BAC Information

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BAC

Clone NameB6Ng01-016M01
Chromosome7 (Build37)
Map Location 6,960,665 - 6,961,181
singlet/doubletsinglet
Overlap genenone
Upstream geneV1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc
Downstream geneLOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636, LOC665485, EG625353, Vmn2r-ps40, Vmn2r36, LOC638170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016M01.bB6Ng01-016M01.g
ACCDH850626DH850627
length1,176953
definitionDH850626|Mus musculus domesticus DNA, BAC clone: B6Ng01-016M01, 5' end.DH850627|Mus musculus domesticus DNA, BAC clone: B6Ng01-016M01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttatctctgtaccccatttttaatagtgttatttgattttctg
aagtccatcttcttgagttctttgtatatattagacattagtaccctatc
gaatttaggattagtaaagatcctttccccatatgctagtgacctttttg
tattgttaacagtgtcttttgccttacagaggctttgcaattttataagg
tcccatttgtcaattcccaatcttacagcacaagccattgctgttctgtt
caggaatttttttccctgtacccatatcttcaagggttttccctcacttt
ctcctctataagtttcagtgtcactattttatgtggagttccttgatcca
cctggacttgagctttgtacaggagataagagtggatcaattcccccctt
ccggtcggcaccagcaccaacgcaccttgggtgcggagtctgcggatacc
cccaaagtccccacaggacactccatgggatcataggacctctggtgagt
ggaacacaacttctgccaggaagcaggtttgaacaccagatatctgggca
ccttccctacaagaggagagcttgcccgcagagagtactctgaccactga
aactcaggagaaatctagtctcctaggtctgctgatagaggctaatatat
tcacctgaggaacaagctctaaccagagacaactataacaaccaactcca
gagattaccagaggcgaaaggcaaacgtaagaatcttactaacagaaacc
aagaccactcaccatgatcagaacgcagcactaccaccgcacccagacct
gagtaccccaacacaccctgaaaagatagtctcggatttaaagcatatct
catgatgatggtagagaacatcaagaaggactttaataactcacttaaag
aacagagaacactgctaaacaggtagaagaccttaagagaagcacaaaag
tcccttaagaattgcagaaacacgaccaacagtatggatgaaaaaaccat
ccagactagaagggaagtagaccataaagaaaccacgctgagaagaacct
tagaggaatctgacatgaatgtgagcatcagcagcgaatcagaattgtag
aagaatccaggtctagattcatgacacatcgtcaacagattcaatgcaat
ctcagttaaaactcaggaatccggaa
gaattctctgtttatacctgtaccaatttttaattgggttacttgggttt
ttgtttgtttgttttgttttgttttttaatatcaaatgcgtggtttcaga
cccttggaaaagagacgaatgcacatattttacatatcaaaacaaaccag
gcctctaggttcttccaacatctcttgcgcgcgctcgactcgaccagcaa
gaacgacgctgcaacaggatccttctgcacacgtttattgggagagcttg
attgcagaggcgaaaagacttcgagcccagaactggtgctgcttttatag
gcctaggaggggcatgtctcatacccggattggttatgcactaagcctca
tttgcatgttcctcatctgattggctactctctctcagtacctcacagag
cctcattatcatatctcatttgcatgtctcacatctgattggctactctc
ttagtaccttacagaacctcattatcatgcctgggccaggcagtgttttt
gcaaaaaactttcctgcatatgtacacattggttgtttatccaatcttat
gtgtggtggccagcagtagtcagtgccactcagcaacggcacatgtggct
tcccacatctccccctgtttgttttaataaaatgaggctggactaggcct
gtgcaattatgcccatccgccgtggctcctgttttaggtcgttcctctaa
tgtcacagccttacccgtcatagggtaaccctatcgccaccgggccccat
gtcttaggttgggactgtgcacgaggaaagttgcccgtctctggataccg
cagtgctgtgtgacaataactgctaaatgacctagggcgaacttctgcaa
aagaggccagccaaaaaatgaattagtggtgaaatcatgatcacttctat
cgcttgcaatgaggaaacctcagtgatgtgcaagggctgatcaatgatcg
ttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_6960665_6961181
seq2: B6Ng01-016M01.g_120_457

seq1  TGTTTGTTTTGTTTTGTTTTCCTTCCTCATAGCTGTTGCCCATGGCATGA  50
      |||||||||||||||||||                               
seq2  TGTTTGTTTTGTTTTGTTT-------------------------------  19

seq1  GAATTACTGTGTTTCTCTGGAAATGGAGGCTCAGAGATGAAGTGAAATAC  100
                 |||                               |||| 
seq2  -----------TTT-------------------------------AATAT  27

seq1  CTAATGTTACACAGCTGTTGAGTGGTAGTTTCAGGAGCTTGGATTGAAAC  150
      | ||||                  || |||||||   ||||||   ||| 
seq2  CAAATG-----------------CGTGGTTTCAGACCCTTGGA---AAA-  56

seq1  TCTAGGCTTCTTGACTTCAGAACTGAGGCGTTTGGCAGCATTCAGCAAGG  200
         || |     || | || |  |      |||     |||  | ||   
seq2  --GAGAC-----GAATGCACATAT------TTT----ACAT--ATCA---  84

seq1  GAAGGAAACTAGCTGGACCAGTGAAGCTCAAGAAATGATGTTTTTAAGGT  250
           |||| |     |||||    ||                |  ||||
seq2  -----AAACAA-----ACCAG----GC---------------CTCTAGGT  105

seq1  TATTATTGGTTTTGGTCCCATCATCATTATTTTGTCATGCCTGTGACTCT  300
      | ||             ||| |||                      ||||
seq2  TCTT-------------CCAACAT----------------------CTCT  120

seq1  TGCGCGCGCTCGACT-GGCCAGGAAGAACAACGCTGCAACAGGATCCTTC  349
      ||||||||||||||| | |||| |||||| ||||||||||||||||||||
seq2  TGCGCGCGCTCGACTCGACCAGCAAGAACGACGCTGCAACAGGATCCTTC  170

seq1  TGCACACGATTATTGGGAGAGCTTGATTGTAGAGGCGAAAAGACCTCGAG  399
      |||||||| |||||||||||||||||||| |||||||||||||| |||||
seq2  TGCACACGTTTATTGGGAGAGCTTGATTGCAGAGGCGAAAAGACTTCGAG  220

seq1  CCCAGAACTGGTGCTGCTTTTATAGGCCTAGGAGGGGTGTGTCTCACACC  449
      |||||||||||||||||||||||||||||||||||||  ||||||| |||
seq2  CCCAGAACTGGTGCTGCTTTTATAGGCCTAGGAGGGGCATGTCTCATACC  270

seq1  CGGATTGGTTATGTACTAAGCCTCATTTGCATGTTCCTCATCTGATTGGC  499
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CGGATTGGTTATGCACTAAGCCTCATTTGCATGTTCCTCATCTGATTGGC  320

seq1  TACTCTCTCTCAGTACCT  517
      ||||||||||||||||||
seq2  TACTCTCTCTCAGTACCT  338