BAC Information

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BAC

Clone NameB6Ng01-020D14
Chromosome7 (Build37)
Map Location 27,171,622 - 27,347,641
singlet/doubletdoublet
Overlap geneNlrp9c, LOC100043195, Nlrp4a, Nlrp9a
Upstream geneLipe, BC024561, LOC434148, Ceacam1, Ceacam2, LOC100043722, EG632778, 2310004L02Rik, B3gnt8, Bckdha, Exosc5, A830041P22Rik, BC028440, Tgfb1, Ccdc97, Hnrpul1, Axl, LOC667950, Cyp2s1, LOC100043732, EG623475, Cyp2b10, LOC232993, EG667957, BC026762, Cyp2b13, EG668047, LOC623532, Cyp2b9, LOC667968, Cyp2a4
Downstream geneV1re12, EG243881, LOC623830, Cyp2b19, Cyp2g1, LOC100043745, Cyp2a5, EG233005, EG330491, Cyp2a12, LOC100043199, Cyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020D14.bB6Ng01-020D14.g
ACCDH853083DH853084
length968905
definitionDH853083|Mus musculus domesticus DNA, BAC clone: B6Ng01-020D14, 5' end.DH853084|Mus musculus domesticus DNA, BAC clone: B6Ng01-020D14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,346,674 - 27,347,641)(27,171,622 - 27,172,261)
sequence
gaattcacttacaacagctcctccactccacatgttgaaaatttcagagc
tgagcacagcctctcaactgcatcattagagagattagtgccatacaggt
tcatgtatttcaggtgaggtaggtgaagaaatgtgcaaaataataaacca
tctccaaagttagtcgtgaaggaacacctgcaggataaagaccaattgtc
atattataccaagatgtgtgggtccatggcagagcaacttacataatcct
ttcccaggctttgttttacaccatgtgggttttgggcatcctggttctct
ccagataccagacaatcactaaggctcaagctactcagatctttccattt
attccacttccctcacccacctacatctgtgtaacacctagaatattata
aggagactcatggttatcttcatattaagctctacattgccttgtcacag
ctaaatatggttgccatctcgtattattttggtaaagggaacctgaatgg
aacaattgcctccatcagattggcatgtctgtggagcatgtcattgatca
gtaatcagggtagtacatagttgtgaggggcattacccctgggaaattaa
gtctaatatgaataagaaaggttgtgggggcaggtcatgggaagtcaagc
cagaaaacagcattcttttctgatctctgcttcagttcttgctttcaagg
tcctgtcctgactgcccttggtgataatttatgacaaaggagtgttaaaa
aaataagcattattctccccaagactgccatttatcacggtgtttatcat
agaaacagaaaacaaagcagaattatattgtatataaaatacaaatactt
aagtttgtattaatattcccagccatatatcccaaaagaatggcccattt
ctctttaagtactagttttccctttctctccctctctctctctctctctc
tctctctctctctctctc
gaattctgtgtatttatcgcatttcaaatttacaaaggggcatggtacct
cccaggaaaaaaatctgtaagtatttcatttttacatgtttttatgaggt
acgactcagattgtttctatttagtctaaaattttcctaacttgtagcct
ccctcagccctgaagcaggctgatccagactttgaccttgctgctactaa
ggagattacctagggtggaaccttccaacctagatggctcttttgttctg
tcacctgccactgctctctgcaagacactgctatctgctgagaagcacct
gagatattccagaggaatatcctatcctgcatgtcgcgtacaggctggct
ccagacaccaagaatggactggcaggggatggatgggccttccccccctt
gtaagcacactctcttagtaaactggcgggccttgaacagaatcatgtct
tggtctccaataatctctcaccgtctaagtctctttcagccccagcctgc
ctcccaggagtacccggttcaagtaggtcacaggctgccatacaacagat
tggcgtctgagccagggaccttgggaatggcgggaaaacactgagggaat
tgctgtcttgtatggagctccaagggaaggaaagaatcagagatcgtatt
ggcatggtgagcaacaggtattacgctagcgctggctttaaacttcattt
ttaaaaaaaagtgttgctggaggtacggaaggatacgggctaagtttgga
acagtgctaacccggcactttttccatttaggatttgacagtgaaatatg
tgtaggactagaaactgtgatcagtagttgtctgcagcttttaaaagctg
tttcagcgagaggatagggttaaatgatgaatcagcagttgttcacatcg
agaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_27346674_27347641
seq2: B6Ng01-020D14.b_29_996 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAAAGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAAAGGGA  50

seq1  AAACTAGTACTTAAAGAGAAATGGGCCATTCTTTTGGGATATATGGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGTACTTAAAGAGAAATGGGCCATTCTTTTGGGATATATGGCTGG  100

seq1  GAATATTAATACAAACTTAAGTATTTGTATTTTATATACAATATAATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTAATACAAACTTAAGTATTTGTATTTTATATACAATATAATTCT  150

seq1  GCTTTGTTTTCTGTTTCTATGATAAACACCGTGATAAATGGCAGTCTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTTTTCTGTTTCTATGATAAACACCGTGATAAATGGCAGTCTTGG  200

seq1  GGAGAATAATGCTTATTTTTTTAACACTCCTTTGTCATAAATTATCACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATAATGCTTATTTTTTTAACACTCCTTTGTCATAAATTATCACCA  250

seq1  AGGGCAGTCAGGACAGGACCTTGAAAGCAAGAACTGAAGCAGAGATCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGTCAGGACAGGACCTTGAAAGCAAGAACTGAAGCAGAGATCAGA  300

seq1  AAAGAATGCTGTTTTCTGGCTTGACTTCCCATGACCTGCCCCCACAACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATGCTGTTTTCTGGCTTGACTTCCCATGACCTGCCCCCACAACCT  350

