BAC Information

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BAC

Clone NameB6Ng01-016M18
Chromosome7 (Build37)
Map Location 72,809,540 - 72,810,697
singlet/doubletsinglet
Overlap geneTarsl2
Upstream geneApba2, 5730507A09Rik, Ndnl2, Tjp1, Gm1693, EG665234
Downstream geneTm2d3, LOC665241, Pcsk6, Snrpa1, H47, Chsy1, Lrrk1, Aldh1a3, Asb7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016M18.bB6Ng01-016M18.g
ACCDH850657DH850658
length1,159526
definitionDH850657|Mus musculus domesticus DNA, BAC clone: B6Ng01-016M18, 5' end.DH850658|Mus musculus domesticus DNA, BAC clone: B6Ng01-016M18, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtcatgaaggtaagtctggagagagggacaagagtcaatttac
tgcaccaactggaacctctgcaaataagccacagggagcgcagcagcctt
tggagagcatctgtgaacatcaggacatagaactcaggcagcaaaacaag
cacaccgcccctcacctgctagtggctgcgttctgaggaacgcactgagg
agcattagagtccccacacaaactaaggaaaccacaggagcggaacccta
tgggaccatgaggctgcccactatagcctagacaacatactcttaagagt
ttactatagatccatagtctgctgttgactgaaacaccacacaattacag
ttacacacgacaaggctgtaacggtcacaggaaagactaaacagttccag
cagttgaagtggcccacctctgaacagcatcttcatgctaaccctgcaac
actacacacgtttaagcatgggcgtcagacacagctacactctactcctg
gagatgttgagtatctggtcgctctgtagtgagcacaaggcagcagagcc
atcagccatctttgagaagcagtgcccctgagagcagcattctctgtcac
agaagagctacactcggcagatggttaaggctccgcatccttagagactt
aacgcctgcgttttatgaaattcaagaaagcaaaccaactccatgtcgtt
agccttttgtttttagttccaaaattctgatattactaaaacttaaggga
aacactattgtttatgagcaaagatggtaagatgcagaaagtagacaaat
aagaataaaacggtttttaggaaggaacttactcgtatgaaatccataag
cgcattgtaaatgaacgctcctctcgggaggaaaaacagcttccagggct
cagatcatggaagaagaaagttcttgttcctagatggaaacaatgattgt
atttcaaacttcatctctgcttatgtgtaccatacctgaagtgacagtca
taaaatatcactctatccccctctcatctatcactaggcatcctcagtcc
ctcagtgtcctgtttagatctccggtgtatataaaatgaccgcgcacacg
taaatatttacctcataactatggataacttagcctggaactttggcttt
ccggttatc
atcaggtgtaaacatgtcatgtgcctgggaaggaatatgaccatcagtgc
tggtcccttgaaacagaaggcgccaccattaactgaaccgagactcacat
ctgcctctattaggaaatttggtgttcggagttaatcagatgctcacatt
accatttaattgaacatgaactcgactgtcatagaaatttacttcaacag
tctatctgatgtttttcctttctgcttgtatagtgtgtgatgtgatgtga
tgtgatgtgatgtgatgtgatgtgaagggagggaaatgttgtgccaaatt
gtcggatacaaggacctcaatgtgtttatcaggactgtcagatggcccct
tacctaccgagacactcgatgggccttaaatttgggatgtagaacaaacg
gatggtccacaacctatggtccactcaaaaaaaaaaagttatgcccaata
ctccagtcccctataagctagttcagcggccagaatccaaaaaatcatac
acggttcctgaagtgaatgttaatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_72809540_72810697
seq2: B6Ng01-016M18.b_49_1207 (reverse)

seq1  GATAACAGAAAAGCC-AAGTTCAAGGCTAAGTAAT-CATAAGTATGAGTA  48
      |||||| | |||||| |||||| ||||||||| || ||||  ||||||  
seq2  GATAACCGGAAAGCCAAAGTTCCAGGCTAAGTTATCCATAGTTATGAGGT  50

seq1  ATAATTTTACGTGT--GCCGTCATATTATATACACTGTAGATCTAAACA-  95
      | |  |||||||||  || ||||| |||||||||| | ||||||||||| 
seq2  AAATATTTACGTGTGCGCGGTCATTTTATATACACCGGAGATCTAAACAG  100

seq1  GACACTGAGGGACTGAGGATGCCTAGTGATAGATGAGAGGGGGATAGAGT  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGAGGGACTGAGGATGCCTAGTGATAGATGAGAGGGGGATAGAGT  150

seq1  GATATTTTATGACTGTCACTTCAGGTATGGTACACATTAAGCAAGAGATG  195
      |||||||||||||||||||||||||||||||||||| ||||| |||||||
seq2  GATATTTTATGACTGTCACTTCAGGTATGGTACACA-TAAGC-AGAGATG  198

