BAC Information

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BAC

Clone NameB6Ng01-021D06
Chromosome7 (Build37)
Map Location 7,657,679 - 7,788,948
singlet/doubletdoublet
Overlap geneLOC665485, EG625353
Upstream genePeg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636
Downstream geneVmn2r-ps40, Vmn2r36, LOC638170, LOC100042662, LOC100041942, LOC100042673, LOC100041949, LOC100042681, LOC100042688, LOC100042695, LOC100041956, LOC100041961, LOC100042703, LOC100041967, LOC100042724, LOC100041977, LOC100041983, LOC100041989, LOC100041998
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021D06.bB6Ng01-021D06.g
ACCDH853773DH853774
length1,111999
definitionDH853773|Mus musculus domesticus DNA, BAC clone: B6Ng01-021D06, 5' end.DH853774|Mus musculus domesticus DNA, BAC clone: B6Ng01-021D06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,657,679 - 7,658,825)(7,787,938 - 7,788,948)
sequence
gaattcaattcccagcagcaacatgatggctcacaaccatctatacagct
acagtgtactcatatacataaaataaataaaaacaaatctttaaaaaggg
tttttcatattcaatgcataatatatcaaaattatccacaaacccttaga
tatcaaatcatgtgaattttttaaatagggatgtctagatcatgaataaa
gtattaatctctaccttagtaggcttgtctaatgttacaagaaatcattt
gtcctcttcattagtttaataaaggtcttgaaccttgatttccagcatcc
aactagtacagtccaattgatcttttgccattttctcttctctcctggct
ccaccacttacatggtgaccaggaaatataataaatagggacaaatactt
aaatgtaaaaacatgaataaatattattaaaattcaagataggaatataa
tagaaatgtaattttagaggagattgggtgttataataaatttgtgtaga
attcccataaactgcagttgagtattacatctttcgctgcaaaaataaca
ttttctatgaatttaaaatgagtaaaatgtggatgttaatgcttaatttg
ttccttaaagggacattactatgatcatacttctatgaagaggaacttcc
ggaagtgatagtttttattaatgctgatgcattttagacccattcagcat
ccaattttgaaaggagaattgacaaatgtgaaggatttattctagttgca
aacactcaattgtctttttggaaattccattttctaggaagcagcatagt
caaagcatcgggttcccatgccaccctttgagatttctttctccagaaac
tcaatcacaacttctgagggcagtctctgagaaaataattttcatgcaat
atcactagtttacatattccttccataactatacgttgactatctacaca
atatttaatctttcttttgtatctttatcattttttaggtcagtcatatc
tcttcccattcatcctgactctttgcattctactctttccccatctccag
aggaatccccacttccaaaccaagacttcaaattttgatccagattgggg
gttaggtgtgc
gaattccaagaacaggaagcagagtcaaagacagtttctactccagctgg
tagggttcccacatgaagattctgctgcatatctgaatgtttcagtttaa
ataattggtgggttttatttggtatttattatgggttgacaaaaaatagc
tttgtacataaagcacctatgaaacagatagatatacttcccaagcgtgt
aatcaagtggttctttaaacctttctaaaattttaagcttcatatagtgg
tgatcccaacaaaaatattcagtttttacttcacaactatgattttgctg
ctgttatgaatcattttgtaaataactgatatgcaaccccaaaggggtta
cagcccacagattgagaggcactttattccaacactttggaggcaggggc
agacagatacactaagatacaaacaagcctggactacatattgtattcca
ggccaccctgggctttagagtacacatttctcaaataacaagatacagaa
actttttttattccctcagcattagcaacagagaattgaataacaagtag
ttctgctgaatgcacatttgaagataatacacagtacatgatatcacttc
ttttataagctatatatgatttcatattctaattcctttcagattactgt
gataaaatccaatgaattatttgatttatcaaagaaagcctttaatttga
tttacagtgtcagtgggttagagtgcatgcagaacagatggaacagctga
gagctctccttttggaccacaaatacatttgaaaaaaactggcaatttta
ggtataagtatgtaataactcaaatcttagtgcagtggcagatcatttcc
aacaacatcagttctcttctaccttaccaaacatatctccatctgtgacc
agatacaacctaccaggtagggagtcactttcatccaaccaccatataca
taatctaatttcctaaatcatgagaactagaaatttccaagaactaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_7657679_7658825
seq2: B6Ng01-021D06.b_46_1156

seq1  GAATTCAATTCCCAGCAGCAACATGATGGCTCACAACCATCTATACAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCCCAGCAGCAACATGATGGCTCACAACCATCTATACAGCT  50

seq1  ACAGTGTACTCATATACATAAAATAAATAAAAACAAATCTTTAAAAAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTACTCATATACATAAAATAAATAAAAACAAATCTTTAAAAAGGG  100

seq1  TTTTTCATATTCAATGCATAATATATCAAAATTATCCACAAACCCTTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATATTCAATGCATAATATATCAAAATTATCCACAAACCCTTAGA  150

seq1  TATCAAATCATGTGAATTTTTTAAATAGGGATGTCTAGATCATGAATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAATCATGTGAATTTTTTAAATAGGGATGTCTAGATCATGAATAAA  200

seq1  GTATTAATCTCTACCTTAGTAGGCTTGTCTAATGTTACAAGAAATCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAATCTCTACCTTAGTAGGCTTGTCTAATGTTACAAGAAATCATTT  250

seq1  GTCCTCTTCATTAGTTTAATAAAGGTCTTGAACCTTGATTTCCAGCATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTTCATTAGTTTAATAAAGGTCTTGAACCTTGATTTCCAGCATCC  300

seq1  AACTAGTACAGTCCAATTGATCTTTTGCCATTTTCTCTTCTCTCCTGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGTACAGTCCAATTGATCTTTTGCCATTTTCTCTTCTCTCCTGGCT  350

seq1  CCACCACTTACATGGTGACCAGGAAATATAATAAATAGGGACAAATACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACTTACATGGTGACCAGGAAATATAATAAATAGGGACAAATACTT  400

seq1  AAATGTAAAAACATGAATAAATATTATTAAAATTCAAGATAGGAATATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAAAAACATGAATAAATATTATTAAAATTCAAGATAGGAATATAA  450

seq1  TAGAAATGTAATTTTAGAGGAGATTGGGTGTTATAATAAATTTGTGTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATGTAATTTTAGAGGAGATTGGGTGTTATAATAAATTTGTGTAGA  500

seq1  ATTCCCATAAACTGCAGTTGAGTATTACATCTTTCGCTGCAAAAATAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCATAAACTGCAGTTGAGTATTACATCTTTCGCTGCAAAAATAACA  550

seq1  TTTTCTATGAATTTAAAATGAGTAAAATGTGGATGTTAATGCTTAATTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTATGAATTTAAAATGAGTAAAATGTGGATGTTAATGCTTAATTTG  600

seq1  TTCCTTAAAGGGACATTACTATGATCATACTTCTATGAAGAGGAACTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAAAGGGACATTACTATGATCATACTTCTATGAAGAGGAACTTCC  650

seq1  GGAAGTGATAGTTTTTATTAATGCTGATGCATTTTAGACCCATTCAGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGATAGTTTTTATTAATGCTGATGCATTTTAGACCCATTCAGCAT  700

seq1  CCAATTTTGAAAGGAGAATTGACAAATGTGAAGGATTTATTCTAGTTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTTGAAAGGAGAATTGACAAATGTGAAGGATTTATTCTAGTTGCA  750

seq1  AACACTCAATTGTCTTTTTGGAAATTCCATTTTCTAGGAAGCAGCATAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTCAATTGTCTTTTTGGAAATTCCATTTTCTAGGAAGCAGCATAGT  800

seq1  CAAAGCATCGGGTTCCCATGCCACCCTTTGAGATTTCTTTCTCCAGAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCATCGGGTTCCCATGCCACCCTTTGAGATTTCTTTCTCCAGAAAC  850

seq1  TCAATCACAACTTTCTGAGGGCAGTCTCTGAGAAAAATAATTTTCATGCA  900
      ||||||||||| |||||||||||||||||||| |||||||||||||||| 
seq2  TCAATCACAAC-TTCTGAGGGCAGTCTCTGAG-AAAATAATTTTCATGC-  897

seq1  AATATCACTAGTTTTACATATTCCTTCCATAACTATACGTTTGACATATC  950
      ||||||||||| ||||||||||||||||||||||||||| ||||| ||||
seq2  AATATCACTAG-TTTACATATTCCTTCCATAACTATACG-TTGAC-TATC  944

seq1  TACACAAATATTTTAATTCTTTCTTTTGTATCTTTAATCATTTTTTATAG  1000
      ||||| |||||||  | |||||||||||||||||| |||||||||  |||
seq2  TACAC-AATATTT--AATCTTTCTTTTGTATCTTT-ATCATTTTT--TAG  988

seq1  TCCAGTCATTATCTTCTTCCCAATTCATCCCCTGACTCTTCTGCATTTCC  1050
        |||||| |||| ||||||| ||||||  |||||||||| ||||||  |
seq2  GTCAGTCA-TATC-TCTTCCC-ATTCAT--CCTGACTCTT-TGCATT--C  1030

seq1  TACCTCTTCCCCCATCTCCAAGAGGATATCCCCACCTTCCAAAACACAAG  1100
      || ||||| |||||||||| |||||| ||||||| ||||||||   ||||
seq2  TA-CTCTTTCCCCATCTCC-AGAGGA-ATCCCCA-CTTCCAAA--CCAAG  1074

seq1  ACCTTCCAAATTTTTGGAGTCTCAGGATTCTGGGGTGTTAGGTGTGC  1147
      ||  | ||||||||  ||   ||  ||||   ||| |||||||||||
seq2  AC--TTCAAATTTT--GA---TCCAGATT---GGGGGTTAGGTGTGC  1111

seq1: chr7_7787938_7788948
seq2: B6Ng01-021D06.g_67_1065 (reverse)

seq1  ACCTAGTATCTTGGAAATTTCTAGTTTCCTCATGATTTAGGAAAATTAGA  50
      ||||||| ||||||||||||||||||  ||||||||||||| ||||||||
seq2  ACCTAGT-TCTTGGAAATTTCTAGTT--CTCATGATTTAGG-AAATTAGA  46

seq1  TTAATGTATATGGTGGTTTGAATGAAAGTGACTCCCTAACCTGGTATGTT  100
      || ||||||||||||| ||| |||||||||||||||| |||||||| | |
seq2  TT-ATGTATATGGTGG-TTGGATGAAAGTGACTCCCT-ACCTGGTA-GGT  92

seq1  TGTATTCTTGGTCCACAGATTGGAGATATGTTTGGTAAGGTAGAAGAGAA  150
      |||||   |||| |||||| ||||||||||||||||||||||||||||||
seq2  TGTAT--CTGGT-CACAGA-TGGAGATATGTTTGGTAAGGTAGAAGAGAA  138

seq1  CTGATGTTGTTGGAAATGATCTGCCACTGCACTAAGATTTGAGTTATTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTTGTTGGAAATGATCTGCCACTGCACTAAGATTTGAGTTATTAC  188

seq1  ATACTTATACCTAAAATTGCCAGTTTTTTTCAATTGTATTTGTGGTCCAA  250
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATACTTATACCTAAAATTGCCAGTTTTTTTCAAATGTATTTGTGGTCCAA  238

seq1  AAGGAGAGCTCTCAGCTGTTCCATCTGTTCTGCATGCACTCTAACCCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAGCTCTCAGCTGTTCCATCTGTTCTGCATGCACTCTAACCCACT  288

seq1  GACACTGTAAATCAAATTAAAGGCTTTCTTTGATAAATCAAATAATTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGTAAATCAAATTAAAGGCTTTCTTTGATAAATCAAATAATTCAT  338

seq1  TGGATTTTATCACAGTAATCTGAAAGGAATTAGAATATGAAATCATATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTTATCACAGTAATCTGAAAGGAATTAGAATATGAAATCATATAT  388

seq1  AGCTTATAAAAGAAGTGATATCATGTACTGTGTATTATCTTCAAATGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTATAAAAGAAGTGATATCATGTACTGTGTATTATCTTCAAATGTGC  438

seq1  ATTCAGCAGAACTACTTGTTATTCAATTCTCTGTTGCTAATGCTGAGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGCAGAACTACTTGTTATTCAATTCTCTGTTGCTAATGCTGAGGGA  488

seq1  ATAAAAAAAGTTTCTGTATCTTGTTATTTGAGAAATGTGTACTCTAAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAAGTTTCTGTATCTTGTTATTTGAGAAATGTGTACTCTAAAGC  538

seq1  CCAGGGTGGCCTGGAATACAATATGTAGTCCAGGCTTGTTTGTATCTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTGGCCTGGAATACAATATGTAGTCCAGGCTTGTTTGTATCTTAG  588

seq1  TGTATCTGTCTGCCCCTGCCTCCAAAGTGTTGGAATAAAGTGCCTCTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTGTCTGCCCCTGCCTCCAAAGTGTTGGAATAAAGTGCCTCTCAA  638

seq1  TCTGTGGGCTGTAACCCCTTTGGGGTTGCATATCAGTTATTTACAAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGGCTGTAACCCCTTTGGGGTTGCATATCAGTTATTTACAAAATG  688

seq1  ATTCATAACAGCAGCAAAATCATAGTTGTGAAGTAAAAACTGAATATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATAACAGCAGCAAAATCATAGTTGTGAAGTAAAAACTGAATATTTT  738

seq1  TGTTGGGATCACCACTATATGAAGCTTAAAATTTTAGAAAGGTTTAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGATCACCACTATATGAAGCTTAAAATTTTAGAAAGGTTTAAAGA  788

seq1  ACCACTTGATTACACGCTTGGGAAGTATATCTATCTGTTTCATAGGTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTGATTACACGCTTGGGAAGTATATCTATCTGTTTCATAGGTGCT  838

seq1  TTATGTACAAAGCTATTTTTTGTCAACCCATAATAAATACCAAATAAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTACAAAGCTATTTTTTGTCAACCCATAATAAATACCAAATAAAAC  888

seq1  CCACCAATTATTTAAACTGAAACATTCAGATATGCAGCAGAATCTTCATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAATTATTTAAACTGAAACATTCAGATATGCAGCAGAATCTTCATG  938

seq1  TGGGAACCCTACCAGCTGGAGTAGAAACTGTCTTTGACTCTGCTTCCTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACCCTACCAGCTGGAGTAGAAACTGTCTTTGACTCTGCTTCCTGT  988

seq1  TCTTGGAATTC  1011
      |||||||||||
seq2  TCTTGGAATTC  999