BAC Information

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BAC

Clone NameB6Ng01-018D06
Chromosome7 (Build37)16 (Build37)
Map Location 109,808,625 - 109,809,04255,928,321 - 55,928,993
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneClpb, Phox2a, Inppl1, Folr2, Folr1, 3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1, Il18bp, Rnf121, Trpc2, Art5, Art1, Chrna10, Nup98, Frag1, Rhog, Stim1, Rrm1, Olfr543, Olfr544, Olfr545, LOC667284, Olfr547, Olfr548-ps1, Olfr549, Trim21, LOC384699, Olfr550, Olfr551, Olfr552, Olfr553, Olfr554, LOC100040840, Olfr555
Downstream geneOlfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a, LOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609, Olfr610, Olfr611, EG545985, Olfr614, Olfr615, Olfr616, LOC100042167, Olfr617, Olfr618, Olfr619, Olfr620, LOC667639, Olfr622, Olfr623
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018D06.bB6Ng01-018D06.g
ACCDH851671DH851672
length207776
definitionDH851671|Mus musculus domesticus DNA, BAC clone: B6Ng01-018D06, 5' end.DH851672|Mus musculus domesticus DNA, BAC clone: B6Ng01-018D06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(109,808,625 - 109,809,042)(55,928,321 - 55,928,993)
sequence
agtcttggtgctggagagatgactcagaggttaagagcactgactgctct
tccaaaggtcctgagttcaaatcccagcaaccacatggtggctcataacc
atctgaaatgagatctgacgccctcttctggtgtgtctgaagacagctac
agtgtatttccatataataagtaaaataaatattaaaaaaaaaaaaaaag
aattcag
gaattcccttgtggtcatgtaaacccagtccaaagcctgcggcagggata
gcatgagcctagaacaaagctccggatggcttttgctaatggatagactg
gacctatcacgcagtcttctgactgactgcatattcttcacccccagaac
aatgctgcagtcagcggtattcagagaagcatcttttgcagtggttggta
gtgactgcaaagactcagaagtggtcacagtgctggaaataaatatctgc
taaacgccagccataaatgggacatctaaaacatcccctccgaggctcca
ggagggcagtggaagaagactagaaagaatgtaaaggcaggaggaaagag
ggagagagatctggaaaagtgacttctgagtatcacatggttgctgtgct
cttgaactcaaagcagcaacctccataagcttgagctcctccacaagctt
gaggtggggagaggatcgtggaaggccctaccttccaaggattaatcccg
cggattaacagacagcggtggacagacaagggaaagacactctcttcaga
ggagtagccacgggtaaggtgtctatgcccctgtaaacggattctcacgc
atgtccctcatgaaattcacttggtcccaaaagaaaggtgggggagaagg
aagaggaggcggaggaggagaaaaagaagacatgagaaaaaacagctcgg
ccacttgagattaaatgggattaaaatggagtgaagaaaacaagagtggt
aatgcaggtgaatatgatatatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_109808625_109809042
seq2: B6Ng01-018D06.b_67_260 (reverse)

seq1  CTGAATTCTTTTTTTTTTTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTA  50
                                                        
seq2  --------------------------------------------------  0

seq1  TAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAAAGGTGTGCGCCAC  100
                                                        
seq2  --------------------------------------------------  0

seq1  CACGCTCAGCTTTACATGTGTGATTCTTAATATGTGCCTTCTTTAGTGGT  150
                                                        
seq2  --------------------------------------------------  0

seq1  ATCTCTTCTTTTTATATATAGCATATTTCTAGATTTTCTATCACAAACTT  200
                                                        
seq2  --------------------------------------------------  0

seq1  AGGGCAGTAGTACATGTCCCATTTCTTCTCTCTCTCTCTCTCTCTCTTTA  250
                       |  | |||||         | | | | | ||||
seq2  -----------------CTGAATTCTT---------TTTTTTTTTTTTTA  24

seq1  AAGGATTTA-TTTATTTATTTTATGTGAGTCCA---TCACTGTCTTCAGA  296
      |   ||||| |||| ||||| ||||  | | ||   |  |||||||||||
seq2  A--TATTTATTTTACTTATTATATGGAAATACACTGTAGCTGTCTTCAGA  72