seq1  AAGTTTGAAATACAATCATTGTTTCCATCTAGGAACAAGAACTTTTCTTC  245
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAGTTTGAAATACAATCATTGTTTCCATCTAGGAACAAGAAC-TTTCTTC  247

seq1  TTCCATGATCTGAGCCCTGGAAGCTGTTTTTTCCTCCCGAGAGGAGCGTT  295
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTCCATGATCTGAGCCCTGGAAGCTG-TTTTTCCTCCCGAGAGGAGCGTT  296

seq1  CATTTACAATGCGCTTATGGATTTCATACGAGTAAGTTCCTTCCTAAAAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACAATGCGCTTATGGATTTCATACGAGTAAGTTCCTTCCTAAAAA  346

seq1  CCGTTTTATTCTTATTTGTCTACTTTCTGCATCTTACCATCTTTGCTCAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTTTATTCTTATTTGTCTACTTTCTGCATCTTACCATCTTTGCTCAT  396

seq1  AAACAATAGTGTTTCCCTTAAGTTTTAGTAATATCAGAATTTTGGAACTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATAGTGTTTCCCTTAAGTTTTAGTAATATCAGAATTTTGGAACTA  446

seq1  AAAACAAAAGGCTAACGACATGGAGTTGGTTTGCTTTCTTGAATTTCATA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAGGCTAACGACATGGAGTTGGTTTGCTTTCTTGAATTTCATA  496

seq1  AAACGCAGGCGTTAAGTCTCTAAGGATGCGGAGCCTTAACCATCTGCCGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCAGGCGTTAAGTCTCTAAGGATGCGGAGCCTTAACCATCTGCCGA  546

seq1  GTGTAGCTCTTCTGTGACAGAGAATGCTGCTCTCAGGGGCACTGCTTCTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCTCTTCTGTGACAGAGAATGCTGCTCTCAGGGGCACTGCTTCTC  596

seq1  AAAGATGGCTGATGGCTCTGCTGCCTTGTGCTCACTACAGAGCGACCAGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGGCTGATGGCTCTGCTGCCTTGTGCTCACTACAGAGCGACCAGA  646

seq1  TACTCAACATCTCCAGGAGTAGAGTGTAGCTGTGTCTGACGCCCATGCTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAACATCTCCAGGAGTAGAGTGTAGCTGTGTCTGACGCCCATGCTT  696

seq1  AAACGTGTGTAGTGTTGCAGGGTTAGCATGAAGATGCTGTTCAGAGGTGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTGTGTAGTGTTGCAGGGTTAGCATGAAGATGCTGTTCAGAGGTGG  746

seq1  GCCACTTCAACTGCTGGAACTGTTTAGTCTTTCCTGTGACCGTTACAGCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTTCAACTGCTGGAACTGTTTAGTCTTTCCTGTGACCGTTACAGCC  796

seq1  TTGTCGTGTGTAACTGTAATTGTGTGGTGTTTCAGTCAACAGCAGACTAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCGTGTGTAACTGTAATTGTGTGGTGTTTCAGTCAACAGCAGACTAT  846

seq1  GGATCTATAGTAAACTCTTAAGAGTATGTTGTCTAGGCTATAGTGGGCAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTATAGTAAACTCTTAAGAGTATGTTGTCTAGGCTATAGTGGGCAG  896

seq1  CCTCATGGTCCCATAGGGTTCCGCTCCTGTGGTTTCCTTAGTTTGTGTGG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGGTCCCATAGGGTTCCGCTCCTGTGGTTTCCTTAGTTTGTGTGG  946

seq1  GGACTCTAATGCTCCTCAGTGCGTTCCTCAGAACGCAGCCACTAGCAGGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTAATGCTCCTCAGTGCGTTCCTCAGAACGCAGCCACTAGCAGGT  996

seq1  GAGGGGCGGTGTGCTTGTTTTGCTGCCTGAGTTCTATGTCCTGATGTTCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGCGGTGTGCTTGTTTTGCTGCCTGAGTTCTATGTCCTGATGTTCA  1046

seq1  CAGATGCTCTCCAAAGGCTGCTGCGCTCCCTGTGGCTTATTTGCAGAGGT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCTCTCCAAAGGCTGCTGCGCTCCCTGTGGCTTATTTGCAGAGGT  1096

seq1  TCCAGTTGGTGCAGTAAATTGACTCTTGTCCCTCTCTCCAGACTTACCTT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTGGTGCAGTAAATTGACTCTTGTCCCTCTCTCCAGACTTACCTT  1146

seq1  CATGACTGAATTC  1158
      |||||||||||||
seq2  CATGACTGAATTC  1159