BAC Information

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BAC

Clone NameB6Ng01-020E03
Chromosome7 (Build37)
Map Location 5,385,811 - 5,386,698
singlet/doubletsinglet
Overlap genenone
Upstream geneRdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163
Downstream geneV1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020E03.bB6Ng01-020E03.g
ACCDH853109DH853110
length9891,040
definitionDH853109|Mus musculus domesticus DNA, BAC clone: B6Ng01-020E03, 5' end.DH853110|Mus musculus domesticus DNA, BAC clone: B6Ng01-020E03, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtatatattggatcttagtcccctatcagatttaggattgg
taaagatcttttcccaatctgtttgttgccattttgtcttacaaacagta
tactttgtctaacagaagctttgcaatttcatgaagtctcatttgtcaat
tgtcgatcatacatcacaagccactgctgttctgttcaggaatttttccc
ctgggcccatatacttgagttttgttccctcgttctcgtctataagtttt
agtttgtttttataagacactacatattatatatagagaaatatgtattt
gtatatatgtttatttacattatatatttatattatttctatattacaat
ttatgttatatattataagtatacatttatatatttatattactttatat
taaatatttatatattttatataagaccataagtttatataagtttatat
atatatatatatgtttatattatacatgtatattgtatattaatattatt
tacatattataattttatatattataattatatatttgtatatttatatt
atttttgtattaaatatttatatataatataagacatataaatatatcat
ataagacagtacgtttttttaagacactattgcctatgatagcaacattt
tctgacaggaccctgatacagatgtctcttgtgaggctatgccagtgcct
ggctaatccataagtggatgctcagtgtcctctattgtatggaacacagg
gcccccaatggaggagctagagaaagtacccaaggacctgagtggttctg
caaccctataggaagaacaacaatatgaactaaccagtacttccagagct
catgtgtttagctgcatatgtagtagatgatgggatactccaccatcatt
gggatgagaggcccttgatcttgtgaagattatatgccccagtagagggg
atgccaggtcctgaagcaggagtgggtgggttggggaac
gaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaacactgagat
tccacttcactccagtcagaatggctaagatcaaaaactcaggtgacagc
agatgttggcaaggatgtagagaaaggggaacacttctccatttttggtg
ggattgcaagcttgtacaaccactctggaaataagtctggcgtttcctca
gaaaattggacatagtactaccagagtatccagcaatacctctcctgggc
atatatccagaagatgtcccatccggtaagaaggacacatgctccactat
gttcatagcagccttatttatagtaggcagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaata
gagtgctactcagctattaaaaagaatgaatttatgtaattcctagccaa
ctggatggacctggagggcatcatcctgagtgaggtaacccaatcacaaa
ggaactcacacaatatatactcactgataagtggatattagcccagaaac
ttaggatacctacgatataagatacaatttgctaaatgcatgaaactcaa
gaagaacgaagtgtggacactgtgccccttcttataattgggaacaaaac
acccatggaaggagttacagagacaaaatttggacctgttatgaaaggat
tgaccatcttgtgattgccaaatccagggatccatcccataatcagcttc
caaatgctgacaccattgcatacactagcaagatttcactgaaaggacca
gttatagctctctcttgtgagactatgccggggcctagcaaacacagaag
tggatgctcacagacagctatggatgggtcacacggccctaatggaggag
ctagagaaattacccaagagctaagggaactgcaaccctattaggtggaa
aacaatatgaactaacagtaccataaatatgtatgtgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_5385811_5386698
seq2: B6Ng01-020E03.b_145_1030

seq1  TTTGTCTAACAGAAGCTTTGCAATTTCATGAAGTCTCATTTGTCAATTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTAACAGAAGCTTTGCAATTTCATGAAGTCTCATTTGTCAATTGT  50

seq1  CGATCATACATCACAAGCCACTGCTGTTCTGTTCAGGAATTTTTCCCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCATACATCACAAGCCACTGCTGTTCTGTTCAGGAATTTTTCCCCTG  100

seq1  GGCCCATATACTTGAGTTTTGTTCCCTCGTTCTCGTCTATAAGTTTTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCATATACTTGAGTTTTGTTCCCTCGTTCTCGTCTATAAGTTTTAGT  150

seq1  TTGTTTTTATAAGACACTACATATTATATATAGAGAAATATGTATTTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTATAAGACACTACATATTATATATAGAGAAATATGTATTTGTA  200

seq1  TATATGTTTATTTACATTATATATTTATATTATTTCTATATTACAATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTTTATTTACATTATATATTTATATTATTTCTATATTACAATTTA  250

seq1  TGTTATATATTATAAGTATACATTTATATATTTATATTACTTTATATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATATATTATAAGTATACATTTATATATTTATATTACTTTATATTAA  300

seq1  ATATTTATATATTTTATATAAGACCATAAGTTTATATAAGTTTATATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATATATTTTATATAAGACCATAAGTTTATATAAGTTTATATATA  350

seq1  TATATATATGTTTATATTATACATGTATATTGTATATTAATATTATTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATGTTTATATTATACATGTATATTGTATATTAATATTATTTAC  400

seq1  ATATTATAATTTTATATATTATAATTATATATTTGTATATTTATATTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATAATTTTATATATTATAATTATATATTTGTATATTTATATTATT  450

seq1  TTTGTATTAAATATTTATATATAATATAAGACATATAAATATATCATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATTAAATATTTATATATAATATAAGACATATAAATATATCATATA  500

seq1  AGACAGTACGTTTTTTTAAGACACTATTGCCTATGATAGCAACATTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTACGTTTTTTTAAGACACTATTGCCTATGATAGCAACATTTTCT  550

seq1  GACAGGACCCTGATACAGATGTCTCTTGTGAGGCTATGCCAGTGCCTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGACCCTGATACAGATGTCTCTTGTGAGGCTATGCCAGTGCCTGGC  600

seq1  TAATCCATAAGTGGATGCTCAGTGTCCTCTATTGTATGGAACACAGGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCATAAGTGGATGCTCAGTGTCCTCTATTGTATGGAACACAGGGCC  650

seq1  CCCAATGGAGGAGCTAGAGAAAGTACCCAAGGACCTGAGTGGTTCTGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATGGAGGAGCTAGAGAAAGTACCCAAGGACCTGAGTGGTTCTGCAA  700

seq1  CCCTATAGGAAGAACAACAATATGAACTAACCAGTACTTCCAGAGCTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATAGGAAGAACAACAATATGAACTAACCAGTACTTCCAGAGCTCAT  750

seq1  GTGTTTAGCTGCATATGTAGTAGATGATGGGATACTCCACCATCATTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTAGCTGCATATGTAGTAGATGATGGGATACTCCACCATCATTGGG  800

seq1  ATGAGAGGCCCTTGATCTTGTGAAGATTATATGCCCCAGTAGAGGGGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATGAGAGGCCCTTGATCTTGTGAAGATTATATGCCCCAGTAGAGGGG-AT  849

seq1  GCCAGGGTCTGGAAGCAGGAGTGGGTGGGTTGGGGAGC  888
      |||| ||||  ||||||||||||||||||||||||| |
seq2  GCCA-GGTCCTGAAGCAGGAGTGGGTGGGTTGGGGAAC  886