAAATTCAGTTCAGGTT  150

seq1  CTCAGGGAATTACGCACAGATGACACTGACAACTTCTCCTAAAAGGGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGAATTACGCACAGATGACACTGACAACTTCTCCTAAAAGGGCAT  200

seq1  AGCTCTGTGGTTGTAATTCTCAGGCTCAGTCACCCCAGTGCTCCGAGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGTGGTTGTAATTCTCAGGCTCAGTCACCCCAGTGCTCCGAGACT  250

seq1  CCCCTGTTCACCACCCATCCACCACTCCTTTCCTCATGCAGGACCAATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGTTCACCACCCATCCACCACTCCTTTCCTCATGCAGGACCAATCA  300

seq1  GCCTAAAAGCTAGTTGATAATTCTTTGTCTAGTCAGCCTTGCCTTCTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAAAGCTAGTTGATAATTCTTTGTCTAGTCAGCCTTGCCTTCTGAA  350

seq1  CTTCTGAACTTGGCTTTTCCTATAAAAAAGCCTGCGATAAGAACAGACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAACTTGGCTTTTCCTATAAAAAAGCCTGCGATAAGAACAGACTG  400

seq1  GTACCACAATTATGCTCCCAGGTTTTTGGGTTTTTTTTTTGGTGGCTGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCACAATTATGCTCCCAGGTTTTTGGGTTTTTTTTTTGGTGGCTGCG  450

seq1  ATCAATAAGTCTTGGGTTGTGCATTCAATAAACTATTCTTGCTTAACTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATAAGTCTTGGGTTGTGCATTCAATAAACTATTCTTGCTTAACTGA  500

seq1  GATCCATGTTTGTATGGTTTGTGGGGTGAATTC  533
      |||||||||||||||||||||||||||||||||
seq2  GATCCATGTTTGTATGGTTTGTGGGGTGAATTC  533