BAC Information

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BAC

Clone NameB6Ng01-020N23
Chromosome7 (Build37)3 (Build37)
Map Location 70,106,562 - 70,106,816124,937,151 - 124,938,255
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneNdn, Magel2, Mkrn3, Peg12, Atp5l-ps1, EG665038, LOC669222, LOC384631, LOC622243, EG622251
Downstream geneChrna7, Otud7a, LOC545971, LOC100041386, LOC665083, Klf13, E030018B13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020N23.bB6Ng01-020N23.g
ACCDH853545DH853546
length9851,104
definitionDH853545|Mus musculus domesticus DNA, BAC clone: B6Ng01-020N23, 5' end.DH853546|Mus musculus domesticus DNA, BAC clone: B6Ng01-020N23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(70,106,562 - 70,106,816)(124,937,151 - 124,938,255)
sequence
gaattctgagcttctggtctaatatccacttatcagtgagtgcataccat
gtgtgttcttttgtgattgggttacctcactcaggatgatattttctagt
tctgtccatttgcctaagaatttcatgaattaattatttttaatagatga
gtagtactccattgtgtaaatgtaccacattttctgtatccattcctctg
ttgagggacacctgggttgtttccagcttctggctattataaataaggct
gctgtgaatataatggagcatgtgtcgttactacatgttaaagcatctta
tggatatatgctcaggaattgtatagccacaaactaaggctggtcttcag
taacaacaaaaacaatggaaagcctacataaatgcagaagctgaataaca
ttctaatcaatggtaacttgttcaaggaaaaaaataaagaaattaaagac
cttttagaatttaaatgaagctacaatatgcccaaacttattggacacaa
tgaaagcagtgctataagaggaaaactcatagctctgagtgcctccaaaa
agaaagtgaaaagagtttacactagcagcttaacagcacacctgaaagct
ccagaacaaaaagaagcaaatacacccaagaggagtagatggcaggaaat
aatcaaactcagagctgaaatcaatcaagtagaaacaaaaagaactatac
aaagaatcaaccaaaccaggagctggttctttgagagtgtccttgttgag
aaatctattaacacaatacctccacctgaggctcagggaatttctcagaa
aaaaaggtagaaagattaaaagagccagagattagaaaatctccagcaac
attgtctctcctaggaataacaaggaaactgtacccatgacaacttaata
atatgccttggcagatatacatgaatgatataccatccgtatacacattc
actgagaaatgagaacctcatggggtaccacctat
gaattcaaaattattttctgattcccatttgtctcaggtatacacatagt
acacatagttgcatgtgggcaaatcaatcatacacatgaaatttttaaaa
aattctgaaagtaaaataaatttctttgttctgattctttgaccattcac
acttttatgttcatatttgtgtttgtatgtttatttatgctgctatagca
cattgatattgagtggggttctaaacacattcataaaaaatatcaaagtt
tgaaatcttagataaccaataaaatatctttttcttttcttcctaagact
acatggtaaaaaaacccacaaacagcttcaaagatgatgctttcttaaat
tatgtttaaagctataaagaggctgtgattagaggtcaactgaaagcagg
catacctttattgtaaggtcattacaggatcttgagtgatacctaattta
aagtccatgaaaataaattgaaagatcactttttatgaattcataatggc
cttacacttttaacaggaggtaaagtgcgctaatgaaatcataaaaatga
aggcagtatgcctttgaccaaaccagtctttatgcttgcctgagaacctt
agcttaggaaacaatcactttattcatctataggataaaatacttgcaaa
tttcaacgtaagaaatgggtggaacttaggggcataattaggataattag
tgtgtaactattttacattattgtattgttgtacattataagcacataat
gaatttcagctacatgtaatagaattgtttgtaatagagtcatgacaaac
acttaaagtacaacattggttattaaaattaacataggttaattttagca
gtaattttattaaaagttttaataaatgatcttttatataaagtcattgg
accccatgcttcaattaatatataacatcaaatatactgtttaatatgca
atcatcattaaataaacattttgtattttagagcaaactaaaaaatgcgt
gttctatgaaatggaattttaagtaaggaatttgaattaaacaatagcat
tttggtttctctggaatctgaggtggtaggttaacactaaatctctcaac
gagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_70106562_70106816
seq2: B6Ng01-020N23.b_66_320 (reverse)

seq1  GACACATGGTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG  50
      |||||||| |||| ||| |||| |||||||||||||||||||||||||||
seq2  GACACATGCTCCATTATATTCACAGCAGCCTTATTTATAATAGCCAGAAG  50

seq1  CTGGAAAGAACCCAGATGTCCCTCAACAGAGGAATGGATACAGAAAATGT  100
      ||||||| ||||||| ||||||||||||||||||||||||||||||||||
seq2  CTGGAAACAACCCAGGTGTCCCTCAACAGAGGAATGGATACAGAAAATGT  100

seq1  GGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAACAACAAATTT  150
      ||||||||||||||||||||||||||||| |||||||||| ||  |||| 
seq2  GGTACATTTACACAATGGAGTACTACTCATCTATTAAAAATAATTAATTC  150

seq1  ATGAAATTCTTAGGCAAATGGATAGAACAAGAAAATATCAATCTGAATGA  200
      |||||||||||||||||||||| ||||| |||||||||||  |||| |||
seq2  ATGAAATTCTTAGGCAAATGGACAGAACTAGAAAATATCATCCTGAGTGA  200

seq1  AGTAATACAACCACAAAAGAACACACATGGTATGCACTCACTGATAAGTG  250
       ||||  ||| |||||||||||||||||||||||||||||||||||||||
seq2  GGTAACCCAATCACAAAAGAACACACATGGTATGCACTCACTGATAAGTG  250

seq1  GATAT  255
      |||||
seq2  GATAT  255

seq1: chr3_124937151_124938255
seq2: B6Ng01-020N23.g_64_1167

seq1  GAATTCAAAATTATTTTCTGATTCCCATTTGTCTCAGGTATACACATAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATTATTTTCTGATTCCCATTTGTCTCAGGTATACACATAGT  50

seq1  ACACATAGTTGCATGTGGGCAAATCAATCATACACATGAAATTTTTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAGTTGCATGTGGGCAAATCAATCATACACATGAAATTTTTAAAA  100

seq1  AATTCTGAAAGTAAAATAAATTTCTTTGTTCTGATTCTTTGACCATTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGAAAGTAAAATAAATTTCTTTGTTCTGATTCTTTGACCATTCAC  150

seq1  ACTTTTATGTTCATATTTGTGTTTGTATGTTTATTTATGCTGCTATAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTATGTTCATATTTGTGTTTGTATGTTTATTTATGCTGCTATAGCA  200

seq1  CATTGATATTGAGTGGGGTTCTAAACACATTCATAAAAAATATCAAAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATATTGAGTGGGGTTCTAAACACATTCATAAAAAATATCAAAGTT  250

seq1  TGAAATCTTAGATAACCAATAAAATATCTTTTTCTTTTCTTCCTAAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCTTAGATAACCAATAAAATATCTTTTTCTTTTCTTCCTAAGACT  300

seq1  ACATGGTAAAAAAACCCACAAACAGCTTCAAAGATGATGCTTTCTTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTAAAAAAACCCACAAACAGCTTCAAAGATGATGCTTTCTTAAAT  350

seq1  TATGTTTAAAGCTATAAAGAGGCTGTGATTAGAGGTCAACTGAAAGCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTAAAGCTATAAAGAGGCTGTGATTAGAGGTCAACTGAAAGCAGG  400

seq1  CATACCTTTATTGTAAGGTCATTACAGGATCTTGAGTGATACCTAATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTTTATTGTAAGGTCATTACAGGATCTTGAGTGATACCTAATTTA  450

seq1  AAGTCCATGAAAATAAATTGAAAGATCACTTTTTATGAATTCATAATGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCATGAAAATAAATTGAAAGATCACTTTTTATGAATTCATAATGGC  500

seq1  CTTACACTTTTAACAGGAGGTAAAGTGCGCTAATGAAATCATAAAAATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACACTTTTAACAGGAGGTAAAGTGCGCTAATGAAATCATAAAAATGA  550

seq1  AGGCAGTATGCCTTTGACCAAACCAGTCTTTATGCTTGCCTGAGAACCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTATGCCTTTGACCAAACCAGTCTTTATGCTTGCCTGAGAACCTT  600

seq1  AGCTTAGGAAACAATCACTTTATTCATCTATAGGATAAAATACTTGCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGGAAACAATCACTTTATTCATCTATAGGATAAAATACTTGCAAA  650

seq1  TTTCAACGTAAGAAATGGGTGGAACTTAGGGGCATAATTAGGATAATTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACGTAAGAAATGGGTGGAACTTAGGGGCATAATTAGGATAATTAG  700

seq1  TGTGTAACTATTTTACATTATTGTATTGTTGTACATTATAAGCACATAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAACTATTTTACATTATTGTATTGTTGTACATTATAAGCACATAAT  750

seq1  GAATTTCAGCTACATGTAATAGAATTGTTTGTAATAGAGTCATGACAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCAGCTACATGTAATAGAATTGTTTGTAATAGAGTCATGACAAAC  800

seq1  ACTTAAAGTACAACATTGGTTATTAAAATTAACATAGGTTAATTTTAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAGTACAACATTGGTTATTAAAATTAACATAGGTTAATTTTAGCA  850

seq1  GTAATTTTATTAAAAGTTTTAATAAATGATCTTTTATATAAAGTCATTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTTATTAAAAGTTTTAATAAATGATCTTTTATATAAAGTCATTGG  900

seq1  ACCCCATGCTTCAATTAATAATATAACATCAAATATACTGTTTAATATGC  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACCCCATGCTTCAATTAAT-ATATAACATCAAATATACTGTTTAATATGC  949

seq1  AATCATCATTAAATAAACA-TTTGTATTTTAGAGCAAAACTATAAAATGC  999
      ||||||||||||||||||| ||||||||||||||| |||||| |||||||
seq2  AATCATCATTAAATAAACATTTTGTATTTTAGAGC-AAACTAAAAAATGC  998

seq1  GTGTTCTATTGAAATGGAATTTTAAGTAAGGAATTTGAATTAAAC-ATAG  1048
      |||||||| |||||||||||||||||||||||||||||||||||| ||||
seq2  GTGTTCTA-TGAAATGGAATTTTAAGTAAGGAATTTGAATTAAACAATAG  1047

seq1  CATTTTGGTTTCTCTGGTATCTGAAGTTGGTAGGTTATCA-TAAATC-CT  1096
      ||||||||||||||||| ||||| || |||||||||| || |||||| ||
seq2  CATTTTGGTTTCTCTGGAATCTG-AGGTGGTAGGTTAACACTAAATCTCT  1096

seq1  CAAACGAGG  1105
      | |||||||
seq2  C-AACGAGG  1104