BAC Information

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BAC

Clone NameB6Ng01-020O01
Chromosome7 (Build37)
Map Location 49,628,716 - 49,732,241
singlet/doubletdoublet
Overlap geneVmn2r-ps60, 4933421I07Rik, LOC628503, BC063263
Upstream geneAI987944, EG269902, LOC100039375, EG628359, 2610021A01Rik, 2810426N06Rik, LOC668576, Gprc2a-rs5, LOC628372, EG668579, EG628403, EG628422, Gprc2a-rs1, EG628444, EG434174, EG637913, EG434175, LOC100039556, EG637898, Gprc2a-rs2, LOC434177
Downstream geneLOC100039449, EG637776, C330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020O01.bB6Ng01-020O01.g
ACCDH853549DH853550
length917915
definitionDH853549|Mus musculus domesticus DNA, BAC clone: B6Ng01-020O01, 5' end.DH853550|Mus musculus domesticus DNA, BAC clone: B6Ng01-020O01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,731,320 - 49,732,241)(49,628,716 - 49,629,446)
sequence
gaattcactgagaagtaacatggggtgggggggtacataggagtctttga
gatatgttttatggagtatgggattaagcagtatttcagtattctgtgac
gaaaaggggattaataacacaggacaacacataatgatatcattgtgaga
agtatttgactgaaaattctttacaacttcctcaacaggtaaatctacct
aatgacatggactgcaatgtagatcaacataagactgtgtatgagaatcc
agtaggacgtgaaagccatcattggttgggtatttctgaatactgccaca
gatatcaggaagataataaaggccttactacagactttgcactgcataat
aaccacaacagtcagtttacagagatttcttaccaaggtaacgactcctg
gaatatctataaacaagatgtaactcctagtgaaggacagataagtaatt
gttctctggagaattgttacaataatgatagatgtaggggtgtctctggt
cagtgcacacaatcacctttgtaccagcaggattatagccaagagaagct
gtccacaagcagccagcagtataaaattgcaaatgagtgctcaaattgta
gtcagtgtactgaaattaaggctagaagagaattttaacagacagagata
tgataagtacagcaaagtctctgttgaatcaccaagcattgatagggata
aggtaaatgatattcaaagaaaaccatgcctgtttatgggaagtgataaa
tccttcaatttctatttaaatatgactcaaatgattcaagccatactaga
gaaaaacctcagaatataaagaatatatactggagattacctctccttcg
aaacttgttgggcatccgagatccttgttcaccaaaatataggaaactgg
gaaatgctccaaagttc
gaattcaaactagattctttgatggacaataatcataatatttaaataca
taggattgagaaattttcctggtagcaggactgggcatctataaaatctt
tttcatgttggcatgttctgacaaaaagcattgttacattgctgaaatga
gtgacaatttaaatgtaatctcatcactacaaacatagacatcataatcc
aagaagatttttaaaataaactctgttgtctcacacctaaaaactctaga
acaaaaggaagcaaattcacccaagaagagtagatggcaggaaataaact
caggggtaaaatcaaccaactggaaacaagaactattcaaatatacagcc
aaacgaggaggtggttctttgagaaaatcaacaagataaaccattagcca
gactcactagagggcacaggacagcatcctaattaacaaattcagaaatg
aaaagggagacataacaaaagatcctgaggaaatccaaaacaccatcata
tcattctacaaaaggctatactcaacaaaactggaaaacctggatgaagt
ggacaaatatctagaacaattccaggtaccaaagttaaatcagtatcaga
ttaatgacctaaacagtcctatgtcccctaaagaaataaaagcaatcatt
aatagtctcccaaccaaaaaaaaaaaaaaaaaaaaagcgcaggaccagat
aggtttagtgcaaagttctatcagaccttcaaggaagacttaattccagt
tcttctcaaactattccacaaaatagaaacagaaagtactgtacccaatt
cattctatgaagccacaattattctgatacctaaccacataaagacccaa
caagatagagagcttcagaccaacttcccttatgaatactgatgaaaaaa
tactcaataaaattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_49731320_49732241
seq2: B6Ng01-020O01.b_43_959 (reverse)