seq1  CACACCAGAAGAGGTCATCAGATCCCATTACAGATGGTTGTGAGCCACCA  346
      |||||||||||||| | ||||||| |||| ||||||||| ||||||||||
seq2  CACACCAGAAGAGGGCGTCAGATCTCATTTCAGATGGTTATGAGCCACCA  122

seq1  TGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGAGCAGTCGGTGCT  396
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGAGCAGTCAGTGCT  172

seq1  CTTAACCTCTGAGCCATCTCTC  418
      ||||||||||||| ||||||||
seq2  CTTAACCTCTGAGTCATCTCTC  194

seq1: chr16_55928321_55928993
seq2: B6Ng01-018D06.g_176_845

seq1  TCACGCAGTCTTCTGACTGACTGCATATTCTTCACCCCCAGAACAATGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGCAGTCTTCTGACTGACTGCATATTCTTCACCCCCAGAACAATGCT  50

seq1  GCAGTCAGCGGTATTCAGAGAAGCATCTTTTGCAGTGGTTGGTAGTGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCAGCGGTATTCAGAGAAGCATCTTTTGCAGTGGTTGGTAGTGACT  100

seq1  GCAAAGACTCAGAAGTGGTCACAGTGCTGGAAATAAATATCTGCTAAACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGACTCAGAAGTGGTCACAGTGCTGGAAATAAATATCTGCTAAACG  150

seq1  CCAGCCATAAATGGGACATCTAAAACATCCCCTCCGAGGCTCCAGGAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCATAAATGGGACATCTAAAACATCCCCTCCGAGGCTCCAGGAGGG  200

seq1  CAGTGGAAGAAGACTAGAAAGAATGTAAAGGCAGGAGGAAAGAGGGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAAGAAGACTAGAAAGAATGTAAAGGCAGGAGGAAAGAGGGAGAG  250

seq1  AGATCTGGAAAAGTGACTTCTGAGTATCACATGGTTGCTGTGCTCTTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGGAAAAGTGACTTCTGAGTATCACATGGTTGCTGTGCTCTTGAA  300

seq1  CTCAAAGCAGCAACCTCCATAAGCTTGAGCTCCTCCACAAGCTTGAGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGCAGCAACCTCCATAAGCTTGAGCTCCTCCACAAGCTTGAGGTG  350

seq1  GGGAGAGGATCGTGGAAGGCCCTACCTTCCAAGGATTAATCCCGCGGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGGATCGTGGAAGGCCCTACCTTCCAAGGATTAATCCCGCGGATT  400

seq1  AACAGACAGCGGTGGACAGACAAGGGAAAGACACTCTCTTCAGAGGAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACAGCGGTGGACAGACAAGGGAAAGACACTCTCTTCAGAGGAGTA  450

seq1  GCCACGGGTAAGGTGTCTATGCCCCTGTAAACGGATTCTCACGCATGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACGGGTAAGGTGTCTATGCCCCTGTAAACGGATTCTCACGCATGTCC  500

seq1  CTCATGAAATTCACTTGGTCCCAAAAGAAAGGTGGGGGAGAAGGAAGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGAAATTCACTTGGTCCCAAAAGAAAGGTGGGGGAGAAGGAAGAGG  550

seq1  AGGCGGAGGAGGAGAAAAAGAAGACATGAG-AAAAACAGCACAGGCCACT  599
      |||||||||||||||||||||||||||||| ||||||||| | |||||||
seq2  AGGCGGAGGAGGAGAAAAAGAAGACATGAGAAAAAACAGCTC-GGCCACT  599

seq1  TGAGATTAAATGGGATT-AAAGGGAGTGGAAGAAAACAAGAGCGGGTAAT  648
      ||||||||||||||||| ||| ||||| ||||||||||||||  ||||||
seq2  TGAGATTAAATGGGATTAAAATGGAGT-GAAGAAAACAAGAG-TGGTAAT  647

seq1  GCAGGTGAATATGATAGACATATAT  673
      |||||||||||||||| | ||||  
seq2  GCAGGTGAATATGATATATATAT--  670