seq1  TTCTTATTCATATTAGACTTAATTTCCCAGGGGTAATGCCCCTCACAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATTCATATTAGACTTAATTTCCCAGGGGTAATGCCCCTCACAACT  400

seq1  ATGTACTACCCTGATTACTGATCAATGACATGCTCCACAGACATGCCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTACCCTGATTACTGATCAATGACATGCTCCACAGACATGCCAAT  450

seq1  CTGATGGAGGCAATTGTTCCATTCAGGTTCCCTTTACCAAAATAATACGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGAGGCAATTGTTCCATTCAGGTTCCCTTTACCAAAATAATACGA  500

seq1  GATGGCAACCATATTTAGCTGTGACAAGGCAATGTAGAGCTTAATATGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCAACCATATTTAGCTGTGACAAGGCAATGTAGAGCTTAATATGAA  550

seq1  GATAACCATGAGTCTCCTTATAATATTCTAGGTGTTACACAGATGTAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACCATGAGTCTCCTTATAATATTCTAGGTGTTACACAGATGTAGGT  600

seq1  GGGTGAGGGAAGTGGAATAAATGGAAAGATCTGAGTAGCTTGAGCCTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAGGGAAGTGGAATAAATGGAAAGATCTGAGTAGCTTGAGCCTTAG  650

seq1  TGATTGTCTGGTATCTGGAGAGAACCAGGATGCCCAAAACCCACATGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGTCTGGTATCTGGAGAGAACCAGGATGCCCAAAACCCACATGGTG  700

seq1  TAAAACAAAGCCTGGGAAAGGATTATGTAAGTTGCTCTGCCATGGACCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAAAGCCTGGGAAAGGATTATGTAAGTTGCTCTGCCATGGACCCA  750

seq1  CACATCTTGGTATAATATGACAATTGGTCTTTATCCTGCAGGTGTTCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTTGGTATAATATGACAATTGGTCTTTATCCTGCAGGTGTTCCTT  800

seq1  CACGACTAACTTTGGAGATGGTTTATTATTTTGCACATTTCTTCACCTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGACTAACTTTGGAGATGGTTTATTATTTTGCACATTTCTTCACCTAC  850

seq1  CTCACCTGAAATACATGAACCTGTATGGCACTAATCTCTCTAATGATGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTGAAATACATGAACCTGTATGGCACTAATCTCTCTAATGATGCA  900

seq1  GTTGAGAGGCTGTGCTCAGCTCTGAAATTTTCAACATGTGGAGTGGAGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGAGGCTGTGCTCAGCTCTGAAATTTTCAACATGTGGAGTGGAGGA  950

seq1  GCTGTTGTAAGTGAATTC  968
      ||||||||||||||||||
seq2  GCTGTTGTAAGTGAATTC  968

seq1: chr7_27171622_27172261
seq2: B6Ng01-020D14.g_66_705

seq1  GAATTCTGTGTATTTATCGCATTTCAAATTTACAAAGGGGCATGGTACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTATTTATCGCATTTCAAATTTACAAAGGGGCATGGTACCT  50

seq1  CCCAGGAAAAAAATCTGTAAGTATTTCATTTTTACATGTTTTTATGAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAAAAAAATCTGTAAGTATTTCATTTTTACATGTTTTTATGAGGT  100

seq1  ACGACTCAGATTGTTTCTATTTAGTCTAAAATTTTCCTAACTTGTAGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACTCAGATTGTTTCTATTTAGTCTAAAATTTTCCTAACTTGTAGCCT  150

seq1  CCCTCAGCCCTGAAGCAGGCTGATCCAGACTTTGACCTTGCTGCTACTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGCCCTGAAGCAGGCTGATCCAGACTTTGACCTTGCTGCTACTAA  200

seq1  GGAGATTACCTAGGGTGGAACCTTCCAACCTAGATGGCTCTTTTGTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATTACCTAGGGTGGAACCTTCCAACCTAGATGGCTCTTTTGTTCTG  250

seq1  TCACCTGCCACTGCTCTCTGCAAGACACTGCTATCTGCTGAGAAGCACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGCCACTGCTCTCTGCAAGACACTGCTATCTGCTGAGAAGCACCT  300

seq1  GAGATATTCCAGAGGAATATCCTATCCTGCATGTCGCGTACAGGCTGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATATTCCAGAGGAATATCCTATCCTGCATGTCGCGTACAGGCTGGCT  350

seq1  CCAGACACCAAGAATGGACTGGCAGGGGATGGATGGGCCTTCCCCCCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACACCAAGAATGGACTGGCAGGGGATGGATGGGCCTTCCCCCCCTT  400

seq1  GTAAGCACACTCTCTTAGTAAACTGGCGGGCCTTGAACAGAATCATGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCACACTCTCTTAGTAAACTGGCGGGCCTTGAACAGAATCATGTCT  450

seq1  TGGTCTCCAATAATCTCTCACCGTCTAAGTCTCTTTCAGCCCCAGCCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCCAATAATCTCTCACCGTCTAAGTCTCTTTCAGCCCCAGCCTGC  500

seq1  CTCCCAGGAGTACCCGGTTCAAGTAGGTCACAGGCTGCCATACAACAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGGAGTACCCGGTTCAAGTAGGTCACAGGCTGCCATACAACAGAT  550

seq1  TGGCGTCTGAGCCAGGGACCTTGGGAATGGCGGGAAAACACTGAGGGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGTCTGAGCCAGGGACCTTGGGAATGGCGGGAAAACACTGAGGGAAT  600

seq1  TGCTGTCTTGTATGGAGCTCCAAGGGAAGGAAAGAATCAG  640
      ||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCTTGTATGGAGCTCCAAGGGAAGGAAAGAATCAG  640