BAC Information

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BAC

Clone NameB6Ng01-017F13
Chromosome7 (Build37)
Map Location 19,788,526 - 19,938,241
singlet/doubletdoublet
Overlap geneEml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1
Upstream geneLOC671190, Mill1, Psg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr
Downstream geneCd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017F13.bB6Ng01-017F13.g
ACCDH851057DH851058
length885175
definitionDH851057|Mus musculus domesticus DNA, BAC clone: B6Ng01-017F13, 5' end.DH851058|Mus musculus domesticus DNA, BAC clone: B6Ng01-017F13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,788,526 - 19,789,415)(19,938,067 - 19,938,241)
sequence
gaattcactctataactgtttggatggtactagcagaagaggaagaactg
agggaaattacctctaaagtccctcagagcttaaaatgaaactaaattca
tgggaggcacctgactcagagagctccacgccaaagcccctctaagttac
ctgttccctcaggtccccaagccattgtcactagctgcatgagcaccatt
ggcctaggtggtgctggaatatagtggtgatcatgacagtctcaggtctg
cttttctggagctcgcggtcaagtgaggacagtaagctctctccaaacag
tgtgacccacatagggagtagctgagaaaggtgaagtagcactagagaag
gggtattgggccaactctttgaagaagttagggaggacctcctggaatga
gagctatttaagctggggtgtggaggatcaagccacaccccccagcccct
cactgtgggggttctaggcagggactccgccattgaactataactcccgc
tttttccttcctttcttccttccttccttccttccttccttcctttcttt
ctttctttctttctttctttctttctttctttctttctttctttctttct
ttctttcaactttttgagacacccctccataagttacccaaggaggtctt
caactttttttcttttccttccactatgcctggcttccaagcacattttt
atcatttctcttgtcgtgtctacagggatttggcccgagggagcagatgg
cacagacatcaatgctgtggcccgctctcatgatgggaagttgctggttt
ctgctgacgactttggcaagtgcacctgttcagctaccctgctgtcatcg
agatgagtctctctggagagcctctggtgtgggat
tttcagttgttgaatctaacctggatatatctggcctctagtctcattag
cccaggctggccttggacttcccagggctgtgattataggcttgtgtcac
catgcttggcttaggaaccactaccactacaaaggctgccttggctggtg
cagggcatgggggtgagggtggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_19788526_19789415
seq2: B6Ng01-017F13.b_47_931

seq1  GAATTCACTCTATAACTGTTTGGATGGTACTAGCAGAAGAGGAAGAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTATAACTGTTTGGATGGTACTAGCAGAAGAGGAAGAACTG  50

seq1  AGGGAAATTACCTCTAAAGTCCCTCAGAGCTTAAAATGAAACTAAATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAATTACCTCTAAAGTCCCTCAGAGCTTAAAATGAAACTAAATTCA  100

seq1  TGGGAGGCACCTGACTCAGAGAGCTCCACGCCAAAGCCCCTCTAAGTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGCACCTGACTCAGAGAGCTCCACGCCAAAGCCCCTCTAAGTTAC  150

seq1  CTGTTCCCTCAGGTCCCCAAGCCATTGTCACTAGCTGCATGAGCACCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCCTCAGGTCCCCAAGCCATTGTCACTAGCTGCATGAGCACCATT  200

seq1  GGCCTAGGTGGTGCTGGAATATAGTGGTGATCATGACAGTCTCAGGTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAGGTGGTGCTGGAATATAGTGGTGATCATGACAGTCTCAGGTCTG  250

seq1  CTTTTCTGGAGCTCGCGGTCAAGTGAGGACAGTAAGCTCTCTCCAAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTGGAGCTCGCGGTCAAGTGAGGACAGTAAGCTCTCTCCAAACAG  300

seq1  TGTGACCCACATAGGGAGTAGCTGAGAAAGGTGAAGTAGCACTAGAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCCACATAGGGAGTAGCTGAGAAAGGTGAAGTAGCACTAGAGAAG  350

seq1  GGGTATTGGGCCAACTCTTTGAAGAAGTTAGGGAGGACCTCCTGGAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATTGGGCCAACTCTTTGAAGAAGTTAGGGAGGACCTCCTGGAATGA  400

seq1  GAGCTATTTAAGCTGGGGTGTGGAGGATCAAGCCACACCCCCCAGCCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTATTTAAGCTGGGGTGTGGAGGATCAAGCCACACCCCCCAGCCCCT  450

seq1  CACTGTGGGGGTTCTAGGCAGGGACTCCGCCATTGAACTATAACTCCCGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGGGGGTTCTAGGCAGGGACTCCGCCATTGAACTATAACTCCCGC  500

seq1  TTTTTCCTTCCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTTCCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTT  550

seq1  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  600

seq1  TTCTTTCAACTTTTTGAGACACCCCTCCATAAGTTACCCAAGGAGGTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCAACTTTTTGAGACACCCCTCCATAAGTTACCCAAGGAGGTCTT  650

seq1  CAACTTTTTTTCTTTTCCTTCCACTATGCCTGGCTTCCAAGCACATTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTTTTTCTTTTCCTTCCACTATGCCTGGCTTCCAAGCACATTTTT  700

seq1  ATCATTTCTCTTGTCGTGTCTACAGGGATTTGGCCCGAGGGAGCAGATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTCTCTTGTCGTGTCTACAGGGATTTGGCCCGAGGGAGCAGATGG  750

seq1  CACAGACATCAATGCTGTGGCCCGCTCTCATGATGGGAAGTTGCTGGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACATCAATGCTGTGGCCCGCTCTCATGATGGGAAGTTGCTGGTTT  800

seq1  CTGCTGACGACTTTGGCAAAGTGCACCTGTTCAGCTACCCCTGCTGTCAG  850
      ||||||||||||||||| ||||||||||||||||||| ||||||||||| 
seq2  CTGCTGACGACTTTGGC-AAGTGCACCTGTTCAGCTA-CCCTGCTGTCA-  847

seq1  CCGAGAGTGAGTCTCTCTGGAGAGCCTAAGGGTGTGGGAT  890
       ||||| ||||||||||||||||||||   ||||||||||
seq2  TCGAGA-TGAGTCTCTCTGGAGAGCCT-CTGGTGTGGGAT  885

seq1: chr7_19938067_19938241
seq2: B6Ng01-017F13.g_74_248 (reverse)

seq1  CCTCCACCCTCACCCCCATGCCCTGCACCAGCCAAGGCAGCCTTTGTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCACCCTCACCCCCATGCCCTGCACCAGCCAAGGCAGCCTTTGTAGT  50

seq1  GGTAGTGGTTCCTAAGCCAAGCATGGTGACACAAGCCTATAATCACAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTGGTTCCTAAGCCAAGCATGGTGACACAAGCCTATAATCACAGCC  100

seq1  CTGGGAAGTCCAAGGCCAGCCTGGGCTAATGAGACTAGAGGCCAGATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAGTCCAAGGCCAGCCTGGGCTAATGAGACTAGAGGCCAGATATA  150

seq1  TCCAGGTTAGATTCAACAACTGAAA  175
      |||||||||||||||||||||||||
seq2  TCCAGGTTAGATTCAACAACTGAAA  175