seq1  GAACTTCTGGAGCATTTCCCAGATTTCCTATATTTTTGTTGAACAAAGGA  50
      |||||| ||||||||||||||| ||||||||| ||||| ||||| |||||
seq2  GAACTT-TGGAGCATTTCCCAG-TTTCCTATA-TTTTGGTGAAC-AAGGA  46

seq1  TCTCGGATGCCCAACAAGTTTCGAAGGAGAGGTAATCTCCAGTCTATATT  100
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCTCGGATGCCCAACAAGTTTCGAAGGAGAGGTAATCTCCAGTATATATT  96

seq1  CTTTATATTTCTGAGGTTTTTCTCTAGTATGGCTTGAATCATTTTGAGTC  150
      ||||||| ||||||||||||||||||||||||||||||||| ||||||||
seq2  CTTTATA-TTCTGAGGTTTTTCTCTAGTATGGCTTGAATCA-TTTGAGTC  144

seq1  ATATTTAAATAGAAATTGAAGGATTTATCACTTCCCATAAACAGGCATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAAATAGAAATTGAAGGATTTATCACTTCCCATAAACAGGCATGG  194

seq1  TTTTCTTTGAATATCATTTACCTTATCCCTATCAATGCTTGGTGATTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTGAATATCATTTACCTTATCCCTATCAATGCTTGGTGATTCAA  244

seq1  CAGAGACTTTGCTGTACTTATCATATCTCTGTCTGTT-AAATTCTCTTCT  299
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAGAGACTTTGCTGTACTTATCATATCTCTGTCTGTTAAAATTCTCTTCT  294

seq1  AGCCTTAATTTCAGTACACTGACTACAATTTGAGCACTCATTTGCAATTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTAATTTCAGTACACTGACTACAATTTGAGCACTCATTTGCAATTT  344

seq1  TATACTGCTGGCTGCTTGTGGACAGCTTCTCTTGGCTATAATCCTGCTGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGCTGGCTGCTTGTGGACAGCTTCTCTTGGCTATAATCCTGCTGG  394

seq1  TACAAAGGTGATTGTGTGCACTGACCAGAGACACCCCTACATCTATCATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGGTGATTGTGTGCACTGACCAGAGACACCCCTACATCTATCATT  444

seq1  ATTGTAACAATTCTCCAGAGAACAATTACTTATCTGTCCTTCACTAGGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAACAATTCTCCAGAGAACAATTACTTATCTGTCCTTCACTAGGAG  494

seq1  TTACATCTTGTTTATAGATATTCCAGGAGTCGTTACCTTGGTAAGAAATC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCTTGTTTATAGATATTCCAGGAGTCGTTACCTTGGTAAGAAATC  544

seq1  TCTGTAAACTGACTGTTGTGGTTATTATGCAGTGCAAAGTCTGTAGTAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAACTGACTGTTGTGGTTATTATGCAGTGCAAAGTCTGTAGTAAG  594

seq1  GCCTTTATTATCTTCCTGATATCTGTGGCAGTATTCAGAAATACCCAACC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTATTATCTTCCTGATATCTGTGGCAGTATTCAGAAATACCCAACC  644

seq1  AATGATGGCTTTCACGTCCTACTGGATTCTCATACACAGTCTTATGTTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGGCTTTCACGTCCTACTGGATTCTCATACACAGTCTTATGTTGA  694

seq1  TCTACATTGCAGTCCATGTCATTAGGTAGATTTACCTGTTGAGGAAGTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATTGCAGTCCATGTCATTAGGTAGATTTACCTGTTGAGGAAGTTG  744

seq1  TAAAGAATTTTCAGTCAAATACTTCTCACAATGATATCATTATGTGTTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAATTTTCAGTCAAATACTTCTCACAATGATATCATTATGTGTTGT  794

seq1  CCTGTGTTATTAATCCCCTTTTCGTCACAGAATACTGAAATACTGCTTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTTATTAATCCCCTTTTCGTCACAGAATACTGAAATACTGCTTAA  844

seq1  TCCCATACTCCATAAAACATATCTCAAAGACTCCTATGTACCCCCCCACC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATACTCCATAAAACATATCTCAAAGACTCCTATGTACCCCCCCACC  894

seq1  CCATGTTACTTCTCAGTGAATTC  922
      |||||||||||||||||||||||
seq2  CCATGTTACTTCTCAGTGAATTC  917

seq1: chr7_49628716_49629446
seq2: B6Ng01-020O01.g_64_792

seq1  GAATTCAAACTAGATTCTTTGATGGACAATAATCATAATATTTAAATACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTAGATTCTTTGATGGACAATAATCATAATATTTAAATACA  50

seq1  TAGGATTGAGAAATTTTCCTGGTAGCAGGACTGGGCATCTATAAAATCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATTGAGAAATTTTCCTGGTAGCAGGACTGGGCATCTATAAAATCTT  100

seq1  TTTCATGTTGGCATGTTCTGACAAAAAGCATTGTTACATTGCTGAAATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGTTGGCATGTTCTGACAAAAAGCATTGTTACATTGCTGAAATGA  150

seq1  GTGACAATTTAAATGTAATCTCATCACTACAAACATAGACATCATAATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAATTTAAATGTAATCTCATCACTACAAACATAGACATCATAATCC  200

seq1  AAGAAGATTTTTAAAATAAACTCTGTTGTCTCACACCTAAAAACTCTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGATTTTTAAAATAAACTCTGTTGTCTCACACCTAAAAACTCTAGA  250

seq1  ACAAAAGGAAGCAAATTCACCCAAGAAGAGTAGATGGCAGGAAATAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGGAAGCAAATTCACCCAAGAAGAGTAGATGGCAGGAAATAAACT  300

seq1  CAGGGGTAAAATCAACCAACTGGAAACAAGAACTATTCAAATATACAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTAAAATCAACCAACTGGAAACAAGAACTATTCAAATATACAGCC  350

seq1  AAACGAGGAGGTGGTTCTTTGAGAAAATCAACAAGATAAACCATTAGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGAGGAGGTGGTTCTTTGAGAAAATCAACAAGATAAACCATTAGCCA  400

seq1  GACTCACTAGAGGGCACAGGACAGCATCCTAATTAACAAATTCAGAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCACTAGAGGGCACAGGACAGCATCCTAATTAACAAATTCAGAAATG  450

seq1  AAAAGGGAGACATAACAAAAGATCCTGAGGAAATCCAAAACACCATCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGAGACATAACAAAAGATCCTGAGGAAATCCAAAACACCATCATA  500

seq1  TCATTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAGT  550

seq1  GGACAAATATCTAGAACAATTCCAGGTACCAAAGTTAAATCAGTATCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAATATCTAGAACAATTCCAGGTACCAAAGTTAAATCAGTATCAGA  600

seq1  TTAATGACCTAAACAGTCCTATGTCCCCTAAAGAAATAAAAGCAATCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGACCTAAACAGTCCTATGTCCCCTAAAGAAATAAAAGCAATCATT  650

seq1  AATAGTCTCCCAACCAAAAAAAAAAAAAAAAAAAAAAAGCGCAGGACCAG  700
      |||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  AATAGTCTCCCAACC--AAAAAAAAAAAAAAAAAAAAAGCGCAGGACCAG  698

seq1  ATAGGTTTAGTGCAAAGTTCTATCAGACCTT  731
      |||||||||||||||||||||||||||||||
seq2  ATAGGTTTAGTGCAAAGTTCTATCAGACCTT